NA ----> NA
Intron 1 GTAATATTCT ... TTTTTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.44 | 27 | 22 | 23 |
| A2 | 39.76 | 25 | 26 | 7 |
| A3 | 51.16 | 21 | 25 | 19 |
| A4 | 56.29 | 11 | 17.3 | 11 |
| A5 | 44.53 | 11 | 5.7 | 12 |
| A6 | 0 | 8 | 0 | 0 |
| A7 | 8.74 | 12 | 2.3 | 0 |
| A8 | 24.14 | 12 | 4.7 | 3 |
| A9 | 3.45 | 14 | 0 | 1 |
| A10 | 20 | 8 | 4 | 0 |
>TRINITY_DN119610_c1_g1_i25 from sample A2 / Example spliced isoformCTTGTTTAACTCTGGTTGGATTGTATATTTCTCTGGTTTTTTTAGGTGCACCGCATTTTGTTTTTTCACTTTCTTTCTATCTTGTTGATGACTTTAGATCATCTACTGGCTCGACCAAAAGACCTACCACAGCTTGGAGTGCATTAAAATGAAGCAATGGAAATTGAAGTTCAATCCGTCCTGAGGTGATACAAAATTTT
GCCAGGTCAATTATTTTTGTGCATGCGATGGGCATGAGGGGCTTGTTAGGAAGATACAGTACTTTTATTCCGATACGTCTTTGAAACCTGTTTATTTTCCGTCTAAAGAAAGGTAGCAAATCTCCAACACATTAAATGAATGTTATTAAATATGAT
>TRINITY_DN119610_c1_g1_i24 from sample A2 / Example unspliced isoform:ATTGGTTTTTACATTTAGAAAGTTCATTTTCTTATTAAACTTCATCTCATTTTCATTTTTCCGGCTGGCCGTTCAACCTGAATAATTCTCAGGGTCTGCTCAGGCTCTCGGTAATTGTTTCAGGCTCCTTGGGAGTCGGATTACTCCCAGATGCCAGTTGACGAAATATAAATCTCAGGTGAATAATGATTGTCATTCTC
ATGATAATGATAGATCATGATAGAATCTGGAGACGGTTATCTAGAAAAAGCTGAAAGAACACCCACTCGCTCCATGATGCCTGCCAAGTTGCCAACGGTCATTTATCAAGAAAGCAAGCAGATCATCTACTGGCTCGACCAAAAGACCTACCACAGCTTGGAGTGCATTAAAATGAAGCAATGGAAATTGAAGTTCAATC
CGTCCTGAGGTGATACAAAATTTTGCCAGgtaatattctgattttttgtcatcggaaagcaaaaattagtttaattttggcccgccgcacctcttaaaatgtctttatgtcttctgatattaattttacatacagccattttttcagatatgtctaacagatttcatggctatcattcaggattaggtgaagctagttta
aaatttaaatatctgtgatactgtttgtttcgatgatgttcttgtatattatgtctctagtcccatttatgtatatttctttaaacgttacatgcattatgtcagcttttatttaagttttgggtaaccttgactatttttcaggacattaatttaattttcgaattcacggttctaaatagcaaactgttccagtgcaa
ttggattcattaattatcataataatcttagatgttttttgccagGTCAATTATTTTTGTGCATGCGATGGGCATGAGGGGCTTGTTAGGAAGATACAGTACTTTTATTCCGATACGTCTTTGAAACCTGTTTATTTTCCGTCTAAAGAAAGGTAGCAAATCTCCAACACATTAAATGAATGTTATTAAATATGATCTCA
ATAAATTTGTTCAGTTTTATCATATAGTAAATTTGATCAGTTTTATTAGGGTTGCCAGCTGCGAACATAAATAATGTCGTGAGAAGCAATTAAGTTAAATTACATTACAGCGGGTTGGTAATTACGGCCGGTTTCCAATCTAAATCAGTTTTACTGTTCATTCCCACTTTCACATTTAAATAGAATTCATGGATTTTCTT
TTAATTAAATATAATTCTATCCCACAAAACCATGTGACCGACCAATTTCTTTCCCGGAGATTAAAAGCGTGACCCGTGGTTCAGAATTCATAGATTTTCTTTAAGCTAATTCTATTGAAAGCGGGACTCGTAGCTGATTTGTTTTTCTGATATGGGTTTAAGTGTTATTTTGGTTCTTGCATGAACTGAGTTCTTTTTTT
GTTTTGATTTACAGTTATTTTTTTAAGATATCAATGCTGCAGAGACTGATGTTATATGTTATTATAGCAATTTGTAGTATGAATCTTTATATTGTTATTATTTTTATATTTCAACCAAGTATATAAGTAATTTTTAGAGTTAAAAAAAAAATTATTGAACATAGAAGTGTATAAGGTAGTAATATTCAGGAGATAGTTAA
GTAGCAATGATATTAGTCTAGAGAATTAATTATTAAAATAATATCTGGAATTCGAGAAAATCATGCTTACATAATAATAGTTAAGGGAGAAATATTTAAATTAGTCATAATAGATCAGTCTAGAGAATTAATTATTAAAATAATGTACGGAAGGATAATGGGATTATTATTGTGTTTCTTCATCAATAATCCTTTGGATG
AGCTACCTTGCTCT
Intron 2 GTCCATCTAT ... ATGACTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.71 | 6 | 12 | 11 |
| A2 | 57.14 | 6 | 4 | 12 |
| A3 | 74.36 | 5 | 12 | 17 |
| A4 | 61.29 | 6 | 5 | 14 |
| A5 | 71.43 | 1 | 1 | 4 |
| A6 | 68.42 | 3 | 7 | 6 |
| A7 | 65.22 | 4 | 5 | 10 |
| A8 | 42.86 | 6 | 3 | 6 |
| A9 | 53.85 | 3 | 5 | 2 |
| A10 | 87.5 | 1 | 6 | 8 |
>TRINITY_DN124105_c1_g1_i2 from sample A1 / Example spliced isoformTTCAACTCGATATTAACAAGTCTTTGCGAATCACAAGTCTCATTCAACTCGATATTAACAAGTCTTTGCGAATCAATGACAATTTAGCAAGAAATCCAGTTCAAATTTAGACAATTCGGTTATAATTGGTTTTTACATTTAGAAAGTTCATTTTCTTATTAAACTTCATCTCATTTTCATTTTTCCGGCTGGCCGTTCAA
CCTGAATAATTCTCAGGGTCTGCTCAGGCTCTCGGTAATTGTTTCAGGCTCCTTGGGAGTCGGATTACTCCCAGATGCCAGTTGACGAAATATAAATCTCAGGTGAATAATGATTGTCATTCTCATGATAATGATAGATCATGATAGAATCTGGAGACGGTTATCTAGAAAAAGCTGAAAGAACACCCACTCGCTCCATG
ATGCCTGCCAAGTTGCCAACGGTCATTTATCAAGAAAGCAAGCAGATCATCTACTGGCTCGACCAAAAGACCTACCACAGCTTGGAGTGCATTAAAATGAAGCAATGGAAATTGAAGTTCAATCCGTCCTGAGGTGATACAAAATTTTGCCAGGCCAATTATTTTTGTGCATGCGATGGGCGAGGGGCTTGTTAGGAAGA
TACAATACTTTTATTCCGGTACGTCTTTGAAACCTGTTTATTTTCCGTGTAAAGAAAGGTAGCAAATCTCC
>TRINITY_DN124105_c1_g1_i6 from sample A1 / Example unspliced isoform:TTCAACTCGATATTAACAAGTCTTTGCGAATCACAAGTCTCATTCAACTCGATATTAACAAGTCTTTGCGAATCAATGACAATTTAGCAAGAAATCCAGTTCAAATTTAGACAATTCGGTTATAATTGGTTTTTACATTTAGAAAGTTCATTTTCTTATTAAACTTCATCTCATTTTCATTTTTCCGGCTGGCCGTTCAA
CCTGAATAATTCTCAGGGTCTGCTCAGGCTCTCGGTAATTGTTTCAGGCTCCTTGGGAGTCGGATTACTCCCAGATGCCAGTTGACGAAATATAAATCTCAGGTGAATAATGATTGTCATTCTCATGATAATGATAGATCATGATAGAATCTGGAGACGGTTATCTAGAAAAAGCTGAAAGAACACCCACTCGCTCCATG
ATGCCTGCCAAGTTGCCAACGGTCATTTATCAAGAAAGCAAGCAGgtccatctatttaaggaagccactgcaggcttagattgttccatgttctttactttttattttattcagactgatcttggattgatttattttctggcgttaccattcttccgctcccgcttgcttattttatttgttttcttgttattctgttc
ttttcattttctttcatctgttgatgactttagatctcttcctgttgcttgttatctctggttggattgtatatttctctggtttttttaggtgcaccgcattttgttttttcactttctttctatcttgttgatgactttagATCATCTACTGGCTCGACCAAAAGACCTACCACAGCTTGGAGTGCATTAAAATGAAG
CAATGGAAATTGAAGTTCAATCCGTCCTGAGGTGATACAAAATTTTGCCAGGTAATATTCTGATTTTTTGTCATCCGAAAGCAAAAATTAGTTTAATTTTGGCCCGCCGCACCTCTTAAAATGTCTTTATGTCTTCTGATATTAATTTTACATACAGCCATTTTTTCAAATATGTCAACAGATTTCATGGCTATCATTCA
GGATTAGGTGTTTCATGGCTATCATTCAGGATTAGGTGTTTCATGGCTATCATTCAGGATT