NA ----> NA
Intron 1 GTATATTGGA ... ATTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.98 | 71 | 17 | 23 |
| A2 | 17.36 | 50 | 9 | 12 |
| A3 | 18.03 | 50 | 7 | 15 |
| A4 | 18.52 | 44 | 12 | 8 |
| A5 | 17.39 | 19 | 5 | 3 |
| A6 | 20.85 | 131 | 31 | 38 |
| A7 | 18.06 | 211 | 44 | 49 |
| A8 | 18.76 | 236 | 50 | 59 |
| A9 | 18.7 | 187 | 51 | 35 |
| A10 | 15.05 | 175 | 28 | 34 |
>TRINITY_DN39388_c0_g1_i2 from sample A7 / Example spliced isoformTAAACTTGGATTTTGATCTAGGTATTCAAATCTGGCGCCATTTCTTCAAGATATCTCTCCAAGTCTCACTCCTTACAACTGCATTTGATTGAAACGTACAAACACAGACAGAGAAGAGGTAGCCATGGACAGTCACGAAGACGATTTGGAGCTGCTTCTCTCCCTCCAACACCATCGGGAGGAGGAGGATCAAGTCCGTG
AAACACCCCCTGCTTCTCCATCACCAGTCACAGGCTATTTTTCCGATGAAGATAGACCGAAGCTCGGAAAGCCTCTGGGAATGGCAGCCTTCAAAGATGTTGTCAAGGATTCTCTTCCAGACCCACCAAAGATGAACCTGCCTGCAGCTCCTAGAAACCCCAGCAATCCTTCAAAACCTCAGTCGACTAATGAGATCGAA
GTTGAAAGATATTCTGGCCTGCGAATCAGGAATCGGTTGGTGTCAGCAGGGAGTATGATCACCCGGTTCTCTGATATTCGATTCATCCGTTTTCAGGCAATTAGAACTGCTATGACGGGTGATAATATTACGGGCTGCTGGGCAACAGTTGGTGTGCTGACAGAAAAAGGAAATCCCAAATTAAGTAGCACTGGAAAGAA
TTTTGCTGTATGGAAACTAGGATCACTCGATGAAACTACTATTTCTCTTTTCTTATTTGGCGATGCATATACCCGTCACTGGAAGGAATCGCCCGGGAGTATCTTATCAATATTCAATGCCAAAATCCGCCGTGAGGACAAGGGAAATGAACTTTCTCTTAGTGTATTTGCAGTTGACCAAATTGTGAAATTGGGAACTT
CTGTGGACTATGGTGTCTGCAAAGGGAAGCGAAAGGATGGAATGCCATGCACTGTAATTATAAACCAACGCCGTGGGGCATATTGTCAATACCATATTTCTGAAACACGTAGAAAATATACTACTAAACGCGCAGAACTGAGTGGGGGAAATCTGGCAACAGCGTTTCGTAATCCTACTAAATCACAAGGGGTTTATATG
GTGAAACCTCTAGTAGAAAATGCTAATAATGATAAGCTTCGCAGACCTATAAGAATAATGTCTGAAGGTGATTTGAGAAAGGCTCTCAGTAATGCAGACAAAGTGACAACTAAGCACCAATCGCAGGGAATTAGGTTCCTTGCAAAAGTTGCAAATGCAGAGAATATTGACCCAAAGGCCGGCGACGGAAAATCTGATAT
CCAAACAAATAAAGTAAAACAGTATGAGCAGTATCTCAAGAAAAGGGCTTCCTCTGCTACCAAGGTGAAAGAAGTTTCAGGAAAGCAAGAACCTGAAGCTAAAAGGAAGAAGAACATGCAAAATCCTGATGATTTGATTGAGTTAGATATTGAAGATTAAGAAGATGCAATGGCAAAAATTATGAATTATTGCTCCTAAC
CTTTCAATTGTGGAGTGACAAGTCTGGGCTGTTTGCTTATGCCACTCAAAAAAAATCTTGTCCCAAGAATATCTTGCGTGGCTAGGCTTATGGCATAGATCACCTAAATTGTAAAAGCTTTTATTTAAGGTGGTTAATGAATTTGGCCTTAGGTCCCAATTCTGTGATGTGGCTATAAGGATTTTCAATTTTAGCCCTCA
AATTAAAGACACTGAAGATGTTTTACATGGATGTGGACATTTTTTTGTTTTCCCGGTTTAGTATTACACATGATCAAGGGCAAGGAAAGTTTGGCATCCAAACCTTATGTGAATGTGTATGGACACCTGAAATTTCCTGGTAGTTCCAGTCACAACTGCAGTTATTCCATGGTTGTGATGTGTTTCTAAAGTGTATATTG
CTCAGTAGGTAGTGGTAATCTTCAACAGAAAACTTGGCAATTATTGTTCAAATGGAGATCTAATTCTCAACTGTAAATATCTTCCTGAGAAATCTAGTGGTGCCAAGTGATAAATAAGTATTAACTTTGTAGTAGCATGACCTCATGATATGACATTGACATGTCACAAGGATGTTACACTGAGATGTATTTGCAGTAAC
TGTATCAGTAGTTATATGCATGAGCAATCAACTGCCATTAATGATGTTATAGTGATGTTTTTTGCAGTAATTGTATCAAGAGTCACATGTATGAGCATCAACTTCAATAGACGATTACTAGCAAAACACATCTCCGATCATGCATGGAGGCCTGATATCATCATCTTTCGATAGTGTTCATCTTAATGCTCGAGATCCTC
TTACATATCGGTTTGATGTTGGAAGACCCTTTAGTTGTTCACGAAATGTACTAGAACTGTCTTAGGTTGTCATGCCAAATTGACATGTTGATAAAATAACACTTAGGAGTTCTAATATCAAATTGATTTGAATGGAATTAAAACCTCTTGTTTGTGTTTTTATACTGTATGATGTATCTCAACATGAGTAGTGTACATTT
TAATATCAAGCGACTCGCTTAATTTAACTTCCGTCACAAGACTAGTTGATATTGACTAGTCTTGAAGACTATTCTTTGTTCTTGGAGTGGTCTCAAGGTCATGGTGTAACTGCGTTCC
>TRINITY_DN39388_c0_g1_i1 from sample A7 / Example unspliced isoform:TAAACTTGGATTTTGATCTAGGTATTCAAATCTGGCGCCATTTCTTCAAGATATCTCTCCAAGTCTCACTCCTTACAACTGCATTTGATTGAAACGTACAAACACAGACAGAGAAGAGGTAGCCATGGACAGTCACGAAGACGATTTGGAGCTGCTTCTCTCCCTCCAACACCATCGGGAGGAGGAGGATCAAGTCCGTG
AAACACCCCCTGCTTCTCCATCACCAGTCACAGGCTATTTTTCCGATGAAGATAGACCGAAGCTCGGAAAGCCTCTGGGAATGGCAGCCTTCAAAGATGTTGTCAAGGATTCTCTTCCAGACCCACCAAAGATGAACCTGCCTGCAGCTCCTAGAAACCCCAGCAATCCTTCAAAACCTCAGTCGACTAATGAGATCGAA
GTTGAAAGATATTCTGGCCTGCGAATCAGGAATCGGTTGGTGTCAGCAGGGAGTATGATCACCCGGTTCTCTGATATTCGATTCATCCGTTTTCAGGCAATTAGAACTGCTATGACGGGTGATAATATTACGGGCTGCTGGGCAACAGTTGGTGTGCTGACAGAAAAAGGAAATCCCAAATTAAGTAGCACTGGAAAGAA
TTTTGCTGTATGGAAACTAGGATCACTCGATGAAACTACTATTTCTCTTTTCTTATTTGGCGATGCATATACCCGTCACTGGAAGGAATCGCCCGGGAGTATCTTATCAATATTCAATGCCAAAATCCGCCGTGAGGACAAGGGAAATGAACTTTCTCTTAGTGTATTTGCAGTTGACCAAATTGTGAAATTGGGAACTT
CTGTGGACTATGGTGTCTGCAAAGGGAAGCGAAAGGATGGAATGCCATGCACTGTAATTATAAACCAACGCCGTGGGGCATATTGTCAATACCATATTTCTGAAACACGTAGAAAATATACTACTAAACGCGCAGAACTGAGTGGGGGAAATCTGGCAACAGCGTTTCGTAATCCTACTAAATCACAAGGGGTTTATATG
GTGAAACCTCTAGTAGAAAATGCTAATAATGATAAGCTTCGCAGACCTATAAGAATAATGTCTGAAGGTGATTTGAGAAAGGCTCTCAGTAATGCAGACAAAGTGACAACTAAGCACCAATCGCAGGGAATTAGGTTCCTTGCAAAAGTTGCAAATGCAGAGAATATTGACCCAAAGGCCGGCGACGGAAAATCTGATAT
CCAAACAAATAAAGTAAAACAGTATGAGCAGTATCTCAAGAAAAGGGCTTCCTCTGCTACCAAGGTGAAAGAAGTTTCAGGAAAGCAAGAACCTGAAGCTAAAAGGAAGAAGAACATGCAAAATCCTGATGATTTGATTGAGTTAGATATTGAAGATTAAGAAGATGCAATGgtatattggagaaaaaatgattaaagac
cttttcagtagaacattttttcctgattgtcttatatacattagctgattttctgtgccagcctatatacctagagatatttgttgatacttaacttttatgcttatgaatttttgcagGCAAAAATTATGAATTATTGCTCCTAACCTTTCAATTGTGGAGTGACAAGTCTGGGCTGTTTGCTTATGCCACTCAAAAAA
AATCTTGTCCCAAGAATATCTTGCGTGGCTAGGCTTATGGCATAGATCACCTAAATTGTAAAAGCTTTTATTTAAGGTGGTTAATGAATTTGGCCTTAGGTCCCAATTCTGTGATGTGGCTATAAGGATTTTCAATTTTAGCCCTCAAATTAAAGACACTGAAGATGTTTTACATGGATGTGGACATTTTTTTGTTTTCC
CGGTTTAGTATTACACATGATCAAGGGCAAGGAAAGTTTGGCATCCAAACCTTATGTGAATGTGTATGGACACCTGAAATTTCCTGGTAGTTCCAGTCACAACTGCAGTTATTCCATGGTTGTGATGTGTTTCTAAAGTGTATATTGCTCAGTAGGTAGTGGTAATCTTCAACAGAAAACTTGGCAATTATTGTTCAAAT
GGAGATCTAATTCTCAACTGTAAATATCTTCCTGAGAAATCTAGTGGTGCCAAGTGATAAATAAGTATTAACTTTGTAGTAGCATGACCTCATGATATGACATTGACATGTCACAAGGATGTTACACTGAGATGTATTTGCAGTAACTGTATCAGTAGTTATATGCATGAGCAATCAACTGCCATTAATGATGTTATAGT
GATGTTTTTTGCAGTAATTGTATCAAGAGTCACATGTATGAGCATCAACTTCAATAGACGATTACTAGCAAAACACATCTCCGATCATGCATGGAGGCCTGATATCATCATCTTTCGATAGTGTTCATCTTAATGCTCGAGATCCTCTTACATATCGGTTTGATGTTGGAAGACCCTTTAGTTGTTCACGAAATGTACTA
GAACTGTCTTAGGTTGTCATGCCAAATTGACATGTTGATAAAATAACACTTAGGAGTTCTAATATCAAATTGATTTGAATGGAATTAAAACCTCTTGTTTGTGTTTTTATACTGTATGATGTATCTCAACATGAGTAGTGTACATTTTAATATCAAGCGACTCGCTTAATTTAACTTCCGTCACAAGACTAGTTGATATT
GACTAGTCTTGAAGACTATTCTTTGTTCTTGGAGTGGTCTCAAGGTCATGGTGTAACTGCGTTCC