NA ----> NA
Intron 1 GTAATGTTTT ... CAACCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 15 | 2 | 7 |
| A2 | 30.77 | 9 | 1 | 7 |
| A3 | 25 | 18 | 5 | 7 |
| A4 | 41.67 | 7 | 4 | 6 |
| A5 | 7.69 | 6 | 1 | 0 |
| A6 | 15.38 | 11 | 4 | 0 |
| A7 | 15.04 | 48 | 10 | 7 |
| A8 | 16.67 | 30 | 9 | 3 |
| A9 | 23.91 | 35 | 11 | 11 |
| A10 | 30.56 | 50 | 13 | 31 |
>TRINITY_DN39825_c0_g1_i1 from sample A8 / Example spliced isoformAAAATCTCTCCTTCACTTCCGCACAAACGGACCAGGAATCTGCAAATACAGAGTTGACTGCCCCCAATCCGTGAATGGTTTGCACATATGGAATTTTGGGGTTACCATTTGATTGGGCATCTTCATGGGTGATATTCAACGCGGTTTACTTCTAGATTAATAATTTGTAAGTGTCTGGCAGTTTTACCTCATCGAGTTGC
AATTGATAAGGAAGTCTGCTCGTGGCCCAGAGGTTCCCCAGTCTCGTTTGCATACTGGCATTGTTTACATTTTAGCATATGTTTTTCAAAATACCCGCAGTCGTGCAAAGCAAAAGCAAATAGTTACTTGGGTGGAAATTCAGTGGAAGAGGAAAGGAAAGGGACAAAGTCTAGTTCAGATTAAAGATCCAGAGTTCAAT
GTGATATAATCGCGCAATGGGACATCCGAGTTGTGGGCGGACGAATAGAGAGCCAGCTTTAAAATAAAATTCAACCAGAGCAAGAGCAGCATTAAGAGTAGCATTACCAAAACAACCCCAGCAAACGCTCTATCCATCTGCGCACATCCAGTGAAGTGGTGGTCATTCTATTTAGTGCTCAACTGATAGATATCATTCTT
AGTGAAATGGGCACTCGAAGATCTTCAGGAAAGTTGGAAACTATTATAGTTGAGAATGCAAAGGATGAAATGGGTAAGTGGATCGCGTTACAGGTGTCCATTGGATCTTGGGTTACTTTCCAACCATCAAGGAATCGAATTTGGGCAAAAATAAGAAGACTAGATGATTTAAAATCCCATTGGAAAGGTGTAGTAAGGGC
ATTTAAGCAGAGCCAGCATGATGAAAAGGTGGAGAAGGTGCTCATAGCTCATGTGTATGAGCGCAAGGACATCCTCAAAGAGTTTGTTGCCAAACAAGAAAATTTTCCTCAAATTGGTCTAAATTGTTTGTGCATTTCTGATTTTGAAGAATGGCAGCCCGTGGAGAGTATTACCAGTACTTTACGTGTTTTCCATTCGC
AAATAGGAGAGATACTCTATGAGGGAAAGAATTCCATGTCATTGAGGGAAGAAGGGGTATGGTTTTATAAGTATGATTACTTTCTTCCTAGTAGTAAAAGGGTTGGAAGAATTGAAGAAGCCAAGTTACCCACACTTCGTGAAATTGGATTACCAAATTCTAATCCAACATTGATTGATTGCATACGTTCAAAACTAGTT
CTTGAAATTCAATCTGGTATGCGGGAGAAGGGTGGTACATGTGATCATTTTGGTATGCACATACCATTTATGGTTTTTGCTGAAGTGTTTAAGGAAGAGGACTCTATTCGAAAGACTAAGAAGACTTATTCTTGCACAAACCCCTCTGACATCTTATTACGTAACTTATTTTACTCTAAATGGAATACAAGATTACATCT
TGTGAATGGAGAGCAATTAAAATGTGTGTTGAGTGTAGAGTCACTTCGTTTTAGATATTCAATACCGAGACAAACTCTCTATGTTTCTTTTAAGTTTCGACATTTTAGGCAGATAAAGGATAACATGGATTGGATTTGGATTCCAATAGAGCAAGACAATGACGATGGCACCCATTCTCCTATGATATCCATTGATATTT
TTAAGGATGGTGCACATTTCAAAACAATTTCCATGGAAGAAAACTGGAATTTGTTTGAAGTTAGAAGACACCTTGAATTCGAAGAGGAATCAACCCATGAGGAAGACTTCTATTTTATTCACAATGGAAAAAGGATTGGTAAAAGACGAGAGAAGAGCATCATGTGCAAAAGTTGTGCTCATCCTCATACATTAGAAATT
CGAGGAACACGATACAAGGGAAATAAATAAAGAATCCGATGGATTTTCAAAGGCTGGTATACAACTGGAGAATGGACTGTGGCATATTCAAGAGCTCAAGGATAGCCAACACTCCGAATATTTTCATCCCATTTTGTTATGACTTTATTATGGATGGAGGAGTATCAAGTGATGTTGATGTATCAAAGATTTAGGAGGGT
TACTGGTTTATTTTGATTATCTAGATGGAAAATTGGTAAAACCTTTTTGAGAAATCTCAGTTTAGAAAGATGAGTCTTGTTCAGAGATAAGATTTTTACTCCCTTGTGGAAGCCAACATTTGTAATGTTCTAGGCTATCAAGCAAATGCCAAAAAAAAGGTTTTTATTTCCCTCTATGTTTTTGAACATGACATAAATGC
TTAAATGCATATACGAAATGTACTTTCTATCTTAACATGAATAAAATTATGGTTTTCCCCAATGAAAAAAACATGTGAATCTGCT
>TRINITY_DN39825_c0_g1_i5 from sample A8 / Example unspliced isoform:AAAATCTCTCCTTCACTTCCGCACAAACGGACCAGGAATCTGCAAATACAGAGTTGACTGCCCCCAATCCGTGAATGGTTTGCACATATGGAATTTTGGGGTTACCATTTGATTGGGCATCTTCATGGGTGATATTCAACGCGGTTTACTTCTAGATTAATAATTTGTAAGTGTCTGGCAGTTTTACCTCATCGAGTTGC
AATTGATAAGGAAGTCTGCTCGTGGCCCAGAGGTTCCCCAGTCTCGTTTGCATACTGGCATTGTTTACATTTTAGCATATGTTTTTCAAAATACCCGCAGTCGTGCAAAGCAAAAGCAAATAGTTACTTGGGTGGAAATTCAGTGGAAGAGGAAAGGAAAGGGACAAAGTCTAGTTCAGATTAAAGATCCAGAGTTCAAT
GTGATATAATCGCGCAATGGGACATCCGAGTTGTGGGCGGACGAATAGAGAGCCAGCTTTAAAATAAAATTCAACCAGAGCAAGAGCAGCATTAAGAGTAGCATTACCAAAACAACCCCAGCAAACGCTCTATCCATCTGCGCACATCCAGTGAAGTGGTGGTCATTCTATTTAGTGCTCAACTGATAGATATCATTCTT
AGTGAAATGGGCACTCGAAGATCTTCAGGAAAGTTGGAAACTATTATAGTTGAGAATGCAAAGGATGAAATGGGTAAGTGGATCGCGTTACAGGTGTCCATTGGATCTTGGGTTACTTTCCAACCATCAAGGAATCGAATTTGGGCAAAAATAAGAAGACTAGATGATTTAAAATCCCATTGGAAAGGTGTAGTAAGGGC
ATTTAAGCAGAGCCAGCATGATGAAAAGGTGGAGAAGGTGCTCATAGCTCATGTGTATGAGCGCAAGGACATCCTCAAAGAGTTTGTTGCCAAACAAGAAAATTTTCCTCAAATTGGTCTAAATTGTTTGTGCATTTCTGATTTTGAAGAATGGCAGCCCGTGGAGAGTATTACCAGTACTTTACGTGTTTTCCATTCGC
AAATAGGAGAGATACTCTATGAGGGAAAGAATTCCATGTCATTGAGGGAAGAAGGGGTATGGTTTTATAAGTATGATTACTTTCTTCCTAGTAGTAAAAGGGTTGGAAGAATTGAAGAAGCCAAGTTACCCACACTTCGTGAAATTGGATTACCAAATTCTAATCCAACATTGATTGATTGCATACGTTCAAAACTAGTT
CTTGAAATTCAATCTGGTATGCGGGAGAAGGGTGGTACATGTGATCATTTTGGTATGCACATACCATTTATGGTTTTTGCTGAAGTGTTTAAGGAAGAGGACTCTATTCGAAAGACTAAGAAGACTTATTCTTGCACAAACCCCTCTGACATCTTATTACGTAACTTATTTTACTCTAAATGGAATACAAGATTACATCT
TGTGAATGGAGAGCAATTAAAATGTGTGTTGAGTGTAGAGTCACTTCGTTTTAGgtaatgttttacaattttgattttcctttttcattgattttcacaatatttgacatcactttataactatatttttgttctcttcaacctgtagATATTCAATACCGAGACAAACTCTCTATGTTTCTTTTAAGTTTCGACATTTT
AGGCAGATAAAGGATAACATGGATTGGATTTGGATTCCAATAGAGCAAGACAATGACGATGGCACCCATTCTCCTATGATATCCATTGATATTTTTAAGGATGGTGCACATTTCAAAACAATTTCCATGGAAGAAAACTGGAATTTGTTTGAAGTTAGAAGACACCTTGAATTCGAAGAGGAATCAACCCATGAGGAAGA
CTTCTATTTTATTCACAATGGAAAAAGGGTGAGAATTTTATAGTTTATGTATGTTTCTTCATTTTATAACCACAATTTCTTACTTACATATTAATGATTTCATTTGGATAGATTGGTAAAAGACGAGAGAAGAGCATCATGTGCAAAAGTTGTGCTCATCCTCATACATTAGAAATTCGAGGAACACGATACAAGGGAAA
TAAATAAAGAATCCGATGGATTTTCAAAGGCTGGTATACAACTGGAGAATGGACTGTGGCATATTCAAGAGCTCAAGGATAGCCAACACTCCGAATATTTTCATCCCATTTTGTTATGACTTTATTATGGATGGAGGAGTATCAAGTGATGTTGATGTATCAAAGATTTAGGAGGGTTACTGGTTTATTTTGATTATCTA
GATGGAAAATTGGTAAAACCTTTTTGAGAAATCTCAGTTTAGAAAGATGAGTCTTGTTCAGAGATAAGATTTTTACTCCCTTGTGGAAGCCAACATTTGTAATGTTCTAGGCTATCAAGCAAATGCCAAAAAAAAGGTTTTTATTTCCCTCTATGTTTTTGAACATGACATAAATGCTTAAATGCATATACGAAATGTAC
TTTCTATCTTAACATGAATAAAATTATGGTTTTCCCCAATGAAAAAAACATGTGAATCTGCT
Intron 2 GTGAGAATTT ... ATTTGGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.71 | 13 | 6 | 3 |
| A2 | 26.32 | 7 | 3 | 2 |
| A3 | 28 | 9 | 3 | 4 |
| A4 | 25 | 3 | 1 | 1 |
| A5 | 20 | 6 | 2 | 1 |
| A6 | 23.64 | 21 | 3 | 10 |
| A7 | 22.41 | 45 | 7 | 19 |
| A8 | 19.72 | 57 | 10 | 18 |
| A9 | 22.67 | 58 | 11 | 23 |
| A10 | 25.93 | 50 | 6 | 29 |
>TRINITY_DN39825_c0_g1_i1 from sample A8 / Example spliced isoformAAAATCTCTCCTTCACTTCCGCACAAACGGACCAGGAATCTGCAAATACAGAGTTGACTGCCCCCAATCCGTGAATGGTTTGCACATATGGAATTTTGGGGTTACCATTTGATTGGGCATCTTCATGGGTGATATTCAACGCGGTTTACTTCTAGATTAATAATTTGTAAGTGTCTGGCAGTTTTACCTCATCGAGTTGC
AATTGATAAGGAAGTCTGCTCGTGGCCCAGAGGTTCCCCAGTCTCGTTTGCATACTGGCATTGTTTACATTTTAGCATATGTTTTTCAAAATACCCGCAGTCGTGCAAAGCAAAAGCAAATAGTTACTTGGGTGGAAATTCAGTGGAAGAGGAAAGGAAAGGGACAAAGTCTAGTTCAGATTAAAGATCCAGAGTTCAAT
GTGATATAATCGCGCAATGGGACATCCGAGTTGTGGGCGGACGAATAGAGAGCCAGCTTTAAAATAAAATTCAACCAGAGCAAGAGCAGCATTAAGAGTAGCATTACCAAAACAACCCCAGCAAACGCTCTATCCATCTGCGCACATCCAGTGAAGTGGTGGTCATTCTATTTAGTGCTCAACTGATAGATATCATTCTT
AGTGAAATGGGCACTCGAAGATCTTCAGGAAAGTTGGAAACTATTATAGTTGAGAATGCAAAGGATGAAATGGGTAAGTGGATCGCGTTACAGGTGTCCATTGGATCTTGGGTTACTTTCCAACCATCAAGGAATCGAATTTGGGCAAAAATAAGAAGACTAGATGATTTAAAATCCCATTGGAAAGGTGTAGTAAGGGC
ATTTAAGCAGAGCCAGCATGATGAAAAGGTGGAGAAGGTGCTCATAGCTCATGTGTATGAGCGCAAGGACATCCTCAAAGAGTTTGTTGCCAAACAAGAAAATTTTCCTCAAATTGGTCTAAATTGTTTGTGCATTTCTGATTTTGAAGAATGGCAGCCCGTGGAGAGTATTACCAGTACTTTACGTGTTTTCCATTCGC
AAATAGGAGAGATACTCTATGAGGGAAAGAATTCCATGTCATTGAGGGAAGAAGGGGTATGGTTTTATAAGTATGATTACTTTCTTCCTAGTAGTAAAAGGGTTGGAAGAATTGAAGAAGCCAAGTTACCCACACTTCGTGAAATTGGATTACCAAATTCTAATCCAACATTGATTGATTGCATACGTTCAAAACTAGTT
CTTGAAATTCAATCTGGTATGCGGGAGAAGGGTGGTACATGTGATCATTTTGGTATGCACATACCATTTATGGTTTTTGCTGAAGTGTTTAAGGAAGAGGACTCTATTCGAAAGACTAAGAAGACTTATTCTTGCACAAACCCCTCTGACATCTTATTACGTAACTTATTTTACTCTAAATGGAATACAAGATTACATCT
TGTGAATGGAGAGCAATTAAAATGTGTGTTGAGTGTAGAGTCACTTCGTTTTAGATATTCAATACCGAGACAAACTCTCTATGTTTCTTTTAAGTTTCGACATTTTAGGCAGATAAAGGATAACATGGATTGGATTTGGATTCCAATAGAGCAAGACAATGACGATGGCACCCATTCTCCTATGATATCCATTGATATTT
TTAAGGATGGTGCACATTTCAAAACAATTTCCATGGAAGAAAACTGGAATTTGTTTGAAGTTAGAAGACACCTTGAATTCGAAGAGGAATCAACCCATGAGGAAGACTTCTATTTTATTCACAATGGAAAAAGGATTGGTAAAAGACGAGAGAAGAGCATCATGTGCAAAAGTTGTGCTCATCCTCATACATTAGAAATT
CGAGGAACACGATACAAGGGAAATAAATAAAGAATCCGATGGATTTTCAAAGGCTGGTATACAACTGGAGAATGGACTGTGGCATATTCAAGAGCTCAAGGATAGCCAACACTCCGAATATTTTCATCCCATTTTGTTATGACTTTATTATGGATGGAGGAGTATCAAGTGATGTTGATGTATCAAAGATTTAGGAGGGT
TACTGGTTTATTTTGATTATCTAGATGGAAAATTGGTAAAACCTTTTTGAGAAATCTCAGTTTAGAAAGATGAGTCTTGTTCAGAGATAAGATTTTTACTCCCTTGTGGAAGCCAACATTTGTAATGTTCTAGGCTATCAAGCAAATGCCAAAAAAAAGGTTTTTATTTCCCTCTATGTTTTTGAACATGACATAAATGC
TTAAATGCATATACGAAATGTACTTTCTATCTTAACATGAATAAAATTATGGTTTTCCCCAATGAAAAAAACATGTGAATCTGCT
>TRINITY_DN39825_c0_g1_i5 from sample A8 / Example unspliced isoform:AAAATCTCTCCTTCACTTCCGCACAAACGGACCAGGAATCTGCAAATACAGAGTTGACTGCCCCCAATCCGTGAATGGTTTGCACATATGGAATTTTGGGGTTACCATTTGATTGGGCATCTTCATGGGTGATATTCAACGCGGTTTACTTCTAGATTAATAATTTGTAAGTGTCTGGCAGTTTTACCTCATCGAGTTGC
AATTGATAAGGAAGTCTGCTCGTGGCCCAGAGGTTCCCCAGTCTCGTTTGCATACTGGCATTGTTTACATTTTAGCATATGTTTTTCAAAATACCCGCAGTCGTGCAAAGCAAAAGCAAATAGTTACTTGGGTGGAAATTCAGTGGAAGAGGAAAGGAAAGGGACAAAGTCTAGTTCAGATTAAAGATCCAGAGTTCAAT
GTGATATAATCGCGCAATGGGACATCCGAGTTGTGGGCGGACGAATAGAGAGCCAGCTTTAAAATAAAATTCAACCAGAGCAAGAGCAGCATTAAGAGTAGCATTACCAAAACAACCCCAGCAAACGCTCTATCCATCTGCGCACATCCAGTGAAGTGGTGGTCATTCTATTTAGTGCTCAACTGATAGATATCATTCTT
AGTGAAATGGGCACTCGAAGATCTTCAGGAAAGTTGGAAACTATTATAGTTGAGAATGCAAAGGATGAAATGGGTAAGTGGATCGCGTTACAGGTGTCCATTGGATCTTGGGTTACTTTCCAACCATCAAGGAATCGAATTTGGGCAAAAATAAGAAGACTAGATGATTTAAAATCCCATTGGAAAGGTGTAGTAAGGGC
ATTTAAGCAGAGCCAGCATGATGAAAAGGTGGAGAAGGTGCTCATAGCTCATGTGTATGAGCGCAAGGACATCCTCAAAGAGTTTGTTGCCAAACAAGAAAATTTTCCTCAAATTGGTCTAAATTGTTTGTGCATTTCTGATTTTGAAGAATGGCAGCCCGTGGAGAGTATTACCAGTACTTTACGTGTTTTCCATTCGC
AAATAGGAGAGATACTCTATGAGGGAAAGAATTCCATGTCATTGAGGGAAGAAGGGGTATGGTTTTATAAGTATGATTACTTTCTTCCTAGTAGTAAAAGGGTTGGAAGAATTGAAGAAGCCAAGTTACCCACACTTCGTGAAATTGGATTACCAAATTCTAATCCAACATTGATTGATTGCATACGTTCAAAACTAGTT
CTTGAAATTCAATCTGGTATGCGGGAGAAGGGTGGTACATGTGATCATTTTGGTATGCACATACCATTTATGGTTTTTGCTGAAGTGTTTAAGGAAGAGGACTCTATTCGAAAGACTAAGAAGACTTATTCTTGCACAAACCCCTCTGACATCTTATTACGTAACTTATTTTACTCTAAATGGAATACAAGATTACATCT
TGTGAATGGAGAGCAATTAAAATGTGTGTTGAGTGTAGAGTCACTTCGTTTTAGGTAATGTTTTACAATTTTGATTTTCCTTTTTCATTGATTTTCACAATATTTGACATCACTTTATAACTATATTTTTGTTCTCTTCAACCTGTAGATATTCAATACCGAGACAAACTCTCTATGTTTCTTTTAAGTTTCGACATTTT
AGGCAGATAAAGGATAACATGGATTGGATTTGGATTCCAATAGAGCAAGACAATGACGATGGCACCCATTCTCCTATGATATCCATTGATATTTTTAAGGATGGTGCACATTTCAAAACAATTTCCATGGAAGAAAACTGGAATTTGTTTGAAGTTAGAAGACACCTTGAATTCGAAGAGGAATCAACCCATGAGGAAGA
CTTCTATTTTATTCACAATGGAAAAAGGgtgagaattttatagtttatgtatgtttcttcattttataaccacaatttcttacttacatattaatgatttcatttggatagATTGGTAAAAGACGAGAGAAGAGCATCATGTGCAAAAGTTGTGCTCATCCTCATACATTAGAAATTCGAGGAACACGATACAAGGGAAA
TAAATAAAGAATCCGATGGATTTTCAAAGGCTGGTATACAACTGGAGAATGGACTGTGGCATATTCAAGAGCTCAAGGATAGCCAACACTCCGAATATTTTCATCCCATTTTGTTATGACTTTATTATGGATGGAGGAGTATCAAGTGATGTTGATGTATCAAAGATTTAGGAGGGTTACTGGTTTATTTTGATTATCTA
GATGGAAAATTGGTAAAACCTTTTTGAGAAATCTCAGTTTAGAAAGATGAGTCTTGTTCAGAGATAAGATTTTTACTCCCTTGTGGAAGCCAACATTTGTAATGTTCTAGGCTATCAAGCAAATGCCAAAAAAAAGGTTTTTATTTCCCTCTATGTTTTTGAACATGACATAAATGCTTAAATGCATATACGAAATGTAC
TTTCTATCTTAACATGAATAAAATTATGGTTTTCCCCAATGAAAAAAACATGTGAATCTGCT