NA ----> NA

Intron 1 GTGACTGTAA ... CTTCCTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.63	11	43	43
A2	77.5	9	35	27
A3	74.6	8	20	27
A4	79.31	3	10	13
A5	76.47	2	7	6
A6	61.29	6	7	12
A7	63.48	21	25	48
A8	57.89	36	30	69
A9	69.92	20	35	58
A10	53.15	26	17	42

>TRINITY_DN46431_c2_g1_i5 from sample A8 / Example spliced isoform

ATTGTATCACATTAGACAATGTAGCATGGAGTTCAATTGGCGAACCTGATTTGGATACGGCTTCATTCCTTCCTGAATGGAAGCAATCAAGGAGGCACGGTGTTGTTCATGCTTGGCCTGCACTGCGTTGAAGCGATTGAGGAGGCACTGTGTACAAGTAGCAGCTGGATCTTCTACACAGCTGGTTGGATCACCTAGAC
ACCCACCTGCAAAAGGAAATGAAAAGGCTGGATCGTCTGCACACCTAAATGCAAAAGAAAATGAAACAGGTACCGTTTTCCTCTCATAGCTTCATAATATAATAAAAGCAAATAAAATCCATGTGTTCAAAATAATGTGTCATGTGTATAAATTCTGGAATCTACATTGGATTGATTTATTGTGGCAGATTAGTTTGCAT
AGCCTCT

>TRINITY_DN46431_c2_g1_i6 from sample A8 / Example unspliced isoform:

AGGAAATCATGGCAGAATCACAGAAGGAAAAATCTTTGGATCACATAAGATAGTGTGGCATGGAGTTCAATTGGCGAACCTGATTTGGATATGGCTTCATTCCTTCCTGgtgactgtaatttccctttatttctttccttcctccagAATGGAAGCAATCAAGGAGGCACGGTGTTGTTCATGCTTGGCCTGCACTGCGT
TGAAGCGATTGAGGAGGCACTGTGTACAAGTAGCAGCTGGATCTTCTACACAGCTGGTTGGATCACCTAGACACCCACCTGCAAAAGGAAATGAAAAGGCTGGATCGTCTGCACACCTAAATGCAAAAGAAAATGAAACAGGTACCGTTTTCCTCTCATAGCTTCATAATATAATAAAAGCAAATAAAATCCATGTGTTC
AAAATAATGTGTCATGTGTATAAATTCTGGAATCTACATTGGATTGATTTATTGTGGCAGATTAGTTTGCATAGCCTCT

Intron 2 GTAATTTCCC ... CTTCCTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	80	7	17	28
A2	87.5	3	14	21
A3	79.31	6	13	23
A4	87.5	2	6	14
A5	66.67	3	6	6
A6	89.47	2	6	17
A7	69.23	20	4	45
A8	70.71	29	11	70
A9	81.43	13	8	57
A10	64.18	24	3	43

>TRINITY_DN48979_c3_g3_i6 from sample A7 / Example spliced isoform

GTTCAATTGGCGAACCTGATTTGGATACGGCTTCATTCCTTCCTGGTGACTAATGGAAGCAATCAAGGAGGCACTGTGTTGTTCATGCTTGGCCTGCACTGCGTTGAAGCGATTGAGGAGGCACTGTGTACAAGTAGCAGCTGGATCTTCTACACAGCTGGTTGGATCACCTAGACACCCACCTGCAAAAGGAAATGAAA
AGGCTGGATCGTCTGCACACCTAAATGCAAAAGAAAATGAAACAGGTACCGTTTTCCTCTCATAGCTTCCTAATATAATAAAAACAAATAAAATGCATGTGTTCAAAATAATGTGTCATGTGTATAAATTCTGGAATCTACATTAGATTGATTTATTGTGGCAGATTAGTTTGCATAGTCTCTACATATAAGAATTTTGT
AGTATTCTTTATACATTCTGTGTTAGTTAACTGATAGTTTTATTAATTGGTGGTGTGAAACCACCTAAATCAAAATTATAATAGGGAGCTCTTTAATGTTAAGAAAGTCGTATCAGTAAACTAAGTTTCATAAATTGATTTCATTTTAATCTCTTCTTGTCTAAACTCTAGGATCTAGGGTTGCTCCTTGCCATTACTCC
TTCCCAATGTTATAAATCGTCAAGAGTAGGGTTAGTTT

>TRINITY_DN48979_c3_g3_i5 from sample A7 / Example unspliced isoform:

GATATGGCTTCATTCCTTCCTTCGCTTATTGGATATGGCTTCATTCCTTCCTGGTGACTgtaatttccctttatttctttccttcctccagAATGGAAGCAATCAAGGAGGCACTGTGTTGTTCATGCTTGGCCTGCACTGCGTTGAAGCGATTGAGGAGGCACTGTGTACAAGTAGCAGCTGGATCTTCTACACAGCTG
GTTGGATCACCTAGACACCCACCTGCAAAAGGAAATGAAAAGGCTGGATCGTCTGCACACCTAAATGCAAAAGAAAATGAAACAGGTACCGTTTTCCTCTCATAGCTTCCTAATATAATAAAAACAAATAAAATGCATGTGTTCAAAATAATGTGTCATGTGTATAAATTCTGGAATCTACATTAGATTGATTTATTGTG
GCAGATTAGTTTGCATAGTCTCTACATATAAGAATTTTGTAGTATTCTTTATACATTCTGTGTTAGTTAACTGATAGTTTTATTAATTGGTGGTGTGAAACCACCTAAATCAAAATTATAATAGGGAGCTCTTTAATGTTAAGAAAGTCGTATCAGTAAACTAAGTTTCATAAATTGATTTCATTTTAATCTCTTCTTGT
CTAAACTCTAGGATCTAGGGTTGCTCCTTGCCATTACTCCTTCCCAATGTTATAAATCGTCAAGAGTAGGGTTAGTTT