NA ----> NA

Intron 1 GTTGAGTAGA ... GCTTGTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	1	2	0
A2	100	0	2	0
A3	66.67	1	2	2
A4	100	0	12	2
A5	-1	0	0	0
A6	100	0	0	1
A7	100	0	1	5
A8	-1	0	0	0
A9	100	0	1	1
A10	66.67	2	7	1

>TRINITY_DN46989_c1_g4_i2 from sample A7 / Example spliced isoform

AGGGATTGTAAGATGGAGTGCTCCGCAGAGGGTCTTCAATTTTGGAAGAAGAAAGTCGAAGAAGATCCACATAAGTCAGCAGATATTAGGGTCTGCTTAGCTCCGGTAGAAGAAAAGATGGAGAGATAGAGAGCAGAGCCGAGCAGCAAAGTTTAGGGTTTGTAAGATGCCGAGCAGTAAATTTTAGGGTTTGTAAGATG
CAGACTCTGTTTCTAGTGGGATCTAAAAGGAAGATGA

>TRINITY_DN46989_c1_g4_i3 from sample A7 / Example unspliced isoform:

AGGGATTGTAAGATGGAGTGCTCCGCAGAGGGTCTTCAATTTTGGAAGAAGAAAGTCGAAGAAGATCCACATAAGTCAGCAGATATTAGGGTCTGCTTAGCTCCGGTAGAAGAAAAGATGGAGAGATAGAGAGCAGAGCCGAGCAGCAAAGTTTAGGGTTTGTAAGATGCCGAGCAGTAAATTTTAGGGTTTGTAAGATG
CAGAgttgagtagattttaatgtctctaattttgggcatagaaagttgaagaagatccatatctattgtcttggtcagatacttcgaccatggccatgattatttaatttcactttccattttgtggatttctttctcccattttttttcttttaattctttcatttttgttttaagttttgatgtgttcggccttgttt
tcttcctttctaattatttcatttctgtttgcttgttcagCTCTGTTTCTAGTGGGATCGAAAAGGAAGATGAGAAATTAAAAACGTCCAGAAGTGGGCATCACTGGGTGGCTAATTGTGATGGTGGGAAGTCTTGTACTCTTTTAATTAAATCATATTTCCATTATTTCAAAATGTTCTGTTTTGTCCTCCCTGAATGC
AGAGCCAGAGCTATGGGAGCAATAATTAGGTGTAGAAATCACAGATGGGAACTATAATTAGGTGCAGAAATCACAGATGCTGCAGAATTTCGGGATTGCAGGTGGGTTTTTAAGTTCAAAGGCTTATATGGGTTTACTGTTTTTATTCACCCTCTTCTATCCAATTTCATGTGAGGGTTTTTTCTCTTTTTTATAATCTT
CAACAACACTGGATTCAGAGATGTATGAGAGAGACATGTCTTGGTCAAAACCCAATTCCATGTGAGGGTCTAGTTTTGCTTTTTAAATTTTCTGGGCGACTGGCCTTTGTGATGTATATTTTTATATGTCAGTGGAAATCATTGTTTGTGGGTTTATAGGGATTTAGTTTCATGCACTGTTTAGGTTCAATAAGCAGGTG
TGCCATAAATCACCTTAATCTCATATTTCTTGATCTTATGAATGTTTTTAATAATGTTAGAGTTACTATATTTCTTAACTTTGTCAGTCTTTTTAAAAACACCTCAAGCCCAAATCTCTG