sp|Q9LVB9|OXS3_ARATH ----> Protein OXIDATIVE STRESS 3

Intron 1 GTAAGTCTAA ... CAATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	18.87	43	12	8
A2	6.49	72	5	5
A3	10.89	90	15	7
A4	25	39	16	10
A5	25.37	25	8	9
A6	3.9	271	18	4
A7	7.14	169	22	4
A8	12.32	153	27	16
A9	6.2	227	17	13
A10	4.45	236	15	7

>TRINITY_DN45474_c1_g1_i10 from sample A8 / Example spliced isoform

CTCGATTCAACGGCCTCCTTGGCTTCCTCGGACGACTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACAGATGCGCGATGGCAATGCCGGCCCTCTCTTTCACATGAAGTCTCTCAGAGACAGCCTCCCTTGTCGCAAGAGGGGTTTGTCCAATTTTTTCACCGGCAAATCGCAGTCGTTTACGTCTCT
CGCAGATGTGAAATGCGCGGAAGATCTCGCCAAGCCGGAGAAGAAGCTAAGGAGTTCCCACTGCTGCCATTGCGGGGCG

>TRINITY_DN45474_c1_g1_i15 from sample A8 / Example unspliced isoform:

CTTACGAGCAGCCATGGCGGAAGAGTGCTTCAAATCTACATGTGATTTATCGGCATCTTCTTCTTCTTTTTTTATTTCTTCACCCGTTTCGACGGCCTCCTTGGCTTCCTCGGACGACTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACAGATGCGCGATGGCAATGCCGGCCCTCTCTTTCACATGA
AGTCTCTCAGAGACAGCCTCCCTTGTCGCAAgtaagtctaatgaaaaccctatattcatcaagaaaattgttctttcttcatttcgaacgggagctgctgcaatcttttgttgattttggctgtttctttgagcaattttcagGAGGGGTTTGTCCAATTTTTTCACCGGCAAATCGCAGTCGTTTACGTCTCTCGCAGA
TGTGAAATGCGCGGAAGATCTCGCCAAGCCGGAGAAGAAGCTAAGGAGTTCCCACTGCTGCCATTGCGGGGCG

Intron 2 GTAAGTCTAA ... TAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25	48	20	12
A2	13.79	75	13	11
A3	14.18	115	17	21
A4	14.85	43	4	11
A5	21.65	38	9	12
A6	7.29	294	31.2	15
A7	9.8	184	31	9
A8	12.27	168	27	20
A9	7.08	256	22	17
A10	9.45	254	39	14

>TRINITY_DN45474_c1_g1_i20 from sample A8 / Example spliced isoform

CTTACGAGCAGCCATGGCGGAAGAGTGCTTCAAATCTACATGTGATTTATCGGCATCTTCTTCTTCTTTTTTTATTTCTTCACCCGTTTCGACGGCCTCCTCGGCTTCCTCGGACGACTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACCGATGCCCGATGCCAATGGCAGCCCTCTCTTCGACATGA
AGTCGCTCAGAGACAGCCTCCATTCTCGCAAGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTACGTCACTGGCAGCTGTGAAATGCGTGGAAGACCTTGCCAAGCCGGTGAAGAAGCTCAAGAGTTCCCATAGCTGAGAATTCTGGCAGATGTGAAATGCGTGGAAGACCTCGCCAAGCCGGAGAAGA
AGCTCAAGA

>TRINITY_DN45474_c1_g1_i5 from sample A8 / Example unspliced isoform:

CTTACGAGCAGCCATGGCGGAAGAGTGCTTCAAATCTACATGTGATTTATCGGCATCTTCTTCTTCTTTTTTTATTTCTTCACCCGTTTCGACGGCCTCCTCGGCTTCCTCGGACGACTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACCGATGCCCGATGCCAATGGCAGCCCTCTCTTCGACATGA
AGTCGCTCAGAGACAGCCTCCATTCTCGCAAgtaagtctaatggcaacaaatcgctgtgtcttcgtttccaacgggggctgctgcaatcttttgttgattgttggctgattgtttgcgtaatttgcagGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTACGTCACTGGCAGCTGTGAAATGCGTGGA
AGACCTTGCCAAGCCGGTGAAGAAGCTCAAGAGTTCCCATAGCTGAGAATTCTGGCAGATGTGAAATGCGTGGAAGACCTCGCCAAGCCGGAGAAGAAGCTCAAGAGTTCCTGTGCTGGGAATCGACGATAAAATCATCATTTAAAAGTCAGACCAGTTGATCATCAATACGCTCGGCAGGCTCAGCCGAATCTCTAAGA
TGTGCAAGAAAGTGTGTTCGTGCCCCATGCGAACCGGGAAAGGTTTGAGCTCCGGACCTTTTGTATTTCCACGCAAGAAGCGAAGCAACGGTTTTTAAGGTAATCCCATTTAGCTCCATATTTCAGTATCTTTTTACATAACATTATCTCTGTCACGTATCCGCATAGTATTTAATTATTCCCTTCACATGACGTTGCTG
CTTTTAAAACCTGTCTCTGGTTGGGACAAACTTTATACTGTAAATTTATATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCTGGTTGGGACAAACTTTATACTGTAAATTTATATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCTGGTTGGGACAAACTTTAT

Intron 3 GTAAGTCTAA ... TAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.73	45	14	7
A2	21.69	65	18	7
A3	24.17	91	29	7
A4	14.29	36	6	5
A5	21.43	33	9	5
A6	13.58	229	36	7
A7	13.98	160	26	4
A8	17.09	131	27	7
A9	13.12	192	29	7
A10	14.53	200	34	6

>TRINITY_DN45474_c1_g1_i13 from sample A8 / Example spliced isoform

CTTACGAGCAGCCATGGCGGAAGAGTGCTTCAAATCTACATGTGATTTATCGGCATCTTCTTCTTCTTTTTTTATTTCTTCACCCGTTTCGACGGCCTCCTCGGCTTCCTCGGACGATTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACCGATGCCCGATGGCAATGGCGGCCCTCTCTTCCACATGA
AGTCTCTCAGAGATAACCTCCATTCTCGGAAGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTATGTCTCTGGCAAATGTGAAATTCGTGGAATA

>TRINITY_DN45474_c1_g1_i4 from sample A8 / Example unspliced isoform:

CTTACGAGCAGCCATGGCGGAAGAGTGCTTCAAATCTACATGTGATTTATCGGCATCTTCTTCTTCTTTTTTTATTTCTTCACCCGTTTCGACGGCCTCCTCGGCTTCCTCGGACGATTTCAAGGACAGCGGCAATTCTTCATGGGGTTTCTCGCCTCCACCGATGCCCGATGGCAATGGCGGCCCTCTCTTCCACATGA
AGTCTCTCAGAGATAACCTCCATTCTCGGAAgtaagtctaatggcaacaaatcgccgtgtcttcgttccaacgggggctgctgcaatcttttgttgattgttggctgattctttgcgtaatttgcagGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTATGTCTCTGGCAAATGTGAAATTCGTGGAA
TA

Intron 4 GTAGCTGTTT ... GCATGGTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	56.25	6.7	8	9
A2	49.19	14.9	17	11
A3	56.6	6.7	12	5
A4	54.29	8	17	2
A5	33.33	3	3	0
A6	41.93	49.7	51	20.4
A7	33.96	67.7	60	9.6
A8	50.34	32.8	31	34
A9	35.89	56.2	47.8	15
A10	37.9	43.2	30	22

>TRINITY_DN108780_c0_g1_i14 from sample A4 / Example spliced isoform

TGCAGAAGGATTTAAAGAAACGGAAATTCCGTGACAGAAATTCAAGATTGCCATAGATTTCAAAACCCTATTTTCCTTACGAGCAGCAATGGCTGAAGAGCGATTCATATCGACATGCGATTTTAGTTCATCTTCTTCTTTTTCTATTTCTTCACACGATTCGACGGCGTCCTCGGCTTTCTCGGACGACATCACTGACA
GCGGCAATTCTTCTTGGGGTTTCTCGCCTCCACCGATGCCCGATGCCAATGGCAGCCCTCTCTTCGACATGAAGTCGCTCAGAGACAGCCTCCAGCAATGGCGGCCCTCTCTTCCACATGAAGTCTCTCAAAGCCAGCCTCCCTTCTCGCAAAGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTACGT
CTCTGGCAGATGTGAAATGCGTGGAAGACCTCGCCAAGCCGGAGAAGAAGCTCAAGAGTTCCTGTGCTGGGAATCGACGATAAAATCATCATTTAAAAGTCAGACCAGTTGATCATCAATACGCTCGGCAGGCTCAGCCGAATCTGTAAGATGTGCAAGAAAGTGTGTTCGTGCCCCATGCGAGCCGGGAAAGGTTTGAG
CTCCGGACCTTTTGTATTTCCACGCAAGAAGCGAAGCAACGGTTTTTAAGGTAATCCCATTTAGCTCCATATTTCAGTATCTTTTTACATAACATTATCTCTGTCACGTATCCGCATAATATTTAATTATTCCCTTCACATGACGTTGCTGCTTTTAAAACCTGTCTCTGGTTGGGACAAACTTTATACTGTAAATTTAT
ATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCTGGTTGGGACAAACTTTATACTGTAAATTTATATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCTGGTTGGGACAAACTTTAT

>TRINITY_DN108780_c0_g1_i2 from sample A4 / Example unspliced isoform:

TGCAGAAGGATTTAAAGAAACGGAAATTCCGTGACAGAAATTCAAGATTGCCATAGATTTCAAAACCCTATTTTCCTTACGAGCAGCAATGGCTGAAGAGCGATTCATATCGACATGCGATTTTAGTTCATCTTCTTCTTTTTCTATTTCTTCACACGATTCGACGGCGTCCTCGGCTTTCTCGGACGACATCACTGACA
GCGGCAATTCTTCTTGGGGTTTCTCGCCTCCACCGATGCCCGATGCCAATGGCAGCCCTCTCTTCGACATGAAGTCGCTCAGAGACAGCCTCCAGCAATGGCGGCCCTCTCTTCCACATGAAGTCTCTCAAAGCCAGCCTCCCTTCTCGCAAAGAGGGGTTTGTCCAATTTTTTCACCGGCAAGTCGCAGTCGTTTACGT
CTCTGGCAGATGTGAAATGCGTGGAAGACCTCGCCAAGCCGGAGAAGAAGCTCAAGAGTTCCTGTGCTGGGAATCGACGATAAAATCATCATTTAAAAGTCAGACCAGTTGATCATCAATACGCTCGGCAGGCTCAGCCGAATCTCTAAGATGTGCAAGAAAGgtagctgtttaatctccttcaagctacagcgtagccg
tttaatcgcatccaaaacaaattatataaaggtcacggggtagcagacaataagtaatttagatccagtacccgtttaatcgctgtacataatactccgacatgagcctcttttatctagtgtaaacttctgaaaccctgacgggtttcgattcggagggcagaagaaagccctccgcttccatattacgattactgtaa
tatttgcctcaatgtattgatatttaatttcctttgatgctgttttttgcatggttagTGTGTTCGTGCCCCATGCGAGCCGGGAAAGGTTTGAGCTCCGGACCTTTTGTATTTCCACGCAAGAAGCGAAGCAACGGTTTTTAAGGTAATCCCATTTAGCTCCATATTTCAGTATCTTTTTACATAACATTATCTCTGTC
ACGTATCCGCATAATATTTAATTATTCCCTTCACATGACGTTGCTGCTTTTAAAACCTGTCTCTGGTTGGGACAAACTTTATACTGTAAATTTATATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCTGGTTGGGACAAACTTTATACTGTAAATTTATATTTGTTTAATGAAATTAAATGTATTAAAACCTCTCT
GGTTGGGACAAACTTTAT