sp|Q9AXU3|SPA15_IPOBA ----> Senescence-associated protein SPA15, chloroplastic
Intron 1 GTTCGTAGTG ... GCATATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.19 | 53 | 1 | 6 |
| A2 | 14.29 | 39 | 6 | 7 |
| A3 | 18.33 | 49 | 3 | 19 |
| A4 | 20.51 | 31 | 10 | 6 |
| A5 | 11.11 | 36 | 4 | 5 |
| A6 | 8.9 | 128 | 3 | 22 |
| A7 | 11.16 | 211 | 19 | 34 |
| A8 | 10.61 | 139 | 13 | 20 |
| A9 | 9.24 | 162 | 15 | 18 |
| A10 | 9.22 | 133 | 10 | 17 |
>TRINITY_DN113133_c1_g4_i2 from sample A3 / Example spliced isoformTGTGGGACTCACTTTTTTTTTTCTTCGTAATTTCATGGTCATGATTATTACTTGTTTGTCTCCATCTTAAATGTGCGGTGGATAATGAGTTTGAGTTGAGTTGGGCAGATGATGCCGTGACTCAAAAACGATGTTTGTGGAGGGTAATGATTCACCTTCATTTTCAGCCACTTCACCATTTTACTGGACTGGACCGCACT
GCGCACCAGGATTCGTGAAAGTGTTCTATCCATCCCGATAAAAACCAAAGAAAAACAACTACACACAGACAAGAGACCTGGCATGCATGGAAATTCGACTCTGCTAACCACGAGCAACGGCATGACATACAGAAGGGTTGGGGAGTCCTGCACTGTACATTGAGGAGTGGCATCAATGGGTTTTCAATTCATCAATTCTT
AAAATTTTCCGGGAATGTTGTGTAAACCAAGTAAGGGCGTGTTGAGTGTTTGCATTTATCTGGAACAACCTTGTACATTCTCTTGCAAATAAGATCTTGTTTCCATTACTCTCACGATGCCTGAGGTGATGCCAAAAATGGCTTTGTCCAGAGGTGCTTCATTTGAAACTAAAATGCTTAATAAGGTTGAATCTTATGGC
GCCGGTTACAAGAATGTAAAGGCATGGAAATGCACATGGTTATCACCAAGGCTGAAACACAAAGGACAATGTTTTGCTGATAAAATAGACTCAGTCTTGAGAGGCAACCGACAAGTATTTGAAATCCCTAACCCAAACATTTTCCAGCATGCAAAATTACCTTTTCCTTATCATATTTCTCGAGCTCGGAACAGTGAGAT
TGAAGAATGCCTTATAGATTGTGAAGATGCCCTATCAGACCCTTCAAACTTGCAGTCTGAAAACTATTTGGAGGCAACAAGGGATCCCTCAATTCCAGGCAAAGAAGATGGACAAATTTTTAACCATACATGTCTAAATGATCATCCATGCTTATTATCACCCTTATCTTTTGATTCTTGTCGAGGGTTAGCAAATGCTG
CCAAATATGCCTGCAATGATGCCAAGTTTATGAATGAACGAGCACGCAATGACATTGTTTTACTCTCACGAGGGATCACGAGATTGAATGACCGTGCACGTCAGGATGTTGCTATTATTGGCTCTGAATTTCTCAAACTTGATGCTCGAGCAAGAGAGGATACTGGAAAGGTGGACAGTGGTGTCAAGAAAAAGGCTGCG
TGTCTTAAGCACATTGCAGAGGGTTTAACAGACAAAGCTCAAACTAAGTTGAAGATGGCAGCAGCTGAACACTGGAGTGATGGAGCTTTAGAAGCTGATTTACGGCGAGCTGATCTGCGTGCTAGGCGACGTGCCATGGAAGATGCTTTTATGGCTTTAGAGAATGTCAAGAACATTCACGATATGATGGTCAGAACAAT
GTACCAACTACCAAGGACTGCAGAGTCTGAAGGTGAGAAGGGCTTGGTCGCGGGGCTGACTATTGAGAAGAAGGGAAAAGCACTGAAAATATTTCCAGGAAATGTCTCTGATGATCAAATAACTGCTATTCAGAATGCATATTGGAGTATGGCATCTGCCCTGTCAGAAGCTGATGGAATTGACTACACCAATCCAGATG
AGTTGGAACTATTAGTGGCAGCTCTGCTAGATATGGATGCAATAGATGGAAAAAGTGGTGCTTCTCTTCTGGCAGAATGTTCAAGCTCTCCTGATGTTGGTACAAGGCAAGCACTAGCAAATGCTTTAGCAGATGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGAGACTAGCACAAGATAGC
AATCCAGCTGTTGCAGCTGCTGCATCCAAAGCCATTGAAGAGCTGAAAAGACAATGGCAAATAGAGGAAGGGGACACTTTAGTCTTCAGTTTGGATGAAAGCTTCTCAGACTTGGAAAAAATGAATCCAAATGGAGATACTGAGGATGAGTCAGATTAATGTTAGTTGTATGGATCTTGTCGACCTTGAAAGTCAAGTAT
GGGAATGCTTCTGCCATACATTTCAATGCAAGCATTATATGTTGAATTGTATCTTCCACAATGTATATATTTATGTTAGTTGGCTTCAACCATAGTTCCTATTCTCTGTTATGAAATGCAGGACATGTTACATGCAATCTAAGTCTTCGTGGCTGCTGTCCATGTGTTTTGTCAAAATTACATCTGTGGTGCACATCCAT
ACCGTGCCTTTTAAAAGGCGATTTCTTTCTGTATATCAAATGTACTCTGTTGAAAAAGGTCTTGAACTTTTTTCTCCGATGGTAATATGTACATCCAATGACCAATCTTGAACAACTGATATTGGCTTTGTTGGAGCCAGCTTTTAAACCTTCAATCAAACTCCTTTTTCAATCACGTTGGAAGTTTTGTGTCAAAGCTT
TTCGAAAGCGT
>TRINITY_DN113133_c1_g4_i1 from sample A3 / Example unspliced isoform:TGTGGGACTCACTTTTTTTTTTCTTCGTAATTTCATGGTCATGATTATTACTTGTTTGTCTCCATCTTAAATGTGCGGTGGATAATGAGTTTGAGTTGAGTTGGGCAGATGATGCCGTGACTCAAAAACGATGTTTGTGGAGGGTAATGATTCACCTTCATTTTCAGCCACTTCACCATTTTACTGGACTGGACCGCACT
GCGCACCAGGATTCGTGAAAGTGTTCTATCCATCCCGATAAAAACCAAAGAAAAACAACTACACACAGACAAGAGACCTGGCATGCATGGAAATTCGACTCTGCTAACCACGAGCAACGGCATGACATACAGAAGGGTTGGGGAGTCCTGCACTGTACATTGAGGAGTGGCATCAATGGGTTTTCAATTCATCAATTCTT
AAAATTTTCCGGGAATGTTGTGTAAACCAAGTAAGGGCGTGTTGAGTGTTTGCATTTATCTGGAACAACCTTGTACATTCTCTTGCAAATAAGATCTTGTTTCCATTACTCTCACGATGCCTGAGGTGATGCCAAAAATGGCTTTGTCCAGAGGTGCTTCATTTGAAACTAAAATGCTTAATAAGGTTGAATCTTATGGC
GCCGGTTACAAGAATGTAAAGGCATGGAAATGCACATGGTTATCACCAAGGCTGAAACACAAAGGACAATGTTTTGCTGATAAAATAGACTCAGTCTTGAGAGGCAACCGACAAGTATTTGAAATCCCTAACCCAAACATTTTCCAGCATGCAAAATTACCTTTTCCTTATCATATTTCTCGAGCTCGGAACAGTGAGAT
TGAAGAATGCCTTATAGATTGTGAAGATGCCCTATCAGACCCTTCAAACTTGCAGTCTGAAAACTATTTGGAGGCAACAAGGGATCCCTCAATTCCAGGCAAAGAAGATGGACAAATTTTTAACCATACATGTCTAAATGATCATCCATGCTTATTATCACCCTTATCTTTTGATTCTTGTCGAGGGTTAGCAAATGCTG
CCAAATATGCCTGCAATGATGCCAAGTTTATGAATGAACGAGCACGCAATGACATTGTTTTACTCTCACGAGGGATCACGAGATTGAATGACCGTGCACGTCAGGATGTTGCTATTATTGGCTCTGAATTTCTCAAACTTGATGCTCGAGCAAGAGAGGATACTGGAAAGGTGGACAGTGGTGTCAAGAAAAAGGCTGCG
TGTCTTAAGCACATTGCAGAGGGTTTAACAGACAAAGCTCAAACTAAGTTGAAGATGGCAGCAGCTGAACACTGGAGTGATGGAGCTTTAGAAGCTGATTTACGGCGAGCTGATCTGCGTGCTAGGCGACGTGCCATGGAAGATGCTTTTATGGCTTTAGAGAATGTCAAGAACATTCACGATATGATGGTCAGAACAAT
GTACCAACTACCAAGGACTGCAGAGTCTGAAGGTGAGAAGGGCTTGGTCGCGGGGCTGACTATTGAGAAGAAGGGAAAAGCACTGAAAATATTTCCAGGAAATGTCTCTGATGATCAAATAACTGCTATTCAGgttcgtagtgatcacaataaagtactaacaaattctatagttttgtttgggtgtagaatgaaatatt
gagaaaagaactgaaaatggcttttctggatgaaaatatcttgtgactttatgttcacatgatttaaattgcatatgtagAATGCATATTGGAGTATGGCATCTGCCCTGTCAGAAGCTGATGGAATTGACTACACCAATCCAGATGAGTTGGAACTATTAGTGGCAGCTCTGCTAGATATGGATGCAATAGATGGAAAA
AGTGGTGCTTCTCTTCTGGCAGAATGTTCAAGCTCTCCTGATGTTGGTACAAGGCAAGCACTAGCAAATGCTTTAGCAGATGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGAGACTAGCACAAGATAGCAATCCAGCTGTTGCAGCTGCTGCATCCAAAGCCATTGAAGAGCTGAAAAGACA
ATGGCAAATAGAGGAAGGGGACACTTTAGTCTTCAGTTTGGATGAAAGCTTCTCAGACTTGGAAAAAATGAATCCAAATGGAGATACTGAGGATGAGTCAGATTAATGTTAGTTGTATGGATCTTGTCGACCTTGAAAGTCAAGTATGGGAATGCTTCTGCCATACATTTCAATGCAAGCATTATATGTTGAATTGTATC
TTCCACAATGTATATATTTATGTTAGTTGGCTTCAACCATAGTTCCTATTCTCTGTTATGAAATGCAGGACATGTTACATGCAATCTAAGTCTTCGTGGCTGCTGTCCATGTGTTTTGTCAAAATTACATCTGTGGTGCACATCCATACCGTGCCTTTTAAAAGGCGATTTCTTTCTGTATATCAAATGTACTCTGTTGA
AAAAGGTCTTGAACTTTTTTCTCCGATGGTAATATGTACATCCAATGACCAATCTTGAACAACTGATATTGGCTTTGTTGGAGCCAGCTTTTAAACCTTCAATCAAACTCCTTTTTCAATCACGTTGGAAGTTTTGTGTCAAAGCTTTTCGAAAGCGT
Intron 2 GTATGGGAAT ... TGAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 8 | 30 | 22 |
| A2 | 67.21 | 10 | 29 | 12 |
| A3 | 55.56 | 14 | 28 | 7 |
| A4 | 55.56 | 10 | 19 | 6 |
| A5 | 68.42 | 3 | 8 | 5 |
| A6 | 65.09 | 96 | 203 | 155 |
| A7 | 64.13 | 80 | 182 | 104 |
| A8 | 71.52 | 86 | 261 | 171 |
| A9 | 61.63 | 80 | 153 | 104 |
| A10 | 63.1 | 31 | 78 | 28 |
>TRINITY_DN44472_c0_g2_i1 from sample A7 / Example spliced isoformAGAACATCGAAATAGCCAAAACTTTCGATACAATTAATACTACATACAATCTCCCTATTCCACAACAATCGCTGTTAATGTGGGACTCACTTTTTTTTTTCTTCGTAATTTCATGGTCATGATTATTACTTGTTTGTCTCCATCTTAAATGTGCGGTGGATAATGAGTTTGAGTTGAGTTGGGCAGATGATGCCGTGACT
CAAAAACGATGTTTGTGGAGGGTAATGATTCACCTTCATTTTCAGCCACTTCACCATTTTACTGGACTGGACCGCACTGCGCACCAGGATTCGTGAAAGTGTTCTATCCATCCCGATAAAAACCAAAGAAAAACAACTACACACAGACAAGAGACCTGGCATGCATGGAAATTCGACTCTGCTAACCACGAGCAACGGCA
TGACATACAGAAGGGTTGGGGAGTCCTGCACTGTACATTGAGGAGTGGCATCAATGGGTTTTCAATTCATCAATTCTTAAAATTTTCCGGGAATGTTGTGTAAACCAAGTAAGGGCGTGTTGAGTGTTTGCATTTATCTGGAACAACCTTGTACATTCTCTTGCAAATAAGATCTTGTTTCCATTACTCTCACGATGCCT
GAGGTGATGCCAAAAATGGCTTTGTCCAGAGGTGCTTCATTTGAAACTAAAATGCTTAATAAGGTTGAATCTTATGGCGCCGGTTACAAGAATGTAAAGGCATGGAAATGCACATGGTTATCACCAAGGCTGAAACACAAAGGACAATGTTTTGCTGATAAAATAGACTCAGTCTTGAGAGGCAACCGACAAGTATTTGA
AATCCCTAACCCAAACATTTTCCAGCATGCAAAATTACCTTTTCCTTATCATATTTCTCGAGCTCGGAACAGTGAGATTGAAGAATGCCTTATAGATTGTGAAGATGCCCTATCAGACCCTTCAAACTTGCAGTCTGAAAACTATTTGGAGGCAACAAGGGATCCCTCAATTCCAGGCAAAGAAGATGGACAAATTTTTA
ACCATACATGTCTAAATGATCATCCATGCTTATTATCACCCTTATCTTTTGATTCTTGTCGAGGGTTAGCAAATGCTGCCAAATATGCCTGCAATGATGCCAAGTTTATGAATGAACGAGCACGCAATGACATTGTTTTACTCTCACGAGGGATCACGAGATTGAATGACCGTGCACGTCAGGATGTTGCTATTATTGGC
TCTGAATTTCTCAAACTTGATGCTCGAGCAAGAGAGGATACTGGAAAGGTGGACAGTGGTGTCAAGAAAAAGGCTGCGTGTCTTAAGCACATTGCAGAGGGTTTAACAGACAAAGCTCAAACTAAGTTGAAGATGGCAGCAGCTGAACACTGGAGTGATGGAGCTTTAGAAGCTGATTTACGGCGAGCTGATCTGCGTGC
TAGGCGACGTGCCATGGAAGATGCTTTTATGGCTTTAGAGAATGTCAAGAACATTCACGATATGATGGTCAGAACAATGTACCAACTACCAAGGACTGCAGAGTCTGAAGGTGAGAAGGGCTTGGTCGCGGGGCTGACTATTGAGAAGAAGGGAAAAGCACTGAAAATATTTCCAGGAAATGTCTCTGATGATCAAATAA
CTGCTATTCAGAATGCATATTGGAGTATGGCATCTGCCCTGTCAGAAGCTGATGGAATTGACTACACCAATCCAGATGAGTTGGAACTATTAGTGGCAGCTCTGCTAGATATGGATGCAATAGATGGAAAAAGTGGTGCTTCTCTTCTGGCAGAATGTTCAAGCTCTCCTGATGTTGGTACAAGGCAAGCACTAGCAAAT
GCTTTAGCAGATGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGAGACTAGCACAAGATAGCAATCCAGCTGTTGCAGCTGCTGCATCCAAAGCCATTGAAGAGCTGAAAAGACAATGGCAAATAGAGGAAGGGGACACTTTAGTCTTCAGTTTGGATGAAAGCTTCTCAGACTTGGAAAAAAT
GAATCCAAATGGAGATACTGAGGATGAGTCAGATTAATGTTAGTTGTATGGATCTTGTCGACCTTGAAAGTCAAGACATGTTACATGCAATCTAAGTCTTCGTGGCTGCTGTCCATGTGTTTTGTCAAAATTACATCTGTGGTGCACATCCATACCGTGCCTTTTAAAAGGCGATTTCTTTCTGTATATCAAATGTACTC
TGTTGAAAAAGGTCTTGAACTTTTTTCTCCGATGGTAATATGTACATCCAATGACCAATCTTGAACAACTGATATTGGCTTTGTTGGAGCCAGCTTTTAAACCTTCAATCAAACTCCTTTTTCAATCACGTTGGAAGTTTTGTGTCAAAGCTTTTCGAAAGCGTCTCTGAGAAAATTGGTTGTAAACAATTAAAACATAT
TTTCTCATTAAGTTTTCCTCGAGTGCAACTAAGAAGAAATTACGAAGGTCCTTTGACAATATAGAAAACGGTGTGGGCA
>TRINITY_DN44472_c0_g2_i3 from sample A7 / Example unspliced isoform:AGAACATCGAAATAGCCAAAACTTTCGATACAATTAATACTACATACAATCTCCCTATTCCACAACAATCGCTGTTAATGTGGGACTCACTTTTTTTTTTCTTCGTAATTTCATGGTCATGATTATTACTTGTTTGTCTCCATCTTAAATGTGCGGTGGATAATGAGTTTGAGTTGAGTTGGGCAGATGATGCCGTGACT
CAAAAACGATGTTTGTGGAGGGTAATGATTCACCTTCATTTTCAGCCACTTCACCATTTTACTGGACTGGACCGCACTGCGCACCAGGATTCGTGAAAGTGTTCTATCCATCCCGATAAAAACCAAAGAAAAACAACTACACACAGACAAGAGACCTGGCATGCATGGAAATTCGACTCTGCTAACCACGAGCAACGGCA
TGACATACAGAAGGGTTGGGGAGTCCTGCACTGTACATTGAGGAGTGGCATCAATGGGTTTTCAATTCATCAATTCTTAAAATTTTCCGGGAATGTTGTGTAAACCAAGTAAGGGCGTGTTGAGTGTTTGCATTTATCTGGAACAACCTTGTACATTCTCTTGCAAATAAGATCTTGTTTCCATTACTCTCACGATGCCT
GAGGTGATGCCAAAAATGGCTTTGTCCAGAGGTGCTTCATTTGAAACTAAAATGCTTAATAAGGTTGAATCTTATGGCGCCGGTTACAAGAATGTAAAGGCATGGAAATGCACATGGTTATCACCAAGGCTGAAACACAAAGGACAATGTTTTGCTGATAAAATAGACTCAGTCTTGAGAGGCAACCGACAAGTATTTGA
AATCCCTAACCCAAACATTTTCCAGCATGCAAAATTACCTTTTCCTTATCATATTTCTCGAGCTCGGAACAGTGAGATTGAAGAATGCCTTATAGATTGTGAAGATGCCCTATCAGACCCTTCAAACTTGCAGTCTGAAAACTATTTGGAGGCAACAAGGGATCCCTCAATTCCAGGCAAAGAAGATGGACAAATTTTTA
ACCATACATGTCTAAATGATCATCCATGCTTATTATCACCCTTATCTTTTGATTCTTGTCGAGGGTTAGCAAATGCTGCCAAATATGCCTGCAATGATGCCAAGTTTATGAATGAACGAGCACGCAATGACATTGTTTTACTCTCACGAGGGATCACGAGATTGAATGACCGTGCACGTCAGGATGTTGCTATTATTGGC
TCTGAATTTCTCAAACTTGATGCTCGAGCAAGAGAGGATACTGGAAAGGTGGACAGTGGTGTCAAGAAAAAGGCTGCGTGTCTTAAGCACATTGCAGAGGGTTTAACAGACAAAGCTCAAACTAAGTTGAAGATGGCAGCAGCTGAACACTGGAGTGATGGAGCTTTAGAAGCTGATTTACGGCGAGCTGATCTGCGTGC
TAGGCGACGTGCCATGGAAGATGCTTTTATGGCTTTAGAGAATGTCAAGAACATTCACGATATGATGGTCAGAACAATGTACCAACTACCAAGGACTGCAGAGTCTGAAGGTGAGAAGGGCTTGGTCGCGGGGCTGACTATTGAGAAGAAGGGAAAAGCACTGAAAATATTTCCAGGAAATGTCTCTGATGATCAAATAA
CTGCTATTCAGAATGCATATTGGAGTATGGCATCTGCCCTGTCAGAAGCTGATGGAATTGACTACACCAATCCAGATGAGTTGGAACTATTAGTGGCAGCTCTGCTAGATATGGATGCAATAGATGGAAAAAGTGGTGCTTCTCTTCTGGCAGAATGTTCAAGCTCTCCTGATGTTGGTACAAGGCAAGCACTAGCAAAT
GCTTTAGCAGATGCTCCATCTATGTGGACTCTTGGTAATGCAGGAATGGGAGCATTACAGAGACTAGCACAAGATAGCAATCCAGCTGTTGCAGCTGCTGCATCCAAAGCCATTGAAGAGCTGAAAAGACAATGGCAAATAGAGGAAGGGGACACTTTAGTCTTCAGTTTGGATGAAAGCTTCTCAGACTTGGAAAAAAT
GAATCCAAATGGAGATACTGAGGATGAGTCAGATTAATGTTAGTTGTATGGATCTTGTCGACCTTGAAAGTCAAgtatgggaatgcttctgccatacatttcaatgcaagcattatatgttgaattgtatcttccacaatgtatatatttatgttagttggcttcaaccatagttcctattctctgttatgaaatgcagG
ACATGTTACATGCAATCTAAGTCTTCGTGGCTGCTGTCCATGTGTTTTGTCAAAATTACATCTGTGGTGCACATCCATACCGTGCCTTTTAAAAGGCGATTTCTTTCTGTATATCAAATGTACTCTGTTGAAAAAGGTCTTGAACTTTTTTCTCCGATGGTAATATGTACATCCAATGACCAATCTTGAACAACTGATAT
TGGCTTTGTTGGAGCCAGCTTTTAAACCTTCAATCAAACTCCTTTTTCAATCACGTTGGAAGTTTTGTGTCAAAGCTTTTCGAAAGCGTCTCTGAGAAAATTGGTTGTAAACAATTAAAACATATTTTCTCATTAAGTTTTCCTCGAGTGCAACTAAGAAGAAATTACGAAGGTCCTTTGACAATATAGAAAACGGTGTG
GGCA