sp|Q9CAZ7|SSL5_ARATH ----> Protein STRICTOSIDINE SYNTHASE-LIKE 5

Intron 1 GTAGAAACTC ... TGCTGCACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.46	8	6	4
A2	16.67	10	3	1
A3	30.43	8	3	4
A4	33.33	9	6	3
A5	6.67	7	0	1
A6	23.48	44	10	17
A7	16.98	22	3	6
A8	20	12	3	3
A9	20.48	33	4	13
A10	33.33	7	1	6

>TRINITY_DN41474_c4_g1_i1 from sample A8 / Example spliced isoform

CCGGGATGGAAAATCGATAGACAAGTCGATTCTAACCCTTGACAATGCAATGCCTGTCTGAAGCAAAAGAATCAGTGGAGGATTTTAGAATTGTGTGAACATAACGTGTAACACTGTAAACTCAAAAGGCGATCAGTAAGAATTAGAAGGGTTTCTCATCCAGCTAGCTTTACCATGGCCAACAATATCATGATTTCAGG
GGTTAGATTGGGATTGATTGTTTTCATAGCAGGGGTCATTCTTTTCAGAATGGCTTGCTGGTGGGAATCGGTGGTGAGGACGTCTATCATAGATGATCCATTGCCCACGTTGCTGCCATTCCCTCCAAAGCTGGAAGGAGTGTATGCGCCGAACACACTGCTGCATGGCATTTCTAAAATTGGGGAAGGGATTCTGCCAC
AACCTGAAGATCTCGCCTTTGACGCCAAAACTGGGCTTCTGTATGCAGCCTGTGGGGATGGCTGGATTAAAAGAATAGCTATAACTCATGCGTTGGATGGTAATTACAAGGTAGAGAATTGGCGTTATGTTGGGGGTCGTCCGCTGGGTATTGTTATGGGCAATCATGGGGAGATGCTTGTCTGTGACCCATTTCAGGGC
TTGCTCAATGTCACGGAGGACAGTGTCCTTGTTCTATCAGATGAGGCCGAGGGCAAGAAATTCAAGTTTGCTGATGGCTTAGATGTGAGTGAGGATGGGTCAGTATATTTCACAGATGCCAGCACCAAATATGGGTTTGGTTATTCAGATTATGATGTCCTTGAGGGCAGACCCAATGGAAGACTGCTGAAATACAGTCC
CGCAACCAACAAAACAACCCAACTCTTGACAGGCTTATACTTCCCCAATGGCGTTGCCCTCTCAGGCGACCAAACATTCCTCATATTTTGCGAGACTTCTAAAGTGAGATGTTCAAAATACTGGCTGGAAGGAGATAAAAAGGGGCAGATAGAGATTTTTATAGAAAACCTGCCTGGATATCCGGACAACATTCGCTATA
ATGGGCATGGCATTTTTTGGATTGGATTGGTATCGAAGCGATCAGCCATGTTGGAGATTCTGTTTAGGATTCCACAGTTGAAATATTATGTAGCTGCAAACAAGGCGGCGATGGAGAAACTAGTTGCAGCTGCACTGAGTATGGGAAGAGTAATTGGAGTGAAAGAAGAAGAGGGGAAAGTAATGTATATGTATGAAGAT
CCTTCTGGAGAAGCAATGCCATTTCTAACGACAGCGTTGCAAGTAGATGATTCCCTTTATCTGGGAGGTTTGGGATCATCTTACATCGGCCGTCTTCAGCTTAATTTATCTTCATTTTAGTGTAAACTGTAGCATGGTTAGTTTTATTACTTTTAAACTGCACAAGTTCACCTGCTGAAACTGGAAATGAAATTTGTATA
TGAAGTTAGGGGAATCAATAGATTGCCCATAAGAGCATGTGGTCATTTACTAAACTTTATGTTCTTGCATGTATACCTTCAATTTTATCTTGTGTATTTTTCGCTAAA

>TRINITY_DN41474_c4_g1_i2 from sample A8 / Example unspliced isoform:

CCGGGATGGAAAATCGATAGACAAGTCGATTCTAACCCTTGACAATGCAATGCCTGTCTGAAGCAAAAGAATCAGTGGAGGATTTTAGAATTGTGTGAACATAACGTGTAACACTGTAAACTCAAAAGGCGATCAGTAAGAATTAGAAGGGTTTCTCATCCAGCTAGCTTTACCATGGCCAACAATATCATGATTTCAGG
GGTTAGATTGGGATTGATTGTTTTCATAGCAGGGGTCATTCTTTTCAGAATGGCTTGCTGGTGGGAATCGGTGGTGAGGACGTCTATCATAGATGATCCATTGCCCACGTTGCTGCCATTCCCTCCAAAGCTGGAAGGAGTGTATGCGCCGAACACACTGCTGCATGGCATTTCTAAAATTGGGGAAGGGATTCTGCCAC
AACCTGAAGATCTCGCCTTTGACGCCAAAACTGGGCTTCTGTATGCAGCCTGTGGGGATGGCTGGATTAAAAGAATAGCTATAACTCATGCGTTGGATGGTAATTACAAGGTAGAGAATTGGCGTTATGTTGGGGGTCGTCCGCTGGGTATTGTTATGGGCAATCATGGGGAGATGCTTGTCTGTGACCCATTTCAGGGC
TTGCTCAATGTCACGGAGGACAGTGTCCTTGTTCTATCAGATGAGGCCGAGGGCAAGAAATTCAAGTTTGCTGATGGCTTAGATGTGAGTGAGGATGGGTCAGTATATTTCACAGATGCCAGCACCAAATATGGGTTTGGTTATTCAGATTATGATGTCCTTGAGGGCAGACCCAATGGAAGACTGCTGAAATACAGTCC
CGCAACCAACAAAACAACCCAACTCTTGACAGGCTTATACTTCCCCAATGGCGTTGCCCTCTCAGGCGACCAAACATTCCTCATATTTTGCGAGACTTCTAAgtagaaactctgttcctgcattcaccataaacaaaataagaaaatggtaaaattttaatcactaagttgtggctaaacctaattatattgtataatgc
tgcacagAGTGAGATGTTCAAAATACTGGCTGGAAGGAGATAAAAAGGGGCAGATAGAGATTTTTATAGAAAACCTGCCTGGATATCCGGACAACATTCGCTATAATGGGCATGGCATTTTTTGGATTGGATTGGTATCGAAGCGATCAGCCATGTTGGAGATTCTGTTTAGGATTCCACAGTTGAAATATTATGTAGCT
GCAAACAAGGCGGCGATGGAGAAACTAGTTGCAGCTGCACTGAGTATGGGAAGAGTAATTGGAGTGAAAGAAGAAGAGGGGAAAGTAATGTATATGTATGAAGATCCTTCTGGAGAAGCAATGCCATTTCTAACGACAGCGTTGCAAGTAGATGATTCCCTTTATCTGGGAGGTTTGGGATCATCTTACATCGGCCGTCT
TCAGCTTAATTTATCTTCATTTTAGTGTAAACTGTAGCATGGTTAGTTTTATTACTTTTAAACTGCACAAGTTCACCTGCTGAAACTGGAAATGAAATTTGTATATGAAGTTAGGGGAATCAATAGATTGCCCATAAGAGCATGTGGTCATTTACTAAACTTTATGTTCTTGCATGTATACCTTCAATTTTATCTTGTGT
ATTTTTCGCTAAA

Intron 2 GTAAGATTAC ... GTGCGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25	9	4	2
A2	20	6	1	2
A3	21.21	13	1	6
A4	24.05	30	11	8
A5	23.08	5	2	1
A6	17.61	138	16	43
A7	19.44	29	7	7
A8	14.55	47	8	8
A9	16.44	61	9	15
A10	15.38	33	6	6

>TRINITY_DN88049_c0_g1_i3 from sample A4 / Example spliced isoform

GGAGGACAGTGTCCTTGTTCTATCAGATGAGGCCGAGGGCAAGAAATTCAAGTTTGCTGATGGCTTAGATGTGAGTGAGGATGGGTCAGTATATTTCACAGATGCCAGCACCAAATATGGGTTTGGTTATTCAGATTATGATGTCCTTGAGGGCAGACCCAATGGAAGACTGCTGAAATACAGTCCCGCAACCAACAAAA
CAACCCAACTCTTGACAGGCTTATACTTCCCCAATGGCGTTGCCCTCTCAGGCGACCAAACATTCCTCATATTTTGCGAGACTTCTAAAGTGAGATGTTCAAAATACTGGCTGGAAGGAGATAAAAAGGGGCAGATAGAGATTTTTATAGAAAACCTGCCTGGATATCCGGACAACATTCGCTATAATGGGCATGGCATT
TTTTGGATTGGATTGGTATCGAAGCGATCAGCCATGTTGGAGATTCTGTTTAGGATTCCACAGTTGAAATATTATGTAGCTGCAAACAAGGCGGCGATGGAGAAACTAGTTGCAGCTGCACTGAGTATGGGAAGAGTAATTGGAGTGAAAGAAGAAGAGGGGAAAGTAATGTATATGTATGAAGATCCTTCTGGAGAAGC
AATGCCATTTCTAACGACAGCGTTGCAAGTAGATGATTCCCTTTATCTGGGAGGTTTGGGATCATCTTACATCGGCCGTCTTCAGCTTAATTTATCTTCATTTTAGTGTAAACTGTAGCATGGTTAGTTTTATTACTTTTAAACTGCACAAGTTCACCTGCTGAAACTGGAAATGAAATTTGTATATGAAGTTAGGGGAA
TCAATAGATTGCCCAT

>TRINITY_DN88049_c0_g1_i1 from sample A4 / Example unspliced isoform:

GGAGGACAGTGTCCTTGTTCTATCAGATGAGGCCGAGGGCAAGAAATTCAAGTTTGCTGATGGCTTAGATGTGAGTGAGGATGGGTCAGTATATTTCACAGATGCCAGCACCAAATATGGGTTTGGTTATTCAGATTATGATGTCCTTGAGGGCAGACCCAATGGAAGACTGCTGAAATACAGTCCCGCAACCAACAAAA
CAACCCAACTCTTGACAGGCTTATACTTCCCCAATGGCGTTGCCCTCTCAGGCGACCAAACATTCCTCATATTTTGCGAGACTTCTAAAGTGAGATGTTCAAAATACTGGCTGGAAGGAGATAAAAAGGGGCAGATAGAGATTTTTATAGAAAACCTGCCTGGATATCCGGACAACATTCGCTATAATGGGCATGGCATT
TTTTGGATTGGATTGGTATCGgtaagattactcctgcttttgcatcacaatcttgttgtattatttgttttgtgaattcattgcacaaatattggtgcgtgcagAAGCGATCAGCCATGTTGGAGATTCTGTTTAGGATTCCACAGTTGAAATATTATGTAGCTGCAAACAAGGCGGCGATGGAGAAACTAGTTGCAGCT
GCACTGAGTATGGGAAGAGTAATTGGAGTGAAAGAAGGA