sp|Q9SIV5|C3H19_ARATH ----> Zinc finger CCCH domain-containing protein 19

Intron 1 GTATGTCCAT ... TGCATTCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	30.77	9	2	4
A2	20	4	0	1
A3	0	11	0	0
A4	0	2	0	0
A5	62.5	2	0	3
A6	0	5	0	0
A7	0	4.5	0	0
A8	0	5.5	0	0
A9	16.67	25	0	5
A10	29.16	5	0	2

>TRINITY_DN127140_c2_g5_i2 from sample A1 / Example spliced isoform

CTACTGATGAAAAGGAAAACAGGAAAAGGAACCTTTTTGAGGAAGCTAACAAACAAGGTCTCTTTGTACAAAATAAATGTGGCTCAACTTACATGATTCCAAATACAACATTCAATGTTGGAATGTTGGATCTTACAAATCCTGCAGCTCGCAGTTGGTTCAAGGGCATCTTGCATGAGATGGTAGAGACTGGAATAAAG
GGCTGGATGGCAGATTTTGGAGAGGGACTTCCTTTGGATGCTTGCCTTTTCTCAGGGGAAGATCCAATTTCTGCTCATAATAGATACCCTTCACTGTGGGCTGAAGTCAATAGAGAGTTTGTTGAAGAATGGAAAGAAAAACAACAGGACGATCTGAGGAAATTTGAAACAATAAAGGAGGGTTTGGATGAAGAACAATT
GGTGTTTTTCATGAGGGCTGGTTTTCGGGAAACTCCAAGATGGGCAACTTTATTCTGGGAAGGTGATCAGATGACGAGATGGCAGAGAAATGATGGAATCAAGAGTGCCATTGTAGGTCTGCTTAGCAGTGGTCTTTCGGGCTTTGCATTAAATCACAGTGACATTGGAGGTTACTGTACTGTCAATCTCCCTTTCTCAC
CATATAGGAGAAGTGAAGAATTGCTATTACGTTGGATGGAGATGAATTCATTCACGACAATCTTTCGTACACATGAAGGAAATTCGCCATCTGCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAAGGTTTTA
CCAACCCTGCGCACTGAGGTATCTTAGACCTGAGACTTGC

>TRINITY_DN127140_c2_g5_i1 from sample A1 / Example unspliced isoform:

CAATCTTTCGTACACATGAAgtatgtccatagctttgttttgtataatgcagctgtactgtggtgatgtgcattctagGGAAATTCGCCATCTGCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAAGGTTTT
ACCAACCCTGCGCACTGAGGTATCTTAGACCTGAGACTTGC

Intron 2 GTTGGGTCTC ... TGGCCCCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	4
A2	100	0	1	5
A3	64.71	6	11	2
A4	55.56	4	5	2
A5	50	1	1	0
A6	61.11	7	11	3
A7	70.37	8	19	2
A8	100	0	17	7
A9	78.95	4	15	2
A10	66.67	9	18	4

>TRINITY_DN44117_c4_g4_i1 from sample A9 / Example spliced isoform

GGAATTGGGAAGTAGATACAATACATTATCCTGGCTGGAGGCAATTAGTAGAAGAACTTCATTCCAATGGCATTTTAACAATGACCTACTGTAACCCCTGTTTAGTCCCTACTGATGAAAAGGAAAACAGGAAAAGGAACCTTTTTGAGGAAGCTAACAAACAAGGTCTCTTTGTACAAAATAAATGTGGCTCAACTTAC
ATGATTCCAAATACAACATTCAATGTTGGAATGTTGGATCTTACAAATCCTGCAGCTCGCAGTTGGTTCAAGGGCATCTTGCATGAGATGGTAGAGACTGGAATAAAGGGCTGGATGGCAGATTTTGGAGAGGGACTTCCTTTGGATGCTTGCCTTTTCTCAGGGGAAGATCCAATTTCTGCTCATAATAGATACCCTTC
ACTGTGGGCTGAAGTCAATAGAGAGTTTGTTGAAGAATGGAAAGAAAAACAACAGGACGATCTGAGGAAATTTGAAACAATAAAGGAGGGTTTGGATGAAGAACAATTGGTGTTTTTCATGCGGGCTGGTTTTCGGGAAACTCCAAGATGGGCAACTTTATTCTGGGAAGGTGATCAGATGACGAGATGGCAGAGAAATG
ATGGAATCAAGAGTGCCATTGTAGGTCTGCTTAGCAGTGGTCTTTCGGGCTTTGCATTAAATCACAGTGACATTGGAGGTTACTGTACTGTCAATCTCCCTTTCTCACCATATAGGAGAAGTGAAGAATTGCTATTACGTTGGATGGAGATGAATTCATTCACGACAATCTTTCGTACACATGAAGGAAATTCGCCATCT
GCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAAGGAAGCTGCTACAAAGGGACTTCCAGTTGTTAGACATCTTTTTCTTCATTACCCACATGACAAGTATGTGCAGCAGCTAACATTCCAACAGTTTTTAGT
GGGGTCTGAAGTTTTGGTGGTGCCTGTTGTGGACAAAGGTAGGAATCAAGTAAAAGCCTATTTTCCTGGAGGAGAGGATTGGCAACATATTTGGACAGGAAGGATCTTCAGCCCCCCAATGTCATCTGGCATGGAAGCTTGGATTTATGCTCCCTTGGGGTACCCTGCAGTATTTGTGAAGGTTTTACCAACCCTGCGCA
CTGAGGTATCTTAGACCTGAGACTTGCTTG

>TRINITY_DN44117_c4_g4_i2 from sample A9 / Example unspliced isoform:

GGAATTGGGAAGTAGATACAATACATTATCCTGGCTGGAGGCAATTAGTAGAAGAACTTCATTCCAATGGCATTTTAACAATGACCTACTGTAACCCCTGTTTAGTCCCTACTGATGAAAAGGAAAACAGGAAAAGGAACCTTTTTGAGGAAGCTAACAAACAAGGTCTCTTTGTACAAAATAAATGTGGCTCAACTTAC
ATGATTCCAAATACAACATTCAATGTTGGAATGTTGGATCTTACAAATCCTGCAGCTCGCAGTTGGTTCAAGGGCATCTTGCATGAGATGGTAGAGACTGGAATAAAGGGCTGGATGGCAGATTTTGGAGAGGGACTTCCTTTGGATGCTTGCCTTTTCTCAGGGGAAGATCCAATTTCTGCTCATAATAGATACCCTTC
ACTGTGGGCTGAAGTCAATAGAGAGTTTGTTGAAGAATGGAAAGAAAAACAACAGGACGATCTGAGGAAATTTGAAACAATAAAGGAGGGTTTGGATGAAGAACAATTGGTGTTTTTCATGCGGGCTGGTTTTCGGGAAACTCCAAGATGGGCAACTTTATTCTGGGAAGGTGATCAGATGACGAGATGGCAGAGAAATG
ATGGAATCAAGAGTGCCATTGTAGGTCTGCTTAGCAGTGGTCTTTCGGGCTTTGCATTAAATCACAGTGACATTGGAGGTTACTGTACTGTCAATCTCCCTTTCTCACCATATAGGAGAAGTGAAGAATTGCTATTACGTTGGATGGAGATGAATTCATTCACGACAATCTTTCGTACACATGAAGGAAATTCGCCATCT
GCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAAGGAAGCTGCTACAAAGGGACTTCCAGTTGTTAGACATCTTTTTCTTCATTACCCACATGACAAGTATGTGCAGCAGCTAACATTCCAACAGTTTTTAGT
GGGGTCTGAAGTTTTGGTGGTGCCTGTTGTGGACAAAGGTAGGAATCAAGTAAAAGCCTATTTTCCTGGAGGAGAGGATTGGCAACATATTTGGACAGGAAGGATCTTCAGCCCCCCAATGTCATCTGGCATGGAAGCTTGGATTTATGCTCCCTTGGGGTACCCTGCAGTATTTGTGAAGgttgggtctcttattggaa
caacttttatgcaaaatctgctagatttgggtgtctgcatgatgttacctcctgcagaagccaactagctttctcctgatacaaatgacactagccctgcttgctttgtaaacacaaattctttggccccaagGTTTTACCAACCCTGCGCACTGAGGTATCTTAGACCTGAGACTTGCTTG

Intron 3 GTATGTTTTG ... AATAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.81	8	2	3
A2	25	3	2	0
A3	20	6	2	1
A4	100	0	6	5
A5	33.33	1	1	0
A6	37.5	5	4	2
A7	33.33	8	8	0
A8	65.22	4	13	2
A9	37.5	10	10	2
A10	55.56	4	6	4

>TRINITY_DN44117_c4_g4_i4 from sample A9 / Example spliced isoform

GGAATTGGGAAGTAGATACAATACATTATCCTGGCTGGAGGCAATTAGTAGAAGAACTTCATTCCAATGGCATTTTAACAATGACCTACTGTAACCCCTGTTTAGTCCCTACTGATGAAAAGGAAAACAGGAAAAGGAACCTTTTTGAGGAAGCTAACAAACAAGGTCTCTTTGTACAAAATAAATGTGGCTCAACTTAC
ATGATTCCAAATACAACATTCAATGTTGGAATGTTGGATCTTACAAATCCTGCAGCTCGCAGTTGGTTCAAGGGCATCTTGCATGAGATGGTAGAGACTGGAATAAAGGGCTGGATGGCAGATTTTGGAGAGGGACTTCCTTTGGATGCTTGCCTTTTCTCAGGGGAAGATCCAATTTCTGCTCATAATAGATACCCTTC
ACTGTGGGCTGAAGTCAATAGAGAGTTTGTTGAAGAATGGAAAGAAAAACAACAGGACGATCTGAGGAAATTTGAAACAATAAAGGAGGGTTTGGATGAAGAACAATTGGTGTTTTTCATGCGGGCTGGTTTTCGGGAAACTCCAAGATGGGCAACTTTATTCTGGGAAGGTGATCAGATGACGAGATGGCAGAGAAATG
ATGGAATCAAGAGTGCCATTGTAGGTCTGCTTAGCAGTGGTCTTTCGGGCTTTGCATTAAATCACAGTGACATTGGAGGTTACTGTACTGTCAATCTCCCTTTCTCACCATATAGGAGAAGTGAAGAATTGCTATTACGTTGGATGGAGATGAATTCATTCACGACAATCTTTCGTACACATGAAGGAAATTCGCCATCT
GCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAAGGAAGCTGCTACAAAGGGACTTCCAGTTGTTAGACATCTTTTTCTTCATTACCCACATGACAAGTATGTGCAGCAGCTAACATTCCAACAGTTTTTAGT
GGGGTCTGAAGTTTTGGTGGTGCCTGTTGTGGACAAAGGTAGGAATCAAGTAAAAGCCTATTTTCCTGGAGGAGAGGATTGGCAACATATTTGGACAGGAAGGATCTTCAGCCCCCCAATGTCATCTGGCATGGAAGCTTGGATTTATGCTCCCTTGGGGTACCCTGCAGTATTTGTGAAGGTTGGGTCTCTTATTGGAA
CAACTTTTATGCAAAATCTGCTAGATTTGGGTGTCTGCATGATGTTACCTCCTGCAGAAGCCAACTAGCTTTCTCCTGATACAAATGACACTAGCCCTGCTTGCTTTGTAAACACAAATTCTTTGGCCCCAAGGCATACTCTACTCCAATCCAGGCCTGAATACTAAAATGTTTTTGAGTCTGACCATGTTGGCTGGCAA
GAGCTTAGATGTCAGGGATACATACTGAGAGTGAGCACACATGCAATTCCTCGTCTTAGAAAGCAAGAGATGGGCCTGTTGGCCACCTCTGCAATAGGGAGGAAGCCACTGTGAAGTTCCAGTGATATAAACAAAGTCATTTTGTAATTTACATATTAGCATTTTGAGTTTGAATGTGATGCAGGATAACCCCACATTTT
CATTATTCTTCAACTTCTCTTATGGAGATTTGAAATACTC

>TRINITY_DN44117_c4_g4_i3 from sample A9 / Example unspliced isoform:

GGAATTGGGAAGTAGATACAATACATTATCCTGGCTGGAGGCAATTAGTAGAAGAACTTCATTCCAATGGCATTTTAACAATGACCTACTGTAACCCCTGTTTAGTCCCTgtatgttttgcagtcttttgaatgctttgagttatgccgaaaaaaacttattctggggagaggctttttggttaatgtggtggctttgaa
ataatgcagACTGATGAAAAGGAAAACAGGAAAAGGAACCTTTTTGAGGAAGCTAACAAACAAGGTCTCTTTGTACAAAATAAATGTGGCTCAACTTACATGATTCCAAATACAACATTCAATGTTGGAATGTTGGATCTTACAAATCCTGCAGCTCGCAGTTGGTTCAAGGGCATCTTGCATGAGATGGTAGAGACTGG
AATAAAGGGCTGGATGGCAGATTTTGGAGAGGGACTTCCTTTGGATGCTTGCCTTTTCTCAGGGGAAGATCCAATTTCTGCTCATAATAGATACCCTTCACTGTGGGCTGAAGTCAATAGAGAGTTTGTTGAAGAATGGAAAGAAAAACAACAGGACGATCTGAGGAAATTTGAAACAATAAAGGAGGGTTTGGATGAAG
AACAATTGGTGTTTTTCATGCGGGCTGGTTTTCGGGAAACTCCAAGATGGGCAACTTTATTCTGGGAAGGTGATCAGATGACGAGATGGCAGAGAAATGATGGAATCAAGAGTGCCATTGTAGGTCTGCTTAGCAGTGGTCTTTCGGGCTTTGCATTAAATCACAGTGACATTGGAGGTTACTGTACTGTCAATCTCCCT
TTCTCACCATATAGGAGAAGTGAAGAATTGCTATTACGTTGGATGGAGATGAATTCATTCACGACAATCTTTCGTACACATGAAGGAAATTCGCCATCTGCAAATAAGCAATTCTATTCAAATGATCGGACCTTATCACACTTTGCACGTTTTGCTAAGGTTTACAAGGCTTGGGAGTTCTTTCGCATTCAGCTTGTGAA
GGAAGCTGCTACAAAGGGACTTCCAGTTGTTAGACATCTTTTTCTTCATTACCCACATGACAAGTATGTGCAGCAGCTAACATTCCAACAGTTTTTAGTGGGGTCTGAAGTTTTGGTGGTGCCTGTTGTGGACAAAGGTAGGAATCAAGTAAAAGCCTATTTTCCTGGAGGAGAGGATTGGCAACATATTTGGACAGGAA
GGATCTTCAGCCCCCCAATGTCATCTGGCATGGAAGCTTGGATTTATGCTCCCTTGGGGTACCCTGCAGTATTTGTGAAGGTTGGGTCTCTTATTGGAACAACTTTTATGCAAAATCTGCTAGATTTGGGTGTCTGCATGATGTTACCTCCTGCAGAAGCCAACTAGCTTTCTCCTGATACAAATGACACTAGCCCTGCT
TGCTTTGTAAACACAAATTCTTTGGCCCCAAGGCATACTCTACTCCAATCCAGGCCTGAATACTAAAATGTTTTTGAGTCTGACCATGTTGGCTGGCAAGAGCTTAGATGTCAGGGATACATACTGAGAGTGAGCACACATGCAATTCCTCGTCTTAGAAAGCAAGAGATGGGCCTGTTGGCCACCTCTGCAATAGGGAG
GAAGCCACTGTGAAGTTCCAGTGATATAAACAAAGTCATTTTGTAATTTACATATTAGCATTTTGAGTTTGAATGTGATGCAGGATAACCCCACATTTTCATTATTCTTCAACTTCTCTTATGGAGATTTGAAATACTC