sp|Q9MAU6|PDI22_ARATH ----> Protein disulfide-isomerase like 2-2

Intron 1 GTGAGTTTGT ... CCTATGACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	15.38	33	6	0
A2	34.21	25	13	2
A3	28.57	20	8	3
A4	17.39	19	4	0
A5	0	6	0	0
A6	22.41	45	13	0
A7	15.87	53	10	0
A8	27.42	45	17	2
A9	17.91	55	12	0
A10	23.53	52	16	0

>TRINITY_DN105973_c0_g2_i3 from sample A3 / Example spliced isoform

CATCGATCAATCACCTTTCTTCACACATTTCATCTGTGAAAAGTCTGGGTAGTTGATCGCTTTCTTCACAAATTCCAGCTGTGAGAAGTCTGGGTAGTGGTAGTGCTAATGGAGAAGTTTAGGAGTCTGCGAGGGTGTTTTGTGGACATGAGCGTGGCATTATTTTTACTTTTGTTGTGGGAGTCACAACCGGTGGAAGC
TCTGTATGGTCCCTCTTCAGATGTGCTGCTCCTCACTCCCTCAACTTTCAAGTCCAAGGTTTTAAATTCTGACGGGATTGTTCTTGTTGAGTTTTTCGCACCATGGTGTGGTCATTGTCAGGCCCTAACTCCAATCTGGGAAAAGACAGCGGCTATTTTGAAAGGTTTTGTTACAGTTGCAGCTCTTGATGCTGACGCCC
ACAGTTCACTAGCTCAGGAATATGGAATCAAGGGATTTCCAACCATTAAGGTATTCACACCTGGCAAGCCCCCATTGGACTATCAAGGAGCAAGGGATACAAAACCAATAGCAGAATTTGCAATTCAGCAGTTGAAGGCTGTTGTCAAAGACAGGCTAAATGGGAAGACTGGATCAAATAAGAAAAGTTCATCATCAAGT
TCATCAAGTTCATCGGTAGAACTCACTTCAAACAACTTTGATGACATTGTCCTTAAAAGTAAAGATCCATGGCTTGTTGAATTTTATGCTCCTTGGTGTGGGCATTGCAAAAAACTTGCTCCAGAGTGGAAGAAAGCTGCAAATAACTTGAAGGGCAAGGTGAATATGGGGCAAGTCAATTGTGATGCAGAGAAGAGTCT
GATGAGCAGGTTCAATGTGCAAGGCTTTCCAACAATCTTGGTTTTTGGTTCTGACAAGGAGAGTCCAGTGCCTTATGAAGGTGCAAGGACGGCTTCTGCTATTGAATCCTTTGCTCTTGAGCAACTTGAGATGAATGTTTCTCCTCCAGAAGTGGTGGAGCTTACAAGCCCGGAAGTATTGGAAACCAAGTGTGCTTCTT
CAGCAATCTGTTTTGTTAGTTTCCTGCCTGACATTTTAGACACAGGAGCAGAAGGAAGGAATCGTTACCTAGAACAACTCATGTCTGTGGCAGAAAAATTCAAAAGAAGCCCATACAGCTACGTGTGGGCAGCAGCAGGAAAACAGCCTGCTCTTGAAAGGGCAGTTGGTGTTGGTGGCTATGGGTATCCAGCCTTCATA
GCTTTGAACCTTAAAAAGGGTGTCCACGCTCCACTTCGCAGTGCATTTGAGCTTGAACATCTTGTGGATTTTGTGAAGGATGCAGGGCGGGGAGGTAAAGGTAATCTTCCCCTAGAATCTGTTCCTGTTCTTGAGAAAACTGAACCGTGGGATGGGAAAGATGGAGAGATTTTAGAGGAAGACGAGTTCTCACTGGACGA
GCTAATGGGCAATGAGAATAATGATAAAAAAGAAGACTTGTAGGAGATTCGTATTTCAGGCAAAGCAAGATATGTAACAATTTTATAATTCTCCCCAGTTCTTTCTAGAATTATATAGCCGTGTAGGAGATTCATATTTCAGGCAAAGCAAGAAATGGAACAATTTTAGAATTCTGCCCAGTTCTTTTTAGAATTATATA
GCTTGCTGTGATTTATTTATTTATTTTTGTCATCACGACAAGAAATTGGAGAGGTAGAGAATATGATTTAGGCAGGACACGGTTAATTTTTTGATGTTAAATGTAGTTGACACGGTCCAAATAAACGACATCAAAGTATAAATCATTTCAAGACAGTATGCAAGAACCTGAAGCGATTTACTTTTTGCTTCCAGGGTTTT
GAAAGTGAGTTACAGAGAACATGGGAAAGTTAGACATGCATATACAAGGAATGCATGAAGATGATAATGAAACCTGGTAATGTTTAGATGATTCAGCGACATTTTTTTGTTTAGGACTTGAGTTAAT

>TRINITY_DN105973_c0_g2_i1 from sample A3 / Example unspliced isoform:

CATCGATCAATCACCTTTCTTCACACATTTCATCTGTGAAAAGTCTGGGTAGTTGATCGCTTTCTTCACAAATTCCAGCTGTGAGAAGTCTGGGTAGTGGTAGTGCTAATGGAGAAGTTTAGGAGTCTGCGAGGGTGTTTTGTGGACATGAGCGTGGCATTATTTTTACTTTTGTTGTGGGAGTCACAACCGGTGGAAGC
TCTGTATGGTCCCTCTTCAGATGTGCTGCTCCTCACTCCCTCAACTTTCAAGTCCAAGGTTTTAAATTCTGACGGGATTGTTCTTGTTGAGTTTTTCGCACCATGGTGTGGTCATTGTCAGGCCCTAACTCCAATCTGGGAAAAGACAGCGGCTATTTTGAAAGGTTTTGTTACAGTTGCAGCTCTTGATGCTGACGCCC
ACAGTTCACTAGCTCAGGAATATGGAATCAAGGGATTTCCAACCATTAAGGTATTCACACCTGGCAAGCCCCCATTGGACTATCAAGGAGCAAGGGATACAAAACCAATAGCAGAATTTGCAATTCAGCAGTTGAAGGCTGTTGTCAAAGACAGGCTAAATGGGAAGACTGGATCAAATAAGAAAAGTTCATCATCAAGT
TCATCAAGTTCATCGGTAGAACTCACTTCAAACAACTTTGATGACATTGTCCTTAAAAGTAAAGATCCATGGCTTGTTGAATTTTATGCTCCTTGgtgagtttgtcatccttattatatgaattactgttttgattacagttttcttggtacaaatgctgtctgttcgtcatccgtattatgtgaattgccgttttgatt
acagtttccttgccacaaatgctgtctgcttaaaaatgggcaaaaacagatatttgaattaaactttgtgattcttattgcaaaaatattaacctttgcaaccttgcttctgaacaagtgcagtacatgacaaacttgtgccagagcgtacaaacaagaaggctataataagtagaattttattgtctatatatgtgaca
ccatattaactggaagtcttgttttctatcttgctaggttagctggttgcaacttagagattttttgaaataatatgaccaaaggaagtagagcctttacagacaaactaacaaatgatgtgttttgtatcttcctatgacagGTGTGGGCATTGCAAAAAACTTGCTCCAGAGTGGAAGAAAGCTGCAAATAACTTGAA
GGGCAAGGTGAATATGGGGCAAGTCAATTGTGATGCAGAGAAGGTATGATCCCCTGTGCAGACTATTTCCATTGACTATGTCTTT

Intron 2 GTACGTTGGT ... TTTCCTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.53	26	9	7
A2	26.32	21	3	12
A3	24.14	11	3	4
A4	37.14	11	6	7
A5	23.08	5	2	1
A6	15.79	96	11	25
A7	19.39	79	21	17
A8	22.39	104	23	37
A9	18.29	105	16	31
A10	21.15	41	15	7

>TRINITY_DN106779_c7_g1_i5 from sample A4 / Example spliced isoform

CTTGAACTTGAGTAACCATCATCGATCAATCACCTTTCTTCACACATTTCATCTGTGAAAAGTCTGGGTAGTTGATCGCTTTCTTCACAAATTCCAGCTGTGAGAAGTCTGGGTAGTGGTAGTGCTAATGGAGAAGTTTAGGAGTCTGCGAGGGTGTTTTGTGGACATGAGCGTGGCATTATTTTTACTTTTGTTGTGGG
AGTCACAACCGGTGGAAGCTCTGTATGGTCCCTCTTCAGATGTGCTGCTCCTCACTCCCTCAACTTTCAAGTCCAAGGTTTTAAATTCTGACGGGATTGTTCTTGTTGAGTTTTTCGCACCATGGTGTGGTCATTGTCAGGCCCTAACTCCAATCTGGGAAAAGACAGCGGCTATTTTGAAAGGTTTTGTTACAGTTGCA
GCTCTTGATGCTGACGCCCACAGTTCACTAGCTCAGGAATATGGAATCAAGGGATTTCCAACCATTAAGGTATTCACACCTGGCAAGCCCCCATTGGACTATCAAGGAGCAAGGGATACAAAACCAATAGCAGAATTTGCAATTCAGCAGTTGAAGGCTGTTGTCAAAGACAGGCTAAATGGGAAGACTGGATCAAATAA
GAAAAGTTCATCATCAAGTTCATCAAGTTCATCGGTAGAACTCACTTCAAACAACTTTGATGACATTGTCCTTAAAAGTAAAGATCCATGGCTTGTTGAATTTTATGCTCCTTGGTGTGGGCATTGCAAAAAACTTGCTCCAGAGTGGAAGAAAGCTGCAAATAACTTGAAGGGCAAGGTGAATATGGGGCAAGTCAATT
GTGATGCAGAGAAGAGTCTGATGAGCAGGTTCAATGTGCAAGGCTTTCCAACAATCTTGGTTTTTGGTTCTGACAAGGAGAGTCCAGTGCCTTATGAAGGTGCAAGGACGGCTTCTGCTATTGAATCCTTTGCTCTTGAGCAACTTGAGATGAATGTTTCTCCTCCAGAAGTGGTGGAGCTTACAAGCCCGGAAGTATTG
GAAACCAAGTGTGCTTCTTCAGCAATCTGTTTTGTTAGTTTCCTGCCTGACATTTTAGACACAGGAGCAGAAGGAAGGAATCGTTACCTAGAACAACTCATGTCTGTGGCAGAAAAATTCAAAAGAAGCCCATACAGCTACGTGTGGGCAGCAGCAGGAAAACAGTCTGCTCTTGAAAGGGCAGTTGGTGTTGGTGGCTA
TGGGTATCCAGCCTTCATAGCTTTGAACCTTAAAAAGGGTGTCCACGCTCCACTTCGCAGTGCATTTGAGCTTGAACATCTTGTGGATTTTGTGAAGGATGCAGGGCGGGGAGGTAAAGGTAATCTTCCCCTAGAATCTGTTCCTGTTCTTGAGAAAACTGAACCGTGGGATGGGAAAGATGGAGAGATTTTAGAGGAAG
ACGAGTTCTCACTGGACGAGCTAATGGGCAATGAGAATAATGATAAAAAAGAAGACTTGTAGGAGATTCGTATTTCAGGCAAAGCAAGATATGTAACAATTTTATAATTCTCCCCAGTTCTTTATAGAATTATATAGCCGTGTAGGAGATTCATATTTCAGGCAAAGCAAGAAATGGAACAATTTTAGAATTCTGCCCAG
TTCTTTTTAGAATTATATAGCTTGCTGTGATTTATTTATTTATTTTTGTCATCACGACAAGAAATTGGAGAGGTAGAGAATATGATTTAGGCAGGACACGGTTAATTTTTTGATGTTAAATGTAGTTGACACGGTCCAAATAAACGACATCAAAGTATAAATCATTTCAAGACAGTATGCAAGAACCTGAAGCGATTTAC
TTTTTGCTTCCAGGGTTTTGAAAGTGAGTTACAGAGAACATGGGAAAGTTAGACATGCATATACAAGGAATGCATGAAGATGATAATGAAACCTGGTAATGTTTAGATGATTCAGCGACATTTTTTTGTTTAGGA

>TRINITY_DN106779_c7_g1_i7 from sample A4 / Example unspliced isoform:

CTTGAACTTGAGTAACCATCATCGATCAATCACCTTTCTTCACACATTTCATCTGTGAAAAGTCTGGGTAGTTGATCGCTTTCTTCACAAATTCCAGCTGTGAGAAGTCTGGGTAGTGGTAGTGCTAATGGAGAAGTTTAGGAGTCTGCGAGGGTGTTTTGTGGACATGAGCGTGGCATTATTTTTACTTTTGTTGTGGG
AGTCACAACCGGTGGAAGCTCTGTATGGTCCCTCTTCAGATGTGCTGCTCCTCACTCCCTCAACTTTCAAGTCCAAGGTTTTAAATTCTGACGGGATTGTTCTTGTTGAGTTTTTCGCACCATGGTGTGGTCATTGTCAGGCCCTAACTCCAATCTGGGAAAAGACAGCGGCTATTTTGAAAGGTTTTGTTACAGTTGCA
GCTCTTGATGCTGACGCCCACAGTTCACTAGCTCAGGAATATGGAATCAAGGGATTTCCAACCATTAAGGTATTCACACCTGGCAAGCCCCCATTGGACTATCAAGGAGCAAGGGATACAAAACCAATAGCAGAATTTGCAATTCAGCAGTTGAAGGCTGTTGTCAAAGACAGGCTAAATGGGAAGACTGGATCAAATAA
GAAAAGTTCATCATCAAGTTCATCAAGTTCATCGGTAGAACTCACTTCAAACAACTTTGATGACATTGTCCTTAAAAGTAAAGATCCATGGCTTGTTGAATTTTATGCTCCTTGGTGTGGGCATTGCAAAAAACTTGCTCCAGAGTGGAAGAAAGCTGCAAATAACTTGAAGGGCAAGGTGAATATGGGGCAAGTCAATT
GTGATGCAGAGAAGAGTCTGATGAGCAGGTTCAATGTGCAAGGCTTTCCAACAATCTTGGTTTTTGGTTCTGACAAGGAGAGTCCAGTGCCTTATGAAGGTGCAAGGACGGCTTCTGCTATTGAATCCTTTGCTCTTGAGCAACTTGAGATGAATGTTTCTCCTCCAGAAGTGGTGGAGCTTACAAGCCCGGAAGTATTG
GAAACCAAGTGTGCTTCTTCAGCAATCTGTTTTGTTAGTTTCCTGCCTGACATTTTAGACACAGGAGCAGAAGGAAGGAATCGTTACCTAGAACAACTCATGTCTGTGGCAGAAAAATTCAAAAGAAGCCCATACAGCTACGTGTGGGCAGCAGCAGGAAAACAGTCTGCTCTTGAAAGGGCAGTTGGTGTTGGTGGCTA
TGGGTATCCAGCCTTCATAGCTTTGAACCTTAAAAAGGGTGTCCACGCTCCACTTCGCAGTGCATTTGAGCTTGAACATCTTGTgtacgttggtttagagaccaagaatacgatgcccctgtctttcactttagtatagaccgtatgatttgttggccattaccgattagtcacacttgaaacttcgctttcttttatga
aaaacctaatgtttgcatgttggaatttcctccagGGATTTTGTGAAGGATGCAGGGCGGGGAGGTAAAGGTAATCTTCCCCTAGAATCTGTTCCTGTTCTTGAGAAAACTGAACCGTGGGATGGGAAAGATGGAGAGATTTTAGAGGAAGACGAGTTCTCACTGGACGAGCTAATGGGCAATGAGAATAATGATAAAAA
AGAAGACTTGTAGGAGATTCGTATTTCAGGCAAAGCAAGATATGTAACAATTTTATAATTCTCCCCAGTTCTTTATAGAATTATATAGCCGTGTAGGAGATTCATATTTCAGGCAAAGCAAGAAATGGAACAATTTTAGAATTCTGCCCAGTTCTTTTTAGAATTATATAGCTTGCTGTGATTTATTTATTTATTTTTGT
CATCACGACAAGAAATTGGAGAGGTAGAGAATATGATTTAGGCAGGACACGGTTAATTTTTTGATGTTAAATGTAGTTGACACGGTCCAAATAAACGACATCAAAGTATAAATCATTTCAAGACAGTATGCAAGAACCTGAAGCGATTTACTTTTTGCTTCCAGGGTTTTGAAAGTGAGTTACAGAGAACATGGGAAAGT
TAGACATGCATATACAAGGAATGCATGAAGATGATAATGAAACCTGGTAATGTTTAGATGATTCAGCGACATTTTTTTGTTTAGGA