sp|Q9C5W7|TOM2A_ARATH ----> Tobamovirus multiplication protein 2A
Intron 1 GTAAGACCAT ... CTGTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.29 | 53.3 | 0 | 10 |
| A2 | 31.68 | 58.3 | 1 | 26 |
| A3 | 22.42 | 56 | 0 | 16 |
| A4 | 35.93 | 45.3 | 2 | 25 |
| A5 | 29.26 | 34.7 | 2 | 14 |
| A6 | 22.37 | 321.7 | 0 | 92 |
| A7 | 25.79 | 205.3 | 0 | 70 |
| A8 | 23.26 | 252.7 | 2 | 75 |
| A9 | 21.95 | 270.3 | 4 | 75 |
| A10 | 17.78 | 150.3 | 0 | 32 |
>TRINITY_DN41337_c1_g1_i6 from sample A9 / Example spliced isoformAAAAATGGCCATCCTGGCTGAAAGCTGGAGAGCCAATTCTGATTTAAATGTAATAGTTGGCCATTCAGCAGGCTCTTTGCCTTGCAAACGCTGATCCACAAAGAACGGTATGGGACTAAAGATTTTGCTGACCATCTTCCTTCAGCTATCCATTTTTTCATAAATATGAATCATATATTATATTATAAATCAATATAGAT
CTGCATTAAGATTGACGCATCCAGGTGCCATAGAAGGTTTATACCAGATCCCCCTTCTGACACAAACAAGGAGAGCTAGAATCTCTACTTTGTGCCCGCTGTGAGGGATATTTTTCTTTTCCAAAAATGGCCATCCTGGCTGAAATCTGGAGAGCCGGTTCTCATTTAAATGTAATAACTTGGCCATGGAGCAGGCCCTT
GCAAATGCTGATCCACAAAGAACGGTATGGGACTAAATATTTTGATGGCCATTTTCCTTCAGCTATCTATTTTTTCATGAAAATGAATCATATATTACGTTAGAAATCAATATAGATCTACATTAAGATTGACACTTCCAGGTGCCATAGAAGGTTTATAAATCTTCCTTCCTACATAAACAAGAAGAGCTAGCATATCT
GCTTTGGTCCCACTGTAGCAGGCTTTTTGCCTTGCAAATGCTGATCCACAAAGAACGGTATGGGACTAAAGATTTTGATGGTCATTTTCCTTCAGCTATCCATTTTTTCATGAAAATGAATCATATATTACATTATAAATCAATACAGATCTACCTTAAGATTGACACATCCAGGTGCCATAGAAGGTTTATAGTTTATA
CGAAATCCCCCTTCCTATACAAACAAGGAGAGCTAGCATCTGTGCTTTGGTCCCACTGTGAGGGATATGTATATCTTTTCCAAAAATGGCCATCCTGGTTGAAATCTGGGTAGCCAATTCTCATTTAAATGTAATAATTTGGCCATGAAGCAGGCTCTTTGCCGTGCAAATGCTGATCCACAAACAACGGTATGGGACTA
AAGATTTTGATGGCCATTTTCCTTCAGCTATCCATTTTTTCATGAAAATGAATCATATATTACATTAGAAATCAATATAGATCTACATTAAGATTGACACGTCCAGGTGCCATAGAAGGTTTATATCAAATCCCCTTTCCTACACAAACACGGAAGACTGGCATCTCTGCTTTTGTCCCACTGTGAGGGATATCTATATC
TTTTCCAAAAATGGCCATCCTGGCTGAAATCTGGAGAGCCAATTGTCATTTAAATGTAATAACTTCTCCCAAGATGAATGACCTAGTTGTCTTTTGAAAAATAGTGTTGCAGTAGCGTTTTGACAAGAAGCAGATGCATGTTACTCTGATCATATCCCACATACTGCCAAGTTATCCACTTGTCTCAAACATAGTCCCTT
TTCAACAAAGAGGATATACAGAGAGAATATTGTATTCGATGCTGGAGAGCCAATTCTGATTTAAATGTAATAGTTGGCCATTCAGCAGGCTCTTTGCCTTGCAAACGCTGATCCACAAAGAACGGTATGGAGATGCTTGTTAGTCTGATCACGTGCCACATACTGTTTAATCATCCATTTGTCCCCAAACAGTCCCCTTT
AAAAAAAAGGAGCTAATGAGAGAATATAGTACTCAATCGTAATCTAGTCTCAAAACATTCTGGCAACCTTGCAATTTGACTTCACATGCTTAACTATGTCTGGCTTTTGGAAGATCACAAATCCATTTTTCTTTACCTTATGCATATCATCTCAACATCGTCTATTGTAAGAGTTGCGTCTAAGTCTGTTATGTTTCCCT
GCAGATTTTTTTTGATGACAGTACCCGGAATATAGCCGGAGGAAAGCGTGCAGGCCTGCATACTGTATTGGTGGGCACTTCGGTCCGAACAGAGGGAGCAGATTTTGCGCTTGAAAGTATTCACAACATTAGAGAAGCTCTGCCTGATATATGGGAAGAAGAAGATGCAGAGAGCTCCAAAAACGTTGTGCGTTCAAGAG
CAGGTGCAAGTATTGAAACTGTTGTCACTGCATAAGCCATGATCTGATTGAATGAAGGACTATGCTAATCCCTTTGGAGCTTTTGCTTAGAGGATACACTGATTGTAATATGGACTTTTGCCTTTAGCCAAAGGAAATTCCTATTCTTTGTAATCTTGTTGAAGTGTGTATTTGATCTCAAGAATCTGTACTGGATGTTG
TTAATCAATTCCATACAGGTGATCAATAGATAAAATCAATGAATAATCTGTTTTTTTTAACAATATCCCTTCCTTAAGATTAGACAAGATGCTATTTTAATTTTCAACCTCTGCTTTTCTTATTTAATATTGTTCCGATACCTTGGCCTTCATATAAGGACCGTAAGCCTTTACATGGTTGCATTCCTTTATCAGGTTCT
TGTCATTATTACATGGCCTCCCGAAGCTCCATGTTAGCGGGCCATGGATTCTCATAACATTTATAGTTAGGACTCGCAAATGTGGGTCATCGAAAATCGGTCAGTTTCGGCCAGGAACAAGGATATAAAGG
>TRINITY_DN41337_c1_g1_i1 from sample A9 / Example unspliced isoform:TTGTATTCGATGATAATCCTGTCCAAAACATAAAGCTGAAGTTGTCTGACAGAGGTGTTTCAACAAGAAAGAGATGCTTGTTAGTCTGATCACGTGCCACATACTGTTTAATCATCCATTTGTCCCCAAACAGTCCCCTTTAAAAAAAAGGAGCTAATGAGAGAATATAGTACTCAATCGTAATCTAGTCTCAAAACATT
CTGGCAACCTTGCAATTTGACTTCACATGCTTAACTATGTCTGGCTTTTGGAAGATCACAAATCCATTTTTCTTTACCTTATGCATATCATCTCAACATCGTCTATTGTAAGAGTTGCGTCTAAGTCTGTTATGTTTCCCTGCAGATTTTTTTTGATGACAGTACCCGGAATATAGCCGGAGGAAAGCGTGCAGGCCTGC
ATACTGTATTGgtaagaccatataattcgaaatggatatgatgcttttgtaaaaaaggataattagtccaatcttcctctaacttcaatattggctttcactgtcaacagGTGGGCACTTCGGTCCGAACAGAGGGAGCAGATTTTGCGCTTGAAAGTATTCACAACATTAGAGAAGCTCTGCCTGATATATGGGAAGAA
GAAGATGCAGAGAGCTCCAAAAACGTTGTGCGTTCAAGAGCAGGTGCAAGTATTGAAACTGTTGTCACTGCATAAGCCATGATCTGATTGAATGAAGGACTATGCTAATCCCTTTGGAGCTTTTGCTTAGAGGATACACTGATTGTAATATGGACTTTTGCCTTTAGCCAAAGGAAATTCCTATTCTTTGTAATCTTGTT
GAAGTGTGTATTTGATCTCAAGAATCTGTACTGGATGTTGTTAATCAATTCCATACAGGTGATCAATAGATAAAATCAATGAATAATCTGTTTTTTTTAACAATATCCCTTCCTTAAGATTAGACAAGATGCTATTTTAATTTTCAACCTCTGCTTTTCTTATTTAATATTGTTCCGATACCTTGGCCTTCATATAAGGA
CCGTAAGCCTTTACATGGTTGCATTCCTTTATCAGGTTCTTGTCATTATTACATGGCCTCCCGAAGCTCCATGTTAGCGGGCCATGGATTCTCATAACATTTATAGTTAGGACTCGCAAATGTGGGTCATCGAAAATCGGTCAGTTTCGGCCAGGAACAAGGATATAAAGG
Intron 2 GTATGGAGAT ... TTCCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.77 | 52 | 0 | 21 |
| A2 | 16.36 | 46 | 1 | 9 |
| A3 | 29.55 | 31 | 0 | 13 |
| A4 | 25 | 30 | 0 | 10 |
| A5 | 25.71 | 26 | 0 | 9 |
| A6 | 26.98 | 138 | 0 | 51 |
| A7 | 20.13 | 123 | 0 | 31 |
| A8 | 21.08 | 146 | 0 | 39 |
| A9 | 27.56 | 163 | 1 | 62 |
| A10 | 26.5 | 86 | 0 | 31 |
>TRINITY_DN41337_c1_g1_i7 from sample A9 / Example spliced isoformCACGAAGACACCCATAATTTGCAAGCCCTCAAAAGAGGCCATGGAGCAGGCTCTTCGCATTGCAAATGCTGATCCACAAAGAACGATTTTTTTTGATGACAGTACCCGGAATATAGCCGGAGGAAAGCGTGCAGGCCTGCATACTGTATTGGTGGGCACTTCGGTCCGAACAGAGGGAGCAGATTTTGCGCTTGAAAGTA
TTCACAACATTAGAGAAGCTCTGCCTGATATATGGGAAGAAGAAGATGCAGAGAGCTCCAAAAACGTTGTGCGTTCAAGAGCAGGTGCAAGTATTGAAACTGTTGTCACTGCATAAGCCATGATCTGATTGAATGAAGGACTATGCTAATCCCTTTGGAGCTTTTGCTTAGAGGATACACTGATTGTAATATGGACTTTT
GCCTTTAGCCAAAGGAAATTCCTATTCTTTGTAATCTTGTTGAAGTGTGTATTTGATCTCAAGAATCTGTACTGGATGTTGTTAATCAATTCCATACAGGTGATCAATAGATAAAATCAATGAATAATCTGTTTTTTTTAACAATATCCCTTCCTTAAGATTAGACAAGATGCTATTTTAATTTTCAACCTCTGCTTTTC
TTATTTAATATTGTTCCGATACCTTGGCCTTCATATAAGGACCGTAAGCCTTTACATGGTTGCATTCCTTTATCAGGTTCTTGTCATTATTACATGGCCTCCCGAAGCTCCATGTTAGCGGGCCATGGATTCTCATAACATTTATAGTTAGGACTCGCAAATGTGGGTCATCGAAAATCGGTCAGTTTCGGCCAGGAACA
AGGATATAAAGG
>TRINITY_DN41337_c1_g1_i6 from sample A9 / Example unspliced isoform:AAAAATGGCCATCCTGGCTGAAAGCTGGAGAGCCAATTCTGATTTAAATGTAATAGTTGGCCATTCAGCAGGCTCTTTGCCTTGCAAACGCTGATCCACAAAGAACGGTATGGGACTAAAGATTTTGCTGACCATCTTCCTTCAGCTATCCATTTTTTCATAAATATGAATCATATATTATATTATAAATCAATATAGAT
CTGCATTAAGATTGACGCATCCAGGTGCCATAGAAGGTTTATACCAGATCCCCCTTCTGACACAAACAAGGAGAGCTAGAATCTCTACTTTGTGCCCGCTGTGAGGGATATTTTTCTTTTCCAAAAATGGCCATCCTGGCTGAAATCTGGAGAGCCGGTTCTCATTTAAATGTAATAACTTGGCCATGGAGCAGGCCCTT
GCAAATGCTGATCCACAAAGAACGGTATGGGACTAAATATTTTGATGGCCATTTTCCTTCAGCTATCTATTTTTTCATGAAAATGAATCATATATTACGTTAGAAATCAATATAGATCTACATTAAGATTGACACTTCCAGGTGCCATAGAAGGTTTATAAATCTTCCTTCCTACATAAACAAGAAGAGCTAGCATATCT
GCTTTGGTCCCACTGTAGCAGGCTTTTTGCCTTGCAAATGCTGATCCACAAAGAACGGTATGGGACTAAAGATTTTGATGGTCATTTTCCTTCAGCTATCCATTTTTTCATGAAAATGAATCATATATTACATTATAAATCAATACAGATCTACCTTAAGATTGACACATCCAGGTGCCATAGAAGGTTTATAGTTTATA
CGAAATCCCCCTTCCTATACAAACAAGGAGAGCTAGCATCTGTGCTTTGGTCCCACTGTGAGGGATATGTATATCTTTTCCAAAAATGGCCATCCTGGTTGAAATCTGGGTAGCCAATTCTCATTTAAATGTAATAATTTGGCCATGAAGCAGGCTCTTTGCCGTGCAAATGCTGATCCACAAACAACGGTATGGGACTA
AAGATTTTGATGGCCATTTTCCTTCAGCTATCCATTTTTTCATGAAAATGAATCATATATTACATTAGAAATCAATATAGATCTACATTAAGATTGACACGTCCAGGTGCCATAGAAGGTTTATATCAAATCCCCTTTCCTACACAAACACGGAAGACTGGCATCTCTGCTTTTGTCCCACTGTGAGGGATATCTATATC
TTTTCCAAAAATGGCCATCCTGGCTGAAATCTGGAGAGCCAATTGTCATTTAAATGTAATAACTTCTCCCAAGATGAATGACCTAGTTGTCTTTTGAAAAATAGTGTTGCAGTAGCGTTTTGACAAGAAGCAGATGCATGTTACTCTGATCATATCCCACATACTGCCAAGTTATCCACTTGTCTCAAACATAGTCCCTT
TTCAACAAAGAGGATATACAGAGAGAATATTGTATTCGATGCTGGAGAGCCAATTCTGATTTAAATGTAATAGTTGGCCATTCAGCAGGCTCTTTGCCTTGCAAACGCTGATCCACAAAGAACGgtatggagatgcttgttagtctgatcacgtgccacatactgtttaatcatccatttgtccccaaacagtccccttt
aaaaaaaaggagctaatgagagaatatagtactcaatcgtaatctagtctcaaaacattctggcaaccttgcaatttgacttcacatgcttaactatgtctggcttttggaagatcacaaatccatttttctttaccttatgcatatcatctcaacatcgtctattgtaagagttgcgtctaagtctgttatgtttccct
gcagATTTTTTTTGATGACAGTACCCGGAATATAGCCGGAGGAAAGCGTGCAGGCCTGCATACTGTATTGGTGGGCACTTCGGTCCGAACAGAGGGAGCAGATTTTGCGCTTGAAAGTATTCACAACATTAGAGAAGCTCTGCCTGATATATGGGAAGAAGAAGATGCAGAGAGCTCCAAAAACGTTGTGCGTTCAAGAG
CAGGTGCAAGTATTGAAACTGTTGTCACTGCATAAGCCATGATCTGATTGAATGAAGGACTATGCTAATCCCTTTGGAGCTTTTGCTTAGAGGATACACTGATTGTAATATGGACTTTTGCCTTTAGCCAAAGGAAATTCCTATTCTTTGTAATCTTGTTGAAGTGTGTATTTGATCTCAAGAATCTGTACTGGATGTTG
TTAATCAATTCCATACAGGTGATCAATAGATAAAATCAATGAATAATCTGTTTTTTTTAACAATATCCCTTCCTTAAGATTAGACAAGATGCTATTTTAATTTTCAACCTCTGCTTTTCTTATTTAATATTGTTCCGATACCTTGGCCTTCATATAAGGACCGTAAGCCTTTACATGGTTGCATTCCTTTATCAGGTTCT
TGTCATTATTACATGGCCTCCCGAAGCTCCATGTTAGCGGGCCATGGATTCTCATAACATTTATAGTTAGGACTCGCAAATGTGGGTCATCGAAAATCGGTCAGTTTCGGCCAGGAACAAGGATATAAAGG