sp|P16128|Y4849_ARATH ----> Uncharacterized protein At4g18490
Intron 1 GTAAATTGCT ... CAATGAACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.84 | 6 | 2 | 5 |
| A2 | 14.29 | 6 | 0 | 2 |
| A3 | 33.33 | 8 | 2 | 6 |
| A4 | 29.41 | 6 | 2 | 3 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | 6.67 | 7 | 1 | 0 |
| A7 | 29.41 | 6 | 3 | 2 |
| A8 | 46.67 | 4 | 3 | 4 |
| A9 | 33.33 | 8 | 4 | 4 |
| A10 | 33.33 | 2 | 2 | 0 |
>TRINITY_DN43365_c5_g1_i1 from sample A7 / Example spliced isoformGTTTCGTCATCAAAAACTTCATCGTTGAGCTCAGGTTCTGGAGAAAAGGTATCATTGCAGAATGCCTCGTCAACTGAAGACAGACTTACTTTAAAGGATTCTCGAAGAGACCAACTGCAGTCCTTAGCTGAAGGGTTTGTTCCCAAATGCTTGGAAATATCACTTGTCACAAGTGGATCCCGGGAGATTGGAACTGACTC
AGAGAAGCAAACTATTGCAACCAAGCAAGATAATTTAGACACATCTTTTGATAACTTGTTCCAAACAGGTGGCTCAAATACCATGAAGAAGACATTTAATCCAATGGAATCCAAACACCCAGACAATGTTTCGTCATCAAAAACTTCATCTTTCCACTCAGCTTCTGGAGAAAAAGTATCATTGCAGAATGCCTCACCAA
TGAAAGACACACTTGCTTTAAAGGATTCTCTAGAGGAGCGACAGCAATCCTTAGCCAAAACTGGTCCTCACCATACAGAAATGCCAGAGTCTGATTCAAGTACTAAGGATTCAAGCCCCTTGAGAAATGAATGCTCCAAATGGAGTTCTGACAAATGTGCGCCAGGAAGCATCTTAAAGAGTTCTGATACACGCAGTGGT
AAGAAGGTACCCATCGATAGGCTAAATACTTTGGTTCAGAAGGATATGGATGATAACAATGAAAGACATATGAATCAATGTCAGAATCCCGAAGCTTCTGGAGAACATCAATATACACCGTCGAAAACTTCTTTTCCGATAATGCAGAGAGAAATCACAACCCGGAAACCTGTTACAACATCAAAACATAAATTGTATCT
TAAGGAGAGCATTGGCAATCAAACCACGAGAGAGGAACCTAAAGCCATGACTGAGGCACTGGTTTCAACATATCGAGAGAACTCTTTGCAGGGATTGAACAAAATAGGCCATACTCCATCCTCGGCAGAACATGGAAAGAGGGAAGCACTGGATATAATTTCTTCTGTATCACAATCTAAGCCCAACCATCACACTCAGA
AAAGAATTCTATCTGAAGTCGCCAACATTACTGAACCTGGAGAGAGAAATGGAAAACATCCACTTCAGGGGAGTTCTAAGCTACTTTATACTGAAACAAAAGCAGCATCTATTATGATCCCTCAGAAGTACCCCCCTAATCATCCTAGCCTGCAGGTTTCCAGGACCATAGCAAAAAATGGCAAATCACCGACAATCTTG
AAGCAGACAAATAAAAAGCTTTTGAGTTCTTCAAAGGCAACGATAAACTTCTCTACAAATATATCCATTTCAAAGAACATTCAGGCATTTGCCGAGCAGAAAAATACATCCTTGTCCCCTTTGCCCCCTCTGAAAAGAAAACCAATGGAGAAATTAATGGCAGAGACACTTAACATGAAACCTTTAAAACGGATATCGGG
CTCCCCACCAGTGACTGAAATCAAGTCAACTGATAATGTCAGGAAAATCCAGATCCATCCACCTATGATGGAAGGCAGGTTTCCAGAAAGGACCTATGGGAAAACTCATATAGCACATTCATCACCATTGACAGTTTCAGAAAACAAATTGGCTAACAGTATGAAGATAACAGAATCCGTTGTCGAAGAAGAGATTTCCA
AAACTGATAGAGAAGTTCAAGTTTTAAGCTATAGTGAACATGCAGATCAACATCTCAACTCTTGTTCACCTTTTGAAATGAACGCTAGGGATTCACAAGATGTCTTGATGCTTGAGAATGACAATATTGTAGAAAAAGCTGATAGTTGCTCAAGGGATCTTGAAGATATGTGCAAGATGCTGAAAAAGAAACACGAAGAA
GCGAAAGACCTCCTTGTGCGTGCAATTGTCAATAACAACTTGTTACTGATGTTAAATCATCCTCTGCATGAAGAAAAAATTCAGGCAGTACAAAAGCATGTATCCCGTATGTTTCCAGAGGGATGTAGGAATTGATGGGAGCAAACGAAATACTTTGCTCAAAGCTGCTTACTGCTGTTAGAAATCCATCTTGTGGGATT
GCCAAGCTTGTTGGAAGTTTCTTATGACGTATTAAGCTCAATGTTCAGATTCAGTTTGAGCTCGTCCTGTTAGTTGTAATGTGCCTGCAATATCCTAAATGACATTCATCCATTAATCAGAAAGTTTACAATTTATTTTTCCT
>TRINITY_DN43365_c5_g1_i3 from sample A7 / Example unspliced isoform:TTAGGAGTTAGCCTAAACGGAGGAGCTGGGATTCAGGTGACAGTACCTGGCTCATTGCTTGCCCCCAAGGCCACACCTTCCCCACTTGTAGTGAGGGAACAACTTTTGAAAGATTTCTGCTGCTGGTGTGCATCTCGGCGGACAACTGAGTGAACAAAAGTGACTATAAGCACAAGATGCATAATCTTAGTGCCTTGAAG
TCCCCCTAACAAGAATTATGAAAAGAGTAGGGTTCTCCTTCATAGCAGGGCTCCTCTCTCATCCTTGCTGGAATTTTAATTACACATGTGGCTATAAGAGTAATGCAATTATATCTCAATACAGGCTTATCCAAGTGCCTTGTTGATCATGGTGCATGAGATATACATATAAACAGGTACATACCATTTTCACCAACTAG
GTGTCCTCGTGTCTAGGATGGAGGCACGTTCAGTATCTATGTCTACAATGCATTGGAACTACATACAATACCCTCTTGTGTGTATTTTCCAATATGGTTCATTTGATGAAAAACACATGCGATAATCAAAACTGTCATCTATAACAAAGGGTTCAAAATACACTGCAACATGTATCATTGTCATGCCACGAGCCATAAAC
AAGGACATGTTAAAGGGACCAAAATTATACCATATAAAAAATGAAAGACAATGAATTGTTTGTGTAAGTTTCTCACTTATCTGTACTATGGAATAAAGGTACCAAAACTATACTATGTCAATCACGAAATACCAAAATTATACATCAAGCATGGAAGACATTGAATTGTTTGTGTAAGTTTCTCACATTTATTCACTGTG
GAAACTTTGGTGTTGCTTGAGCCACGGGCAAATGTGTTAGCATTCATCTTTCATCTCATTTTAGACTAGAATCGAAGTGTATTACTGTTTTCCTATATTATTTTAGTTATGAAATATGATGCATTCTATTGACTGTTTTTATGATTGTTACCAAAGAAATTAATGGCAGAGACACTTAACATGAAACCTTTAAAACGGAT
ATCGGGCTCCCCACCAGTGACTGAAATCAAGTCAACTGATAATGTCAGgtaaattgctataacatcaccataaatctttttagatactcagtatggtcttcagaaaaaaatgtttcagtcgctgatcattaaaaggaaaataagaactgaaaaagttcacaatgaacagGAAAATCCAGATCCATCCACCTATGATGGAA
GGCAGGTTTCCAGAAAGGACCTATGGGAAAACTCATATAGCACATTCATCACCATTGACAGTTTCAGAAAACAAATTGGCTAACAGTATGAAGATAACAGAATCCGTTGTCGAAGAAGAGATTTCCAAAACTGATAGAGAAGTTCAAGTTTTAAGCTATAGTGAACATGCAGATCAACATCTCAACTCTTGTTCACCTTT
TGAAATGAACGCTAGGGATTCACAAGATGTCTTGATGCTTGAGAATGACAATATTGTAGAAAAAGCTGATAGTTGCTCAAGGGATCTTGAAGATATGTGCAAGATGCTGAAAAAGAAACACGAAGAAGCGAAAGACCTCCTTGTGCGTGCAATTGTCAATAACAACTTGTTACTGATGTTAAATCATCCTCTGCATGAAG
AAAAAATTCAGGCAGTACAAAAGCATGTATCCCGTATGTTTCCAGAGGGATGTAGGAATTGATGGGAGCAAACGAAATACTTTGCTCAAAGCTGCTTACTGCTGTTAGAAATCCATCTTGTGGGATTGCCAAGCTTGTTGGAAGTTTCTTATGACGTATTAAGCTCAATGTTCAGATTCAGTTTGAGCTCGTCCTGTTAG
TTGTAATGTGCCTGCAATATCCTAAATGACATTCATCCATTAATCAGAAAGTTTACAATTTATTTTTCCT
Intron 2 ATATCCTTTC ... CAAGCAACAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.88 | 8 | 0 | 1 |
| A2 | 26.67 | 8 | 2 | 4 |
| A3 | 0 | 3 | 0 | 0 |
| A4 | 8.34 | 5 | 1 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 50 | 8 | 7 | 9 |
| A7 | 35 | 13 | 5 | 9 |
| A8 | 26.05 | 32.7 | 11 | 12 |
| A9 | 50.72 | 17 | 18 | 17 |
| A10 | 32.98 | 11.7 | 2.5 | 9 |
>TRINITY_DN43365_c5_g1_i6 from sample A7 / Example spliced isoformTTTTAATCAATTTTATATGAATAATATAAGTTGGAAGGGGTGAGGTTACATTTCTTATCCCCCGAAACCTCTATCCTTGTTTCTCCTTCTGTTTACATGTACTGTTTTGTGACTTTGTCCCTTTTCCCATTAATTCTGGTCACGTATTTTAGTGTACTTCTATTACTAGCTTATTCTAGTTCATTGGATTTATCTGTTTC
CAATGTCCATTGGTTCTTGAAAGAGAGCTTTTTCTTGGCTATCTCAAGATGGACTAAACAGTAAATACATTTGCTATTTGGATTTATTCCCATTGTAAATTTTCATGGAGATAGCTGGACTGACATTTTTTTTATTTTCTCAGATGTGCAAGATGCTGAAAAAGAAACACGAAGAAGCGAAAGACCTCCTTGTGCGTGCA
ATTGTCAATAACAACTTGTTACTGATGTTAAATCATCCTCTGCATGAAGAAAAAATTCAGGCAGTACAAAAGCATGTATCCCGTATGTTTCCAGAGGGATGTAGGAATTGATGGGAGCAAACGAAATACTTTGCTCAAAGCTGCTTACTGCTGTTAGAAATCCATCTTGTGGGATTGCCAAGCTTGTTGGAAGTTTCTTA
TGACGTATTAAGCTCAATGTTCAGATTCAGTTTGAGCTCGTCCTGTTAGTTGTAATGTGCCTGCAATATCCTAAATGACATTCATCCATTAATCAGAAAGTTTACAATTTATTTTTCCT
>TRINITY_DN43365_c5_g1_i2 from sample A7 / Example unspliced isoform:TTTTAATCAATTTTATATGAATAATATAAGTTGGAAGGGGTGAGGTTACATTTCTTATCCCCCGAAACCTCTATCCTTGTTTCTCCTTCTGTTTACATGTACTGTTTTGTGACTTTGTCCCTTTTCCCATTAATTCTGGTCACGTATTTTAGTGTACTTCTATTACTAGCTTATTCTAGTTCATTGGATTTATCTGTTTC
CAATGTCCATTGGTTCTTGAAAGAGAGCTTTTTCTTGGCTATCTCAAGATGGACTAAACAGTAAATACATTTGCTATTTGGATTTATTCCCATTGTAAATTTTCATGGAGATAGCTGGACTGACATTTTTTTTATTTTCTCAGATGTGCAAGATGCTGAAAAAGAAACACGAAGAAGCGAAAGACCTCCTTGTGCGTGCA
ATTGTCAATAACAACTTGTTACTGATGTTAAATCATCCTCTGCATGAAGAAAAAatatcctttcaaatgaagttattctgtgttttttaggcatttcttctattgcaaatttggaacattattctattttgttgttgttctttaacaagcaacacATTCAGGCAGTACAAAAGCATGTATCCCGTATGTTTCCAGAGGGA
TGTAGGAATTGATGGGAGCAAACGAAATACTTTGCTCAAAGCTGCTTACTGCTGTTAGAAATCCATCTTGTGGGATTGCCAAGCTTGTTGGAAGTTTCTTATGACGTATTAAGCTCAATGTTCAGATTCAGTTTGAGCTCGTCCTGTTAGTTGTAATGTGCCTGCAATATCCTAAATGACATTCATCCATTAATCAGAAA
GTTTACAATTTATTTTTCCT