NA ----> NA
Intron 1 GTGATTAGCT ... GGCTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.2 | 150 | 0 | 29 |
| A2 | 13.56 | 102 | 0 | 16 |
| A3 | 14.29 | 126 | 0 | 21 |
| A4 | 7.23 | 77 | 0 | 6 |
| A5 | 19.44 | 29 | 0 | 7 |
| A6 | 22.22 | 14 | 0 | 4 |
| A7 | 12.64 | 159 | 0 | 23 |
| A8 | 11.48 | 108 | 0 | 14 |
| A9 | 11.59 | 145 | 0 | 19 |
| A10 | 8.54 | 150 | 0 | 14 |
>TRINITY_DN110272_c0_g1_i1 from sample A4 / Example spliced isoformCAAAAATAGAAGTAAAATATTAAAATTAAAATTGCCATAGCATACAACTTACCAAATGCCATAGTTCTGTTGTTATAAACTTCCACTCCACTCTCGCTAGGAACAACCCACATTACTCTGCCCCTCTCTGTTCGGGCAGTGCAACAGTAAAGCTCTACTCTTTCCTGCTACCACGCTTTTACTACGCAAGATTCTTACAG
GCTTCATCACCCGCCATAAACCATCTTATGCCATTAGTTATTTTTTCATCGTTTACAAGCTAGGTCGTTGTAAGGTTTTATCAGCCGAAAGCTTTGGAAAATCAAACATATTTTGATTTTCCACCGGGTGTTGGAAGTGATTTCTTTTCCGTTCAAATCCGGTTTTCTGAAATCCACATGACGAGCGGAGGCCGAAGACA
GTTTGCACAGCAGCTTTAGACTCTATACTTACTGTATAAGTTTCATAGCAAGACATCTCAACGATGGAAGAAATTTGCTATTAACGAGGATTTTAAATTTATTTTCACTGAGAAGTTCAAAGATTATATAGGAGCAATGGAGCAATCTCATAAGGCCCATAGAGCCCGTCAGTCTGGACCATCTTCGAAGAAAAAAGAGA
TAACAGACAAAAAGAAGCGTGGACTGTCTGGTGACAGGCATAATCCCAAGGCATTTGCTTTTAAGTCTTCACTGAAGGCAAAGCGTCTACAATCTATTGCATCAGAGAAGGATCAACGTCGACTTCATGTGCCTGTAGTTGATCGTTCTACTGGAGAACCAGCTCCTTATGTAATTGTGGTGCAGGGTCCTCCAAAGGTT
GGGAAGTCATTAGTTATAAAATCACTTGTAAAGCATTACACCCAACATAATCTTTCAGACGTCCGAGGTCCAATTACTGTTATATCAGGTAAACAAAGGCGACTGCAGTTTGTGGAGTGTCCAAATGATATGAATTCTATGATTGATGCAGCCAAATTTGCTGATCTTGTTTTGCTTCTCATAGATGGAAGTTATGGTTT
TGAAATGGAAACATTCGAGTTCTTGAATATTCTTCAAGTTCATGGATTTCCCAAAGTTATGGGGGTTCTTACGCATCTAGATAAGTTCAAGGATGTCAAAAAGCTGAGAAAGACTAAGCAACGTCTCAAACATCGTTTTTGGACAGAGATATATGATGGTGCAAAACTGTTCTATTTGTCAGGTCTCATTTATGAAAAGT
ATCTTAAGCGTGAAATACATAATCTGGCAAGATTTATTTCTGTTGCAAAGTTTCGTCCTCTATCTTGGAGAATCTCTCACCCATATATATTGGTAGACCGTTTTGAGGATATTACTCCTCCAGAGAGAGTACAAGAAGATGAAAAATGTGATCGAAATGTCACTCTCTACGGTTACCTGCGAGGTTGCAACCTGAAGAAG
GGAACAAAGGTACATATTGCAGGTGTTGGAGATTGTCATCTTGCTGGCATTGCTAGTTTACCTGATCCATGCCCTTTACCCTCAGCAACCAAAAAGAAGGGATTGCGTGAAAAAGATAAGATGTTTTATGCACCAATGTCAGATTTAGGTGATCTCTTATATGACAAGGATGCTGTTTACATAAACATTGATGATCATAT
GGTCCAGTTCTCCAAACCAGATAATGAAGATGGAGAAGTAGAGACAAAAAAAGGAAAGAATCCTGATGTGGGTGAAGTCCTTGTAAAAACGCTTCAGAATACAAGGTATTCTGTGAATGAAAAATTGGAGCAGAGCTTTATCCAGCTCTTTAGAGGAAAGTCTACTACTAATAGCCAAAATTTGAGAAAGGATACTGATC
TCACTGAACAGGAAGAAAGTGATAGCAATAAAGAAGGGATTAGTGATGAAGAAATAAAAAACAATGATTTGACCACTTCAGATGGTAAAAACAAAATCTTCCAAGATGATCAGGGCATACTGAATCATACTATTTCAGTGAACAGAGTTGATTCACATTCTTATTCTGATAGTTCTCCAGATGAAGATGATACAGGAAGA
AGCAGTGATGAAGAATGTTCCGATTTTGATCATTCAGTGAAGAAAAGGCTAGGAAAAATAATTGATTGTCAAACTTTTACCACGTCCAAGTTAGCAGAGGAGAAAGGTACAAATACATCTGATAGTGAAGAGGAATTGAGGAAGCCTTGTGATTCATTCAATTCAAAAGATTCTCACATTCTAAAAGGTAGTATAAAAGA
AGTATCCGAGTTTCAAAATGGAAGGCTAAGAAGAAGAGCTGTTTTTGAAGATGAGGATGAGAGCAATTTCAAGGATTCTGATGAAATTGATAACGAAGAGGGCACAGAGAGTGAGAATAATAATTCTGAAACCCAAGAAGACAGTGATTCTGATGCTGATGAAGAGGATGATCAGCCTTCTACTTGGAGACAACAGGAGA
AACATCATGGCACAGATAGGTTAGGCAGAACATCTAATTGTAGGGTAGTAGCGGGGGAAGCACTAAATGGATATGAAAGTTTATCAGACGAAGACAAAGAAGGTACAATGGGTGATACTTCAAAATGGAAAGAAAGTTTGATTTCTAGAACAATTTCCAAAAGGAAAATAAATTTGATGCAGCTTGTGTATGGCCATTCT
ACATCAACATCCACTTCAATGTCCTTTCACGACCTGGCGGAAGATAGTGATTGTGATAGTAGTGATGAAGAGGAAGTTTTCAAGCTGAAGCGAAATTCTGAGAAGAAAAAACCTGATGGACATATTGACATTGAAGAACCTAATGCTGATGACTGCACCAAATCCCAAGTAGACTGCTCACAGTTAACTGACTGGTCAAA
TGAAGAGACTATCGAAAGCATTCGTGACCGCTTTGTTACAGGAGACTGGTTAAAGGCTGCTCGCCGAGGTGAACAGATGGAGGGAAGTGAAGAAGATGATGGCTCTGTCTATGGAGATTTTGAAGATTTAGAGACTGGAGAAAAATATAAAGATGGTGATGCCAACATTGGTTCAGAGAGTGGTAAAGGTGACAAGGATT
CTACAGAAGAGGAACGGAGACTAAAGAAGCTTGCACTCCGTGCCAAATTTGAAGCTCAGTATGATGGATCTGAGCCTTTGGATAAGGAAGACGAGGGAGACGAGGACAGTAAGAAGACAAAATATCACACGAGTCAAGTTGGTGAAAGTGACTACATAGATAAGATCAAAGAAGAGATACAGCTTCGGAAGCAGAGGAAT
TTAGCTGTGCTCAATGATGTTGATGAGGTTACACGTCTTGAAATGGAGGGATTTCGTACCGGATCATACTTAAGGTTGGAGGTGCATCGTATGCCATTTGAGATGGTTAAATATTTTAATCCCAGGCATCCTGTCCTGGTCGGAGGAATTGGTAGAGGGGAAGAAAGTGTGGGCTACATGCAGGTTCGACTAAAGAGGCA
TAGATGGCATAGAAAGGTATTGAAGAATCGGGATCCCATAATAATCTCCATTGGTTGGAGGCGTTATCAGACGTTGCCTGTCTATTCACTAGAGGATCGGAATGGACGACATAGAATGCTCAAATACACGCCAGAACACATGCATTGCCTTGCAACATTTTGGGGCCCACTTGCACCTCCAAATACAGGGATAGTTGCTT
TCCAAAACTTATCTAACAATCAGGCATCCTTCCGGATTACTGCAACAGGAGTTGTGTTGGAGTTTAATCACTCTGTCCAGATTGTTAAGAAGCTCAAACTTGTGGGGCATCCCTACAAAATTTTCAAGAAGACGGCCTTTATCAAGGACATGTTCACGTCAGCACTAGAAGTGGCTAGGTTTGAAGGTGCTTCCATCAAA
ACTGTTAGTGGAATACGAGGTCAAGTTAAGAAGGCTGTGAAGACAGGAGAAGGGAAAGAAGGCAGTGCGAGATGTACATTTGAGGACAAAATTCTCCTTAGCGATATCGTTTTCTTACGAGCATGGACTCGAGTTGATATACCTCGCTTCTTTAATCCTGTGGCAACTTCTCTTCAATCTAATGATGAAGTGTGGAAAGG
CATGAAAACCGTGGCTGAACTTAGAAGAGAGCAATGTCTGCCAATTCCTGTAAATAAGGACTCTTTGTACAAACCTATAGAACGAGAACTCAGGCGTTTTAACGTATTAAAGATACCCAAGAAACTACAAGCAGCCCTCCCTTTTGCATCAAAGCCAAAAAATCTTCCACAACGAAAAACTCCTTTACTTGAAAATCGTC
GTGCCGTGGTTATGGAACCTCACGAGCGGAAAGTTCATGCTCTTGTTCAACAATTGCAAGTGATAAGAAATGACAAGGTCAAGAAGCGCAAATTGCAGCATGAAGATAAAAGAAAGACATATGAATTGAAAAAGGATAAAGATGAACAGATCGCTAAGCGGCGTCAACGGGAGGAACGCCGAAAACGCTACAGAGAAGAA
GACAAGCAGAAGAGAGACACGCAGAAGAGAAACACAAGACAAAAAGTCAAATAATGAACTCTCTCTATATACACTGATATTGAAATTCTTTAACAGAAAAGCTGGTAAATAACGGGCCTTCATATATTTCACTGCCGTATCTGTGGATTGGATTACTGCAGTATCATACTTGTTCTTGAGTCAACGCGAATAGATTTATG
GGTTTATAAGCAATTTAAGCGCACCGGTAGCTAGCTTCATTGTAATGAAACTTTCTGGCTTAACATTTCCTTCGTAACAAATAGAGGTTTGTTTATTATCTGGGCTTATTAAGTACTTGCAAAAAGTAATTCTATAATATCCAGCACATACAAAGTACTTATATACACCACATGCACCTAAATACAAGGAAGTAATTATA
TAAAATCCAGATCTGAATAATTTAATCG
>TRINITY_DN110272_c0_g1_i4 from sample A4 / Example unspliced isoform:GTGAAAGTGACTACATAGATAAGgtgattagctgatctttcttatctacttagagtttgatgtggcagtgcataattgcaaatagatgtgtttaatctttatataaggcttctgatttctgttgatttaatgaattggctttgtagATCAAAGAAGAGATACAGCTTCGGAAGCAGAGGAATTTAGCTGTGCTCAATGAT
GTTGATGAGGTTACACGTCTTGAAATGGAGGGATTTCGTACCGGATCATACTTAAGGTTGGAGGTGCATCGTATGCCATTTGAGATGGTTAAATATTTTAATCCCAGGCATCCTGTCCTGGTCGGAGGAATTGGTAGAGGGGAAGAAAGTGTGGGCTACATGCAGGTTCGACTAAAGAGGCATAGATGGCATAGAAAGGT
ATTGAAGAATCGGGATCCCATAATAATCTCCATTGGTTGGAGGCGTTATCAGACGTTGCCTGTCTATTCACTAGAGGATCGGAATGGACGACATAGAATGCTCAAATACACGCCAGAACACATGCATTGCCTTGCAACATTTTGGGGCCCACTTGCACCTCCAAATACAGGGATAGTTGCTTTCCAAAACTTATCTAACA
ATCAGGCATCCTTCCGGATTACTGCAACAGGAGTTGTGTTGGAGTTTAATCACTCTGTCCAGATTGTTAAGAAGCTCAAACTTGTGGGGCATCCCTACAAAATTTTCAAGAAGACGGCCTTTATCAAGGACATGTTCACGTCAGCACTAGAAGTGGCTAGGTTTGAAGGTGCTTCCATCAAAACTGTTAGTGGAATACGA
GGTCAAGTTAAGAAGGCTGTGAAGACAGGAGAAGGGAAAGAAGGCAGTGCGAGATGTACATTTGAGGACAAAATTCTCCTTAGCGATATCGTTTTCTTACGAGCATGGACTCGAGTTGATATACCTCGCTTCTTTAATCCTGTGGCAACTTCTCTTCAATCTAATGATGAAGTGTGGAAAGGCATGAAAACCGTGGCTGA
ACTTAGAAGAGAGCAATGTCTGCCAATTCCTGTAAATAAGGACTCTTTGTACAAACCTATAGAACGAGAACTCAGGCGTTTTAACGTATTAAAGATACCCAAGAAACTACAAGCAGCCCTCCCTTTTGCATCAAAGCCAAAAAATCTTCCACAACGAAAAACTCCTTTACTTGAAAATCGTCGTGCCGTGGTTATGGAAC
CTCACGAGCGGAAAGTTCATGCTCTTGTTCAACAATTGCAAGTGATAAGAAATGACAAGGTCAAGAAGCGCAAATTGCAGCATGAAGATAAAAGAAAGACATATGAATTGAAAAAGGATAAAGATGAACAGATCGCTAAGCGGCGTCAACGGGAGGAACGCCGAAAACGCTACAGAGAAGAAGACAAGCAGAAGAGAGAC
ACGCAGAAGAGAAACACAAGACAAAAAGTCAAATAATGAACTCTCTCTATATACACTGATATTGAAATTCTTTAACAGAAAAGCTGGTAAATAACGGGCCTTCATATATTTCACTGCCGTATCTGTGGATTGGATTACTGCAGTATCATACTTGTTCTTGAGTCAACGCGAATAGATTTATGGGTTTATAAGCAATTTAA
GCGCACCGGTAGCTAGCTTCATTGTAATGAAACTTTCTGGCTTAACATTTCCTTCGTAACAAATAGAGGTTTGTTTATTATCTGGGCTTATTAAGTACTTGCAAAAAGTAATTCTATAATATCCAGCACATACAAAGTACTTATATACACCACATGCACCTAAATACAAGGAAGTAATTATATAAAATCCAGATCTGAAT
AATTTAATCG
Intron 2 GTTGGTTAGT ... TTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.65 | 136 | 42.3 | 44.5 |
| A2 | 26.63 | 135 | 44.8 | 49 |
| A3 | 23.44 | 147 | 39 | 45 |
| A4 | 14.43 | 83 | 28.8 | 14 |
| A5 | 30 | 49 | 9 | 21 |
| A6 | 26.47 | 25 | 3 | 9 |
| A7 | 21.32 | 214 | 52.8 | 58 |
| A8 | 22.22 | 154 | 38.5 | 44 |
| A9 | 25.55 | 169 | 27.8 | 58 |
| A10 | 20.98 | 177 | 36 | 47 |
>TRINITY_DN133112_c0_g2_i6 from sample A1 / Example spliced isoformATACAACTTACCAAATGCCATAGTTCTGTTGTTATACACTTCCACTCCACTCTCGCTAGGAACAACCCACATTACTCTGGCCCTCTCTGTTCGGGCAGTGTAACAGTAAAGCTCGACTCTTTCCTGCTACCACGCTTTTACTACGCAAGATTCTTACAGGCTTCATCACCCGCCATAAACCATCTTATGCCATTAGTTAT
TTTTTCATCGTTTACAAGCTAGGTCGTTGTAAGGTTTTATCAGCCGAAAGCTTTGGAAAATCAAACATATTTTGATTTTCCACCGGGTGTTGGAAGTGATTTCTTTTCCGTTCAAATCCGGTTTTCTGAAATCCACATGACGAGCGGAGGCCGAAGACAGTTTGCACAGCAGCTTTAGACTCTATACTTACTGTAGAAGT
TTCATAGCAAGACATCTCAACGATGGAAGAAATTTGCTATTAACGAGGATTTTAAATTTATTTTCACTGAGAAATTCAAAGATTATATAGGAGCAATGGAGCAATCTCATAAGGCCCATAGAGCCCGTCAGTCTGGACCATCTTCGAAGAAAAAAGAGATAACAGACAAAAAGAAGCGTGGACTGTCTGGTGACAGGCAT
AATCCCAAGGCATTTGCTTTTAAGTCTTCACTGAAGGCAAAGCGTCTACAATCTATTGCATCAGAGAAGGATCAACGTCGACTTCATGTGCCTGTAGTTGATCGTTCTACTGGAGAACCAGCTCCCTATGTAATTGTGGTGCAGGGTCCTCCAAAGGTTGGGAAGTCATTAGTTATAAAATCACTTGTAAAGCATTACAC
CCAACATAATCTTTCAGACGTCCGAGGTCCAATTACTGTTATATCAGGTAAACAAAGGCGACTGCAGTTTGTGGAGTGTCCAAATGATATGAATTCTATGATTGATGCAGCCAAATTTGCTGATCTTGTTTTGCTTCTCATAGATGGAAGTTATGGTTTTGAAATGGAAACATTCGAGTTCTTGAATATTCTTCAAGTTC
ATGGATTTCCCAAAGTTATGGGGGTTCTTACGCATCTAGATAAGTTCAAGGATGTCAAAAAGCTGAGAAAGACTAAGCAACGTCTCAAACATCGTTTTTGGACAGAGATATATGATGGTGCAAAACTGTTCTATTTGTCAGGTCTCATTTATGAAAAGTATCTTAAGCGTGAAATACATAATCTGGCAAGATTTATTTCT
GTTGCAAAGTTTCGTCCTCTATCTTGGAGAATCTCTCACCCATATATATTGGTAGACCGTTTTGAGGATATTACTCCTCCAGAGAGAGTACAAGAAGACGAAAAATGTGATCGAAATGTCACTCTCTACGGTTACCTGCGAGGTTGCAACCTGAAGAAGGGAACAAAGGTACATATTGCAGGTGTTGGAGATTGTCATCT
TGCTGGCATTGCTAGTTTACCTGATCCATGCCCTTTACCCTCAGCAACCAAAAAGAAGGGATTGCGTGAAAAAGATAAGATGTTTTATGCACCAATGTCAGATTTAGGTGATCTCTTATATGACAAGGATGCTGTTTACATAAACATTGATGATCATATGGTTCAGTTCTCCAAACCAGATAATGAAGATGGAGAAGTAG
AGACAAAAAAAGGAAAGAATCCTGATGTGGGTGAAGTCCTTGTAAAAACGCTTCAGAATACAAGGTATTCTGTTAATGAAAAATTGGAGCAGAGCTTTATCCAGCTCTTTAGAGGAAAGTCTACTACTAATAGCCAAAATTTGAGAAAGGATACTGATCTCACTGAACAGGAAGAAAGTGATAGCAATAAAGAAGGGATT
AGTGATGAAGAAATAAAAAACAATGATTTGACCACTTCAGATGGTAAAAACAAAATCTTCCAAGATGATCAGGGCATATTGAATCATACTATTTCAGTGAACAGAGTTGATTCACATTCTTATTCTGATAGTTCTCCAGATGAAGATGATACAGGAAGAAGCAGTGATGAAGAATGTTCCGATTTTGATCATTCAGTGAA
GAAAAGGCTAGGAAAAATAATTGATTGTCAAACTTTTACCACGTCCAAGTTAGCAGAGGAGAAAGGTACAAATACATCTGATAGTGAAGAGGAATTGAGGAAGCCTTGTGATTCATTCAATTCAAAAGATTCTCACATTCTAAAAGGTAGTATAAAAGAAGTATCCGAGTTTCAAAATGGAAGGCTAAGAAGAAGAGCTG
TTTTTGAAGATGAGGATGAGAGCAATTTCAAGGATTCTGATGAAATTGATAACGAAGAGGGCACAGAGAGTGAGAATAATAATTCTGAAACCCAAGAAGACAGTGATTCTGATGCTGATGAAGAGGATGATCAGCCTTCTACTTGGAGACAACAGGAGAAACATCATGGCACAGATAGGTTAGGCAGAACATCTAATTGT
AGGGTAGTAGCGGGGGAAGCACTAAATGGATATGAAAGTTTATCAGACGAAGACAAAGAAGGTACAATGGGTGATACTTCAAAATGGAAAGAAAGTTTGATTTCTAGAACAATTTCCAAAAGGAAAATAAATTTGATGCAGCTTGTGTATGGCCATTCTACATCAACATCCACTTCAATGTCCTTTCACGACCTGGCGGA
AGATAGTGATTGTGATAGTAGTGATGAAGAGGAAGTTTTCAAGCTGAAGCGAAATTCTGAGAAGAAAAAACCTGATGGACATATTGACATTGAAGAACCTAATGCTGATGACTGCACCAAATCCCAAGTAGACTGCTCACAGTTAACTGACTGGTCAAATGAAGAGACTATCGAAAGCATTCGTGACCGCTTTGTTACAG
GAGACTGGTTAAAGGCTGCTCGCCGAGGTGAACAGATGGAGGGAAGTGAAGAAGATGATGGCTCTGTCTATGGAGATTTTGAAGATTTAGAGACTGGAGAAAAATATAAAGATGGTGATGCCAACATTGGTTCAGAGAGTGGTAAAGGTGACAAGGATTCTACAGAAGAGGAACGGAGACTAAAGAAGCTTGCACTCCGT
GCCAAATTTGAAGCTCAGTATGATGGATCTGAGCCTTTGGATAAGGAAGACGAGGGAGACGAGGACAGTAAGAAGACAAAATATCACACGAGTCAAGTTGGTGAAAGTGACTACATAGATAAGATCAAAGAAGAGATACAGCTTCGGAAGCAGAGGAATTTAGCTGTGCTCAATGATGTTGATGAGGTTACACGTCTTGA
AATGGAGGGATTTCGTACCGGATCATACTTAAGGTTGGAGGTGCATCGTATGCCATTTGAGATGGTTAAATATTTTAATCCCAGGCATCCTGTCCTGGTCGGAGGAATTGGTAGAGGGGAAGAAAGTGTGGGCTACATGCAGGTTCGACTAAAGAGGCATAGATGGCATAGAAAGGTATTGAAGAATCGGGATCCCATAA
TAATCTCCATTGGTTGGAGGCGTTATCAGACGTTGCCTGTCTATTCACTAGAGGATCGGAATGGACGACATAGAATGCTCAAATACACGCCAGAACACATGCATTGCCTTGCAACATTTTGGGGCCCACTTGCACCTCCAAATACAGGGATAGTTGCTTTCCAAAACTTATCTAACAATCAGGCATCCTTTCGGATTACT
GCAACAGGAGTTGTGTTGGAGTTTAATCACTCTGTCCAGATTGTTAAGAAGCTCAAACTTGTGGGGCATCCCTACAAAATTTTCAAGAAGACGGCCTTTATCAAGGACATGTTCACGTCAGCACTAGAAGTGGCTAGGTTTGAAGGTGCTTCCATCAAAACTGTTAGTGGAATACGAGGTCAAGTTAAGAAGGCTGTGAA
GACAGGAGAAGGGAAAGAAGGCAGTGCGAGATGTACATTTGAGGACAAAATTCTCCTTAGCGATATCGTTTTCTTACGAGCATGGACTCGAGTTGATATACCTCGCTTCTTTAATCCTGTGGCAACTTCTCTTCAATCTAATGATGAAGTGTGGAAAGGCATGAAAACCGTGGCTGAACTTAGAAGAGAGCAATGTCTGC
CAATTCCTGTAAATAAGGACTCTTTGTACAAACCTATAGAACGAGAACTCAGGCGTTTTAACGTATTAAAGATACCCAAGAAACTACAAGCAGCCCTCCCTTTTGCATCAAAGCCAAAAAATCTTCCACAACGAAAAACTCCTTTACTTGAAAATCGTCGTGCCGTGGTTATGGAACCTCACGAGCGGAAAGTTCATGCT
CTTGTTCAACAATTGCAAGTGATAAGAAATGACAAGGTCAAGAAGCGCAAATTGCAGCATGAAGATAAAAGAAAGACATATGAATTGAAAAAGGATAAAGATGAACAGATCGCTAAGCGGCGTCAACGGGAGGAACGCCGAAAACGCTACAGAGAAGAAGACAAGCAGAAGAGAGACACGCAGAAGAGAAACACAAGACA
AAAAGTCAAATAATGAACTCTCTCTATATACACTGATATTGAAATTCTTTAACAGAAAAGCTGGTAAATAACGGGCCTTCATATATTTCACTGCCGTATCTGTGGATTGGATTACTGCAGTATCATACTTGTTCTTGAGTCAACGCGAATAGATTTATGGGTTTATAAGCAATTTAAGCGCACCGGTAGCTAGCTTCATT
GTAATGAAACTTTCTGGCTTAACATTTCCTTCGTAACAAATAGAGGTTTGTTTATTAAAAA
>TRINITY_DN133112_c0_g2_i2 from sample A1 / Example unspliced isoform:ATACAACTTACCAAATGCCATAGTTCTGTTGTTATACACTTCCACTCCACTCTCGCTAGGAACAACCCACATTACTCTGGCCCTCTCTGTTCGGGCAGTGTAACAGTAAAGCTCGACTCTTTCCTGCTACCACGCTTTTACTACGCAAGATTCTTACAGGCTTCATCACCCGCCATAAACCATCTTATGCCATTAGTTAT
TTTTTCATCGTTTACAAGCTAGGTCGTTGTAAGGTTTTATCAGCCGAAAGCTTTGGAAAATCAAACATATTTTGATTTTCCACCGGGTGTTGGAAGTGATTTCTTTTCCGTTCAAATCCGGTTTTCTGAAATCCACATGACGAGCGGAGGCCGAAGACAGTTTGCACAGCAGCTTTAGACTCTATACTTACTGTAGAAGT
TTCATAGCAAGACATCTCAACGATGGAAGAAATTTGCTATTAACGAGGATTTTAAATTTATTTTCACTGAGAAATTCAAAGATTATATAGGAGCAATGGAGCAATCTCATAAGGCCCATAGAGCCCGTCAGTCTGGACCATCTTCGAAGAAAAAAGAGATAACAGACAAAAAGAAGCGTGGACTGTCTGGTGACAGGCAT
AATCCCAAGGCATTTGCTTTTAAGTCTTCACTGAAGGCAAAGCGTCTACAATCTATTGCATCAGAGAAGGATCAACGTCGACTTCATGTGCCTGTAGTTGATCGTTCTACTGGAGAACCAGCTCCCTATGTAATTGTGGTGCAGGGTCCTCCAAAGGTTGGGAAGTCATTAGTTATAAAATCACTTGTAAAGCATTACAC
CCAACATAATCTTTCAGACGTCCGAGGTCCAATTACTGTTATATCAGGTAAACAAAGGCGACTGCAGTTTGTGGAGTGTCCAAATGATATGAATTCTATGATTGATGCAGCCAAATTTGCTGATCTTGTTTTGCTTCTCATAGATGGAAGTTATGGTTTTGAAATGGAAACATTCGAGTTCTTGAATATTCTTCAAGTTC
ATGGATTTCCCAAAGTTATGGGGGTTCTTACGCATCTAGATAAGTTCAAGGATGTCAAAAAGCTGAGAAAGACTAAGCAACGTCTCAAACATCGTTTTTGGACAGAGATATATGATGGTGCAAAACTGTTCTATTTGTCAGGTCTCATTTATGAAAAGTATCTTAAGCGTGAAATACATAATCTGGCAAGATTTATTTCT
GTTGCAAAGTTTCGTCCTCTATCTTGGAGAATCTCTCACCCATATATATTGGTAGACCGTTTTGAGGATATTACTCCTCCAGAGAGAGTACAAGAAGACGAAAAATGTGATCGAAATGTCACTCTCTACGGTTACCTGCGAGGTTGCAACCTGAAGAAGGGAACAAAGGTACATATTGCAGGTGTTGGAGATTGTCATCT
TGCTGGCATTGCTAGTTTACCTGATCCATGCCCTTTACCCTCAGCAACCAAAAAGAAGGGATTGCGTGAAAAAGATAAGATGTTTTATGCACCAATGTCAGATTTAGGTGATCTCTTATATGACAAGGATGCTGTTTACATAAACATTGATGATCATATGGTTCAGTTCTCCAAACCAGATAATGAAGATGGAGAAGTAG
AGACAAAAAAAGGAAAGAATCCTGATGTGGGTGAAGTCCTTGTAAAAACGCTTCAGAATACAAGGTATTCTGTTAATGAAAAATTGGAGCAGAGCTTTATCCAGCTCTTTAGAGGAAAGTCTACTACTAATAGCCAAAATTTGAGAAAGGATACTGATCTCACTGAACAGGAAGAAAGTGATAGCAATAAAGAAGGGATT
AGTGATGAAGAAATAAAAAACAATGATTTGACCACTTCAGATGGTAAAAACAAAATCTTCCAAGATGATCAGGGCATATTGAATCATACTATTTCAGTGAACAGAGTTGATTCACATTCTTATTCTGATAGTTCTCCAGATGAAGATGATACAGGAAGAAGCAGTGATGAAGAATGTTCCGATTTTGATCATTCAGTGAA
GAAAAGGCTAGGAAAAATAATTGATTGTCAAACTTTTACCACGTCCAAGTTAGCAGAGGAGAAAGGTACAAATACATCTGATAGTGAAGAGGAATTGAGGAAGCCTTGTGATTCATTCAATTCAAAAGATTCTCACATTCTAAAAGGTAGTATAAAAGAAGTATCCGAGTTTCAAAATGGAAGGCTAAGAAGAAGAGCTG
TTTTTGAAGATGAGGATGAGAGCAATTTCAAGGATTCTGATGAAATTGATAACGAAGAGGGCACAGAGAGTGAGAATAATAATTCTGAAACCCAAGAAGACAGTGATTCTGATGCTGATGAAGAGGATGATCAGCCTTCTACTTGGAGACAACAGGAGAAACATCATGGCACAGATAGGTTAGGCAGAACATCTAATTGT
AGGGTAGTAGCGGGGGAAGCACTAAATGGATATGAAAGTTTATCAGACGAAGACAAAGAAGGTACAATGGGTGATACTTCAAAATGGAAAGAAAGTTTGATTTCTAGAACAATTTCCAAAAGGAAAATAAATTTGATGCAGCTTGTGTATGGCCATTCTACATCAACATCCACTTCAATGTCCTTTCACGACCTGGCGGA
AGATAGTGATTGTGATAGTAGTGATGAAGAGGAAGTTTTCAAGCTGAAGCGAAATTCTGAGAAGAAAAAACCTGATGGACATATTGACATTGAAGAACCTAATGCTGATGACTGCACCAAATCCCAAGTAGACTGCTCACAGTTAACTGACTGGTCAAATGAAGAGACTATCGAAAGCATTCGTGACCGCTTTGTTACAG
GAGACTGGTTAAAGGCTGCTCGCCGAGGTGAACAGATGGAGGGAAGTGAAGAAGATGATGGCTCTGTCTATGGAGATTTTGAAGATTTAGAGACTGGAGAAAAATATAAAGATGGTGATGCCAACATTGGTTCAGAGAGTGGTAAAGGTGACAAGGATTCTACAGAAGAGGAACGGAGACTAAAGAAGCTTGCACTCCGT
GCCAAATTTGAAGCTCAGTATGATGGATCTGAGCCTTTGGATAAGGAAGACGAGGGAGACGAGGACAGTAAGAAGACAAAATATCACACGAGTCAAGTTGGTGAAAGTGACTACATAGATAAGATCAAAGAAGAGATACAGCTTCGGAAGCAGAGGAATTTAGCTGTGCTCAATGATGTTGATGAGGTTACACGTCTTGA
AATGGAGGGATTTCGTACCGGATCATACTTAAGGTTGGAGGTGCATCGTATGCCATTTGAGATGGTTAAATATTTTAATCCCAGGCATCCTGTCCTGGTCGGAGGAATTGGTAGAGGGGAAGAAAGTGTGGGCTACATGCAGgttggttagtctgtcgactagaacctatataattttgttgtatgatattctgcttaaa
cctaagaatattcaaggcacttgctgctaacattctttattttcagGTTCGACTAAAGAGGCATAGATGGCATAGAAAGGTATTGAAGAATCGGGATCCCATAATAATCTCCATTGGTTGGAGGCGTTATCAGACGTTGCCTGTCTATTCACTAGAGGATCGGAATGGACGACATAGAATGCTCAAATACACGCCAGAAC
ACATGCATTGCCTTGCAACATTTTGGGGCCCACTTGCACCTCCAAATACAGGGATAGTTGCTTTCCAAAACTTATCTAACAATCAGGCATCCTTTCGGATTACTGCAACAGGAGTTGTGTTGGAGTTTAATCACTCTGTCCAGATTGTTAAGAAGCTCAAACTTGTGGGGCATCCCTACAAAATTTTCAAGAAGACGGCC
TTTATCAAGGACATGTTCACGTCAGCACTAGAAGTGGCTAGGTTTGAAGGTGCTTCCATCAAAACTGTTAGTGGAATACGAGGTCAAGTTAAGAAGGCTGTGAAGACAGGAGAAGGGAAAGAAGGCAGTGCGAGATGTACATTTGAGGACAAAATTCTCCTTAGCGATATCGTTTTCTTACGAGCATGGACTCGAGTTGA
TATACCTCGCTTCTTTAATCCTGTGGCAACTTCTCTTCAATCTAATGATGAAGTGTGGAAAGGCATGAAAACCGTGGCTGAACTTAGAAGAGAGCAATGTCTGCCAATTCCTGTAAATAAGGACTCTTTGTACAAACCTATAGAACGAGAACTCAGGCGTTTTAACGTATTAAAGATACCCAAGAAACTACAAGCAGCCC
TCCCTTTTGCATCAAAGCCAAAAAATCTTCCACAACGAAAAACTCCTTTACTTGAAAATCGTCGTGCCGTGGTTATGGAACCTCACGAGCGGAAAGTTCATGCTCTTGTTCAACAATTGCAAGTGATAAGAAATGACAAGGTCAAGAAGCGCAAATTGCAGCATGAAGATAAAAGAAAGACATATGAATTGAAAAAGGAT
AAAGATGAACAGATCGCTAAGCGGCGTCAACGGGAGGAACGCCGAAAACGCTACAGAGAAGAAGACAAGCAGAAGAGAGACACGCAGAAGAGAAACACAAGACAAAAAGTCAAATAATGAACTCTCTCTATATACACTGATATTGAAATTCTTTAACAGAAAAGCTGGTAAATAACGGGCCTTCATATATTTCACTGCCG
TATCTGTGGATTGGATTACTGCAGTATCATACTTGTTCTTGAGTCAACGCGAATAGATTTATGGGTTTATAAGCAATTTAAGCGCACCGGTAGCTAGCTTCATTGTAATGAAACTTTCTGGCTTAACATTTCCTTCGTAACAAATAGAGGTTTGTTTATTAAAAA
Intron 3 GTATTCTGAT ... TGCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.92 | 59 | 0 | 24 |
| A2 | 19.67 | 49 | 0 | 12 |
| A3 | 21.74 | 72 | 0 | 20 |
| A4 | 24.74 | 73 | 0 | 24 |
| A5 | 7.14 | 13 | 0 | 1 |
| A6 | 50 | 1 | 0 | 1 |
| A7 | 11.54 | 23 | 0 | 3 |
| A8 | 25 | 3 | 0 | 1 |
| A9 | 0 | 11 | 0 | 0 |
| A10 | 18.75 | 13 | 0 | 3 |
>TRINITY_DN133112_c0_g2_i2 from sample A1 / Example spliced isoformATACAACTTACCAAATGCCATAGTTCTGTTGTTATACACTTCCACTCCACTCTCGCTAGGAACAACCCACATTACTCTGGCCCTCTCTGTTCGGGCAGTGTAACAGTAAAGCTCGACTCTTTCCTGCTACCACGCTTTTACTACGCAAGATTCTTACAGGCTTCATCACCCGCCATAAACCATCTTATGCCATTAGTTAT
TTTTTCATCGTTTACAAGCTAGGTCGTTGTAAGGTTTTATCAGCCGAAAGCTTTGGAAAATCAAACATATTTTGATTTTCCACCGGGTGTTGGAAGTGATTTCTTTTCCGTTCAAATCCGGTTTTCTGAAATCCACATGACGAGCGGAGGCCGAAGACAGTTTGCACAGCAGCTTTAGACTCTATACTTACTGTAGAAGT
TTCATAGCAAGACATCTCAACGATGGAAGAAATTTGCTATTAACGAGGATTTTAAATTTATTTTCACTGAGAAATTCAAAGATTATATAGGAGCAATGGAGCAATCTCATAAGGCCCATAGAGCCCGTCAGTCTGGACCATCTTCGAAGAAAAAAGAGATAACAGACAAAAAGAAGCGTGGACTGTCTGGTGACAGGCAT
AATCCCAAGGCATTTGCTTTTAAGTCTTCACTGAAGGCAAAGCGTCTACAATCTATTGCATCAGAGAAGGATCAACGTCGACTTCATGTGCCTGTAGTTGATCGTTCTACTGGAGAACCAGCTCCCTATGTAATTGTGGTGCAGGGTCCTCCAAAGGTTGGGAAGTCATTAGTTATAAAATCACTTGTAAAGCATTACAC
CCAACATAATCTTTCAGACGTCCGAGGTCCAATTACTGTTATATCAGGTAAACAAAGGCGACTGCAGTTTGTGGAGTGTCCAAATGATATGAATTCTATGATTGATGCAGCCAAATTTGCTGATCTTGTTTTGCTTCTCATAGATGGAAGTTATGGTTTTGAAATGGAAACATTCGAGTTCTTGAATATTCTTCAAGTTC
ATGGATTTCCCAAAGTTATGGGGGTTCTTACGCATCTAGATAAGTTCAAGGATGTCAAAAAGCTGAGAAAGACTAAGCAACGTCTCAAACATCGTTTTTGGACAGAGATATATGATGGTGCAAAACTGTTCTATTTGTCAGGTCTCATTTATGAAAAGTATCTTAAGCGTGAAATACATAATCTGGCAAGATTTATTTCT
GTTGCAAAGTTTCGTCCTCTATCTTGGAGAATCTCTCACCCATATATATTGGTAGACCGTTTTGAGGATATTACTCCTCCAGAGAGAGTACAAGAAGACGAAAAATGTGATCGAAATGTCACTCTCTACGGTTACCTGCGAGGTTGCAACCTGAAGAAGGGAACAAAGGTACATATTGCAGGTGTTGGAGATTGTCATCT
TGCTGGCATTGCTAGTTTACCTGATCCATGCCCTTTACCCTCAGCAACCAAAAAGAAGGGATTGCGTGAAAAAGATAAGATGTTTTATGCACCAATGTCAGATTTAGGTGATCTCTTATATGACAAGGATGCTGTTTACATAAACATTGATGATCATATGGTTCAGTTCTCCAAACCAGATAATGAAGATGGAGAAGTAG
AGACAAAAAAAGGAAAGAATCCTGATGTGGGTGAAGTCCTTGTAAAAACGCTTCAGAATACAAGGTATTCTGTTAATGAAAAATTGGAGCAGAGCTTTATCCAGCTCTTTAGAGGAAAGTCTACTACTAATAGCCAAAATTTGAGAAAGGATACTGATCTCACTGAACAGGAAGAAAGTGATAGCAATAAAGAAGGGATT
AGTGATGAAGAAATAAAAAACAATGATTTGACCACTTCAGATGGTAAAAACAAAATCTTCCAAGATGATCAGGGCATATTGAATCATACTATTTCAGTGAACAGAGTTGATTCACATTCTTATTCTGATAGTTCTCCAGATGAAGATGATACAGGAAGAAGCAGTGATGAAGAATGTTCCGATTTTGATCATTCAGTGAA
GAAAAGGCTAGGAAAAATAATTGATTGTCAAACTTTTACCACGTCCAAGTTAGCAGAGGAGAAAGGTACAAATACATCTGATAGTGAAGAGGAATTGAGGAAGCCTTGTGATTCATTCAATTCAAAAGATTCTCACATTCTAAAAGGTAGTATAAAAGAAGTATCCGAGTTTCAAAATGGAAGGCTAAGAAGAAGAGCTG
TTTTTGAAGATGAGGATGAGAGCAATTTCAAGGATTCTGATGAAATTGATAACGAAGAGGGCACAGAGAGTGAGAATAATAATTCTGAAACCCAAGAAGACAGTGATTCTGATGCTGATGAAGAGGATGATCAGCCTTCTACTTGGAGACAACAGGAGAAACATCATGGCACAGATAGGTTAGGCAGAACATCTAATTGT
AGGGTAGTAGCGGGGGAAGCACTAAATGGATATGAAAGTTTATCAGACGAAGACAAAGAAGGTACAATGGGTGATACTTCAAAATGGAAAGAAAGTTTGATTTCTAGAACAATTTCCAAAAGGAAAATAAATTTGATGCAGCTTGTGTATGGCCATTCTACATCAACATCCACTTCAATGTCCTTTCACGACCTGGCGGA
AGATAGTGATTGTGATAGTAGTGATGAAGAGGAAGTTTTCAAGCTGAAGCGAAATTCTGAGAAGAAAAAACCTGATGGACATATTGACATTGAAGAACCTAATGCTGATGACTGCACCAAATCCCAAGTAGACTGCTCACAGTTAACTGACTGGTCAAATGAAGAGACTATCGAAAGCATTCGTGACCGCTTTGTTACAG
GAGACTGGTTAAAGGCTGCTCGCCGAGGTGAACAGATGGAGGGAAGTGAAGAAGATGATGGCTCTGTCTATGGAGATTTTGAAGATTTAGAGACTGGAGAAAAATATAAAGATGGTGATGCCAACATTGGTTCAGAGAGTGGTAAAGGTGACAAGGATTCTACAGAAGAGGAACGGAGACTAAAGAAGCTTGCACTCCGT
GCCAAATTTGAAGCTCAGTATGATGGATCTGAGCCTTTGGATAAGGAAGACGAGGGAGACGAGGACAGTAAGAAGACAAAATATCACACGAGTCAAGTTGGTGAAAGTGACTACATAGATAAGATCAAAGAAGAGATACAGCTTCGGAAGCAGAGGAATTTAGCTGTGCTCAATGATGTTGATGAGGTTACACGTCTTGA
AATGGAGGGATTTCGTACCGGATCATACTTAAGGTTGGAGGTGCATCGTATGCCATTTGAGATGGTTAAATATTTTAATCCCAGGCATCCTGTCCTGGTCGGAGGAATTGGTAGAGGGGAAGAAAGTGTGGGCTACATGCAGGTTGGTTAGTCTGTCGACTAGAACCTATATAATTTTGTTGTATGATATTCTGCTTAAA
CCTAAGAATATTCAAGGCACTTGCTGCTAACATTCTTTATTTTCAGGTTCGACTAAAGAGGCATAGATGGCATAGAAAGGTATTGAAGAATCGGGATCCCATAATAATCTCCATTGGTTGGAGGCGTTATCAGACGTTGCCTGTCTATTCACTAGAGGATCGGAATGGACGACATAGAATGCTCAAATACACGCCAGAAC
ACATGCATTGCCTTGCAACATTTTGGGGCCCACTTGCACCTCCAAATACAGGGATAGTTGCTTTCCAAAACTTATCTAACAATCAGGCATCCTTTCGGATTACTGCAACAGGAGTTGTGTTGGAGTTTAATCACTCTGTCCAGATTGTTAAGAAGCTCAAACTTGTGGGGCATCCCTACAAAATTTTCAAGAAGACGGCC
TTTATCAAGGACATGTTCACGTCAGCACTAGAAGTGGCTAGGTTTGAAGGTGCTTCCATCAAAACTGTTAGTGGAATACGAGGTCAAGTTAAGAAGGCTGTGAAGACAGGAGAAGGGAAAGAAGGCAGTGCGAGATGTACATTTGAGGACAAAATTCTCCTTAGCGATATCGTTTTCTTACGAGCATGGACTCGAGTTGA
TATACCTCGCTTCTTTAATCCTGTGGCAACTTCTCTTCAATCTAATGATGAAGTGTGGAAAGGCATGAAAACCGTGGCTGAACTTAGAAGAGAGCAATGTCTGCCAATTCCTGTAAATAAGGACTCTTTGTACAAACCTATAGAACGAGAACTCAGGCGTTTTAACGTATTAAAGATACCCAAGAAACTACAAGCAGCCC
TCCCTTTTGCATCAAAGCCAAAAAATCTTCCACAACGAAAAACTCCTTTACTTGAAAATCGTCGTGCCGTGGTTATGGAACCTCACGAGCGGAAAGTTCATGCTCTTGTTCAACAATTGCAAGTGATAAGAAATGACAAGGTCAAGAAGCGCAAATTGCAGCATGAAGATAAAAGAAAGACATATGAATTGAAAAAGGAT
AAAGATGAACAGATCGCTAAGCGGCGTCAACGGGAGGAACGCCGAAAACGCTACAGAGAAGAAGACAAGCAGAAGAGAGACACGCAGAAGAGAAACACAAGACAAAAAGTCAAATAATGAACTCTCTCTATATACACTGATATTGAAATTCTTTAACAGAAAAGCTGGTAAATAACGGGCCTTCATATATTTCACTGCCG
TATCTGTGGATTGGATTACTGCAGTATCATACTTGTTCTTGAGTCAACGCGAATAGATTTATGGGTTTATAAGCAATTTAAGCGCACCGGTAGCTAGCTTCATTGTAATGAAACTTTCTGGCTTAACATTTCCTTCGTAACAAATAGAGGTTTGTTTATTAAAAA
>TRINITY_DN133112_c0_g2_i5 from sample A1 / Example unspliced isoform:GTGGTGCAGGGTCCTCCAAAGgtattctgattaagattcaattaagcaacttcaatttagttgacatgattttctaacattgtaaactttggctttctacgtattgagatggaccatttttttgcaatgcagGTTGGGAAGTCATTAGTTATAAAATCACTTGTAAAGCATTACACCCAACATAATCTTTCAGACGTCCG
AGGTCCAATTACTGTTATATCAGGTAAACAAAGGCGACTGCAGTTTGTGGAGTGTCCAAATGATATGAATTCTATGATTGATGCAGCCAAATTTGCTGATCTTGTTTTGCTTCTCATAGATGGAAGTTATGGTTTTGAAATGGTGAGTCCTAAAAACTGTAGCAATGCTTGAAAACAAGTTTCTTACGTCTATTCTCATT
AAATTGTTGCTATTTTCTCTTTGCTTCAGTATATAACCTTAAGCTGGCACTGCATGTTTAAATCTGTATTTTATAAGAGCAGACGTACAGCATATTTTTTTCTGGAACTGAGCATCTCATTTTGTGGAAGATTTTCCACTTGATTGGAATCCGTCTGAACTCAAACTAATCATTAGCCTAGCAACTTTTTAGTTGATCAA
AATTATTTTGTGCTTTGGAATTACACCACCAATTGGCATAATGGATGCTAATTAGTCTTTCAACCATATTAACACATTTGAATTATGTGAAACTATCGTTTGCTATACCTAGAAACCAATGAAGTCTGCCAACTGTTTCAAGTAATCAAAATCTATTTTCAAAATATTAGGAAATAGGAAAATAATCTCTCTCTCTATAC
ACGACACAGACACACACACACGCACGCATATTCAAACAGACAAACACACACACATTTATACCTGTGGCAACTGTTTTGCTCTCTCTATTTACTTTTTTCTTTTTCCTTTGAAATAACTCCTTGTTCAACTCCGGGGTACTTTCCTCCATTCCGAGGATGG