sp|O48847|LUH_ARATH ----> Transcriptional corepressor LEUNIG_HOMOLOG
Intron 1 GTGAGCGCTC ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 56 | 5 | 14 |
| A2 | 16.36 | 46 | 2 | 9 |
| A3 | 25.58 | 32 | 6 | 11 |
| A4 | 12.5 | 42 | 0 | 6 |
| A5 | 14.29 | 12 | 0 | 2 |
| A6 | 19.35 | 50 | 0 | 12 |
| A7 | 14.49 | 118 | 1 | 20 |
| A8 | 17.28 | 67 | 1 | 14 |
| A9 | 20.69 | 92 | 0 | 24 |
| A10 | 12.62 | 90 | 1 | 13 |
>TRINITY_DN128627_c0_g1_i10 from sample A1 / Example spliced isoformCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAGACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAA
GCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAGGGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTGAGTCTTGTTATGTATATGATCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTT
GGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGGTTCCGCAGATGCGAATTTCGGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATC
TCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAA
AAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGC
AACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAA
AGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCAC
AGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAAT
TCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCA
ATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGT
TCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAGCCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATA
GTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAG
CACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTAC
AGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCTTTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATT
GGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCATACATTCTTTACAGAGACATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGT
GATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATCCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACTCT
TCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCT
GAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAAT
ATCTTTCTTCAGAATTACAAGAGAAAAAGGGGAAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTCTAAGGCCTG
>TRINITY_DN128627_c0_g1_i4 from sample A1 / Example unspliced isoform:GGATGTGTTGCAAGACATGGAGCTATGGATGAAGATATGACATTGTATTATATAGCAATGACAATTTCAGATTTAATTTGTTGCAATATTATTTAGATTTAAATTTGGTTTTAGTGAATTTTTCCAGTCACTCTATATGCATTTATTTTCCAGTCACTCTGTTGTAGAAAAAGTGCTAAATCAGATTCAATTTGTTGAAA
TAATTGTCAGATTTGAATGCAGTGCTATTCAAACATTATGATTGGCTATTGCTGTATTACTTCCAGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATgtgagcgctcattgagtttctagt
gattattggttctgatgagacttgaactgttttcagagaaatgtttcttgcataaattgtactctgtttgcaatgtgaatggaaataattcgtgtcattttattttacagGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAAT
TCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCTTTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATG
CACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCATACATTCTTTACAGAGACATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTG
AGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATCCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACTCTTCCCGCTCATGAAGGTCTCATT
GCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCA
GTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGA
GAAAAAGGGGAAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTCTAAGGCCTG
Intron 2 GTAAAATGAT ... ATCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.78 | 56 | 16 | 37 |
| A2 | 48.25 | 59 | 4 | 55 |
| A3 | 45.89 | 79 | 15 | 67 |
| A4 | 43.03 | 94 | 10 | 71 |
| A5 | 48.31 | 46 | 3 | 43 |
| A6 | 45.71 | 19 | 17 | 16 |
| A7 | 39.34 | 74 | 23 | 48 |
| A8 | 43.24 | 21 | 14 | 16 |
| A9 | 38.36 | 45 | 18 | 28 |
| A10 | 50 | 56 | 12 | 56 |
>TRINITY_DN128627_c0_g1_i10 from sample A1 / Example spliced isoformCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAGACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAA
GCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAGGGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTGAGTCTTGTTATGTATATGATCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTT
GGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGGTTCCGCAGATGCGAATTTCGGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATC
TCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAA
AAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGC
AACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAA
AGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCAC
AGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAAT
TCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCA
ATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGT
TCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAGCCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATA
GTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAG
CACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTAC
AGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCTTTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATT
GGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCATACATTCTTTACAGAGACATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGT
GATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATCCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACTCT
TCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCT
GAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAAT
ATCTTTCTTCAGAATTACAAGAGAAAAAGGGGAAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTCTAAGGCCTG
>TRINITY_DN128627_c0_g1_i6 from sample A1 / Example unspliced isoform:GAGTCTTGTTATGTATATGATCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACA
AGCGAAAATCTGGTTCCGCAGATGCGAATTTCGGgtaaaatgatgtaaataggtagcgaatttagtgcaatttggccaaatttggtgtaaatttgatgcaaaatgatgctccttactgcatttctatttacttttcccgattcctggaatggcgtcaattgagtaaattttttgcaaagaacgatataaatttgtacatt
tatggctcgggcggttgcaaatttagtgaaatgtagcttaagagggataaattttggactccgaaagacgtttcttgcttagctccaattcgttgacatgcatcttcgcagGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTA
TTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCA
AAGTTTCCCCGGATCCAGTAG
Intron 3 GTTTGTGCTT ... CATGATCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.29 | 55 | 2.5 | 7 |
| A2 | 30.46 | 46 | 2.1 | 20.2 |
| A3 | 27.04 | 64 | 3.5 | 23.8 |
| A4 | 15.1 | 49 | 4.2 | 8.8 |
| A5 | 22.2 | 25 | 0.4 | 7.2 |
| A6 | 33.33 | 22 | 1.7 | 11 |
| A7 | 25 | 57 | 2.1 | 19 |
| A8 | 20.59 | 27 | 2.9 | 7 |
| A9 | 14.35 | 40 | 3.8 | 6.8 |
| A10 | 18.03 | 39 | 3.3 | 8.6 |
>TRINITY_DN117422_c6_g1_i1 from sample A3 / Example spliced isoformAATCATTCCATTCAAAATTTCAAATTATTTATTTAACCCATTTGCCAACCTATTATTTTTTTCTTGCATTTAATTTAATTTCAAGAATATATTTTATATTTACTGAGTTATTTCGCAATTTTCACGCCATGCCAAACTATTCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAG
ACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAG
GGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATC
ATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCG
AATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTT
AATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAG
TGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCA
AAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCAT
GGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATT
AGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCA
CTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTT
GGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGA
TGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCCCAT
TCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCA
GCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGCCTAACTTCCCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTA
>TRINITY_DN117422_c6_g1_i2 from sample A3 / Example unspliced isoform:ACAGATGGGTGTCAACACCCAGgtttgtgcttttcttgtgcaaatcctcttttttccctgtaatattgattcatatcattagtgcaatgtttatttttcccgtaggtgtggcaaaatgactttcttatcttggatcatgatccagGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATC
CATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAG
CTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCA
GGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCAT
CAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGT
AGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAA
CATGGATGTCTCAAATGGT
Intron 4 GTAGCGAATT ... ATCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.09 | 50 | 5 | 2 |
| A2 | 5 | 57 | 3 | 2 |
| A3 | 10.11 | 80 | 9 | 3 |
| A4 | 2.27 | 86 | 2 | 0 |
| A5 | 4.17 | 46 | 2 | 0 |
| A6 | 46.43 | 15 | 13 | 7 |
| A7 | 19.54 | 70 | 17 | 0 |
| A8 | 38.89 | 22 | 14 | 0 |
| A9 | 21.15 | 41 | 11 | 0 |
| A10 | 7.81 | 59 | 5 | 3 |
>TRINITY_DN44799_c0_g1_i7 from sample A7 / Example spliced isoformGTGTCTTGTTATGTATAAGATCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCCTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACA
AGCGAAAATCTGGTTCCGCAGATGCGAATTTCGGGTAAAATGATGTAAATAGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATC
CGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGG
TCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGT
ATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCAC
TGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGG
CCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAAT
GGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGC
AACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACT
GGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGT
TGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGT
TGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCATTCCGTACA
TTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAA
TTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGAGGCATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTTCATT
CTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATAT
GATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGA
AGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTCGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGTAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTAT
AGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTGTAAGGCCTATTTTTCCCTTTCAGGTTGCCAAATTTGTACAATAGATACTTCAATATTAAAATTCTTCTTTACAAGGTATAGTTGTGGAAGGCATAAGCCTAATCTGTCTTTTGTAATTAGCTAGTAAATTTGTAAA
GCCCTTCCACTAGCAAATATGTTCCATGTCTGACTAAAAAGTGCCCTGGAATTGTTTTTGTATGCACTCAACTTTTATTAAGATTCATAGCTTCTCTAAATTCCCTGTCAATAATTGTTGTAGCCTGTTATAGAGGCGGAAATGTGGACGCTCTGACATAATTGTGATTATCTATTAATTTTCCATTTGCGGTGTCTTCA
AAGAGCT
>TRINITY_DN44799_c0_g1_i6 from sample A7 / Example unspliced isoform:CCGCATTTGGCGAGACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGATGCCGAGGCTGAGGCTTTTTT
CGGAAAGGGAGGAGGGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTGTGTCTTGTTATGTATAAGATCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTG
CCTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGATTCCGCAGATGCGAATTTCAGGTAAAATGATGTAAATAGgtagcgaatttagtgcaatttggccaaatttggtgtaaatttgatgctccttactgcatttctatttacttt
ttccgattcctagaatggcgtcaattgagtaaaattttggcagagaacgatataaatttgtacatttatggctcgggcggttgcaaatttagtgaaatgtagcttaagagggataaattttggactccgaaagacgtttcttgcttagctccaattcgttgacatgcatcttcgcagGTCGGGATCGTCGATACAGAA
Intron 5 GTGAGTCTTG ... ATCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.24 | 68 | 7 | 37 |
| A2 | 39.57 | 84 | 4 | 55 |
| A3 | 38.73 | 106 | 13 | 67 |
| A4 | 41.28 | 101 | 5 | 71 |
| A5 | 33.33 | 86 | 7 | 43 |
| A6 | 40 | 24 | 2 | 16 |
| A7 | 37.5 | 80 | 6 | 48 |
| A8 | 40 | 24 | 4 | 16 |
| A9 | 35.44 | 51 | 2 | 28 |
| A10 | 33.33 | 112 | 8 | 56 |
>TRINITY_DN117422_c6_g1_i1 from sample A3 / Example spliced isoformAATCATTCCATTCAAAATTTCAAATTATTTATTTAACCCATTTGCCAACCTATTATTTTTTTCTTGCATTTAATTTAATTTCAAGAATATATTTTATATTTACTGAGTTATTTCGCAATTTTCACGCCATGCCAAACTATTCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAG
ACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAG
GGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATC
ATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCG
AATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTT
AATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAG
TGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCA
AAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCAT
GGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATT
AGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCA
CTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTT
GGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGA
TGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCCCAT
TCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCA
GCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGCCTAACTTCCCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTA
>TRINITY_DN117422_c6_g1_i3 from sample A3 / Example unspliced isoform:AATCATTCCATTCAAAATTTCAAATTATTTATTTAACCCATTTGCCAACCTATTATTTTTTTCTTGCATTTAATTTAATTTCAAGAATATATTTTATATTTACTGAGTTATTTCGCAATTTTCACGCCATGCCAAACTATTCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAG
ACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAG
GGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGgtgagtcttgttatgtatatgatcacagattcgtttcttctttcgaacttttgagctcgatttcgtagctgtgttttctttgggagtcgtaggaagtgaaatttggttgaaatgatgcaaaatttgcgtggaatagctaa
atttagtgccggactgtctacgttctaaattttgttgcaaatgatcaaatgtttgcatgacaagcgaaaatctggttccgcagatgcgaatttcgggtaaaatgatgtaaataggtagcgaatttagtgcaatttggccaaatttggtgtaaatttgatgcaaaatgatgctccttactgcatttctatttacttttccc
gattcctggaatggcgtcaattgagtaaaatttttgcagagaacgatataaatttgtacatttatggctcgggcggttgcaaatttagtgaaatgtagcttaagagggataaattttggactccgaaagacgtttcttgcttagctccaattcgttgacatgcatcttcgcagGTCGGGATCGTCGATACAGAACTGCGC
GGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACAT
TTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGC
AAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGC
CTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAA
CCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCAC
CTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCT
CAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGAT
GACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTG
CTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATA
AAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGCCATGATAAAAATGCTTTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGA
ACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCCCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTA
ACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGAGGCATACCAAACCTGTCCACTCGGTT
TGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGA
GAACAAAAGCATGACTCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACA
CATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTCGTGCTATTTCAACCACGCCT
TCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGAAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTCTAAGGCCTATTTTTC
CCTTTCAGGTTGCCAAATTTGTACAATAGATACTTCAATATTAAAATTCTTCTTTTCAAGGTATAGTTGTGGAAGGCATAAGCCTAATCTGTCTTTTGTAATTAGCTAGTAAATTTGTAAAGCCCTTCCACTAGCAAATATGTTCCATGTCTGACTAAAAAGTGCCCTGGAATTGTTTTTGTATGCACTCAACTTTTATT
AAGATTCATAGCTTCTCTAAATTCC
Intron 6 GTAAGCTGAC ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.6 | 117 | 27 | 13 |
| A2 | 17.32 | 74 | 23 | 8 |
| A3 | 14.52 | 53 | 9 | 9 |
| A4 | 22.47 | 69 | 30 | 10 |
| A5 | 20.93 | 34 | 13 | 5 |
| A6 | 19.01 | 245 | 87 | 28 |
| A7 | 18.02 | 307 | 84 | 51 |
| A8 | 20.65 | 415 | 153 | 63 |
| A9 | 17.48 | 262 | 68 | 43 |
| A10 | 20.51 | 155 | 51 | 29 |
>TRINITY_DN44799_c0_g1_i8 from sample A7 / Example spliced isoformGCTGAACATCAGAAGTCACAAGATACATTGATTTAGTTTGTCGTCTAAAGTTATTTGATGCAAATACATGCCTAAAGTCTGATAACCTACTGAATTGCATATAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAG
CTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCA
ACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAA
TGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCC
AAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCAT
CCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCA
AAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACAC
CGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGG
GATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAA
ACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATC
TTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGAGGCAT
ACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTT
GGAATTATGGAATATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTA
AACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCT
CGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGTAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGG
TTACTGTAAGGCCTATTTTTCCCTTTCAGGTTGCCAAATTTGTACAATAGATACTTCAATATTAAAATTCTTCTTTACAAGGTATAGTTGTGGAAGGCATAAGCCTAATCTGTCTTTTGTAATTAGCTAGTAAATTTGTAAAGCCCTTCCACTAGCAAATATGTTCCATGTCTGACTAAAAAGTGCCCTGGAATTGTTTT
TGTATGCACTCAACTTTTATTAAGATTCATAGCTTCTCTAAATTCCCTGTCAATAATTGTTGTAGCCTGTTATAGAGGCGGAAATGTGGACGCTCTGACATAATTGTGATTATCTATTAATTTTCCATTTGCGGTGTCTTCAAAGAGCT
>TRINITY_DN44799_c0_g1_i2 from sample A7 / Example unspliced isoform:CCGCATTTGGCGAGACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGATGCCGAGGCTGAGGCTTTTTT
CGGAAAGGGAGGAGGGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTT
GAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGG
AGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCA
ACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATG
TTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGG
TGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTG
GCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATA
CAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGG
TCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTG
ATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGC
CATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAA
TCCTAACTTCTCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGC
TTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGAGGCATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGC
TGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGgtaagctgacaacgcacttattcagggtagacatttcttttgttgacatacattattgtgcattaaaagagatctacaatatgtgctgatttcttctatttgttgcagTCTTTGGAATTATGGAA
TATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAG
TACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTCGTGCTATTTCA
ACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGTAACTCCGTTTATGCTCAGTCAAATAAATTGAAGCTTAAACACTCATCCTTGGTATGCCTTATTTATTTATAGAAGATCCCGACTCGTACAATTTACGAAGATCTGGACACTTGCAAGGAAGTTTAGGGTTACTGTAAGGC
CTATTTTTCCCTTTCAGGTTGCCAAATTTGTACAATAGATACTTCAATATTAAAATTCTTCTTTACAAGGTATAGTTGTGGAAGGCATAAGCCTAATCTGTCTTTTGTAATTAGCTAGTAAATTTGTAAAGCCCTTCCACTAGCAAATATGTTCCATGTCTGACTAAAAAGTGCCCTGGAATTGTTTTTGTATGCACTCA
ACTTTTATTAAGATTCATAGCTTCTCTAAATTCCCTGTCAATAATTGTTGTAGCCTGTTATAGAGGCGGAAATGTGGACGCTCTGACATAATTGTGATTATCTATTAATTTTCCATTTGCGGTGTCTTCAAAGAGCT
Intron 7 GTAATATTGC ... TTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.95 | 94 | 0 | 28 |
| A2 | 23.38 | 118 | 0 | 36 |
| A3 | 19.1 | 144 | 1 | 34 |
| A4 | 15.09 | 135 | 2 | 24 |
| A5 | 17.65 | 84 | 0 | 18 |
| A6 | 15.38 | 11 | 0 | 2 |
| A7 | 19.17 | 97 | 0 | 23 |
| A8 | 22.86 | 27 | 0 | 8 |
| A9 | 30.84 | 74 | 0 | 33 |
| A10 | 21.54 | 102 | 0 | 28 |
>TRINITY_DN117422_c6_g1_i1 from sample A3 / Example spliced isoformAATCATTCCATTCAAAATTTCAAATTATTTATTTAACCCATTTGCCAACCTATTATTTTTTTCTTGCATTTAATTTAATTTCAAGAATATATTTTATATTTACTGAGTTATTTCGCAATTTTCACGCCATGCCAAACTATTCGCGAACTTTAGCTATATCGCAATTTTCCTGCCATACCAAGTTATCCGCATTTGGCGAG
ACTCGTAACCGAAGCTAAAAACGGACGTGAAGAAGAATCCGAGGCTGATATTTACTAACAATAAATGGTCGCAGAGCCTCTTCTTTACTCCGAGGCAAGTTCGGCGGAGACCGAAATTGTGTAGAGACTCGTCGATACAAAGCTGTCTCCGAGGCTGTCGTTGGGTGCCGAGGCTGAGGCTTTTTTCGGAAAGGGAGGAG
GGAGCTCGGAGATACTCTGCGATTCAGGCTATGGCGGTGAAGGTTTGATCGCTGCAAAAGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATC
ATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCG
AATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTT
AATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAG
TGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCA
AAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCAT
GGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATT
AGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCA
CTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTT
GGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGA
TGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCCCAT
TCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCA
GCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTTACATTCTTTACAGCCTAACTTCCCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGACAGTAACAATGAAATTCGTTA
>TRINITY_DN117422_c6_g1_i9 from sample A3 / Example unspliced isoform:TCGAGCTGTTTTGAAGCCTGAAGgtaatattgcgcctctttttcggagttctgttttatttatttatgattagctaattttattatggagattgcaattgtattaaaaaactgtttttatgcagATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATG
CTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATA
CATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAA
TTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTT
AATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATC
TTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAG
GAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAA
CAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAACCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGA
TGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTC
TCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGT
Intron 8 GTAAAATGAT ... ATCTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.78 | 56 | 16 | 37 |
| A2 | 48.25 | 59 | 4 | 55 |
| A3 | 45.89 | 79 | 15 | 67 |
| A4 | 43.03 | 94 | 10 | 71 |
| A5 | 48.31 | 46 | 3 | 43 |
| A6 | 45.71 | 19 | 17 | 16 |
| A7 | 39.34 | 74 | 23 | 48 |
| A8 | 43.24 | 21 | 14 | 16 |
| A9 | 38.36 | 45 | 16 | 28 |
| A10 | 50 | 56 | 12 | 56 |
>TRINITY_DN107426_c0_g1_i2 from sample A4 / Example spliced isoformCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGGTTCCGCAG
ATGCGAATTTCGGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCC
ATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAA
AAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTC
AACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCA
ACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCA
AGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCAT
GACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAAC
TACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAGCCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCA
ACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACA
AGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCT
GGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTC
CACTCAAACAATGGGGATCTTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCTT
ACATTCTTTACAGAGGCATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCA
TTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAA
AAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATT
ATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGTAACTCCGTTTATGCTCT
>TRINITY_DN107426_c0_g1_i12 from sample A4 / Example unspliced isoform:CACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGGTTCCGCAG
ATGCGAATTTCGGgtaaaatgatgtaaataggtagcgaatttagtgcaatttggccaaatttggtgtaaatttgatgctccttactgcatttctatttacttttcccgattcctagaatggcgtcaattgagtaaaattttggcagagaacgatataaatttgtacatttatggctcgggcggttgcaaatttagtgaaa
tgtagcttaagagggataaattttggactccgaaagacgtttcttgcttagctccaattcgttgacatgcatcttcgcagGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGC
TGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCCATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGC
TCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAAAAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGG
ATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTCAACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCC
GGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCAACACCCAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGAATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGG
GGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACAGCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCT
CATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAATGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACC
CAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAATGCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAGCCATCTTC
CTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAATTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGC
TGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAAATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTT
TGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGC
TGAAAATCCTAACTTCTCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTTATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGG
GGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCATACATTCTTTACAGAGACATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAA
CTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTCATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGA
CAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACAGCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAA
GGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACAAGAGAAAAAGGGGTAACTCCGTTTATGCTCT
Intron 9 GTAATTTTTG ... TTACTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 50 | 11 | 19 |
| A2 | 26.42 | 39 | 14 | 14 |
| A3 | 23.71 | 37 | 10 | 13 |
| A4 | 20 | 54 | 7 | 20 |
| A5 | 8.11 | 17 | 2 | 1 |
| A6 | 17.24 | 48 | 14 | 6 |
| A7 | 15.49 | 90 | 14 | 19 |
| A8 | 23.93 | 62 | 15 | 24 |
| A9 | 18.23 | 74 | 7 | 26 |
| A10 | 22.5 | 62 | 13 | 23 |
>TRINITY_DN107426_c0_g1_i15 from sample A4 / Example spliced isoformCACAGATTCGTTTCTTCTTTCGAACTTTTGAGCTCGATTTCGTAGCTGTGTTTTCTTTGGGAGTCGTAGGAAGTGAAATTTGGTTGAAATGATGCAAAATTTGCGTGGAATAGCTAAATTTAGTGCCGGACTGTCTACGTTCTAAATTTTGTTGCAAATGATCAAATGTTTGCATGACAAGCGAAAATCTGGTTCCGCAG
ATGCGAATTTCGGGTCGGGATCGTCGATACAGAACTGCGCGGCTTCTAGTCCTTCATCTCTACGAATTCGTAGCGGACTCGCATGCTGAGTTTTGATTTCTATTCATGGTGTGGTATTTAGCACAATTCGAGCTGTTTTGAAGCCTGAAGATCATTTTATCCGGAAGGCGTTAGAACGCATAGTTGTTTAGGCATGGCCC
ATAGTAACTGGGAAGCTGATAAGATGCTCGATGTTTACATTTATGATTATTTACTCAAAAGGAATTTGCATACATCGGCAAAAGCCTTTATGCAAGAGGGCAAAGTTTCCCCGGATCCAGTAGCAATTGATGCTCCGGGAGGATTTTTATTCGAATGGTGGTCTGTTTTTTGGGATATCTTTATTGCAAGGACGAATGAA
AAGCACTCCGAAGTTGCAGCTTCATACATAGAGACGCAGCAAATGAAAGCAAGGGAGCAACAGCACCATCAACTGCAGTTGCAACAGATTCAATTACTGCAACAGAGACACGCCCAACAGCAGCAAAGACGGGATGTCAACCCTGGATCTCTTAATGGAGTATCTAATGTCATAAATTCCGAGAACATGCTAGGACAGTC
AACAGCGAATGCCATGGCAACCAAAATTTATGAGGAGCGCCTGAAACATCCACACCAAAGAGATGGGGATTCTTCTGCACAGCTTCTTGATGCAAACAGAACTGCTCTGCTCAAAGCTGCATCTAATCCATCCGGGATGTTACTGCAGAGCAGTGCAGCACTGCAGCAAGTTCAGGCTCGATCTCAACAGATGGGTGTCA
ACACCCAGGTTTGTGCTTTTCTTGTGCAAATCCTCTTTTTTCCCTGTAATATTGATTCATATCATTAGTGCAATGTTTATTTTTCCCGTAGGTGTGGCAAAATGACTTTCTTATCTTGGATCATGATCAAGGATATCAAGAATGATGTTAATGTAGTTTTGAACCAAAGATCCCCTATCACAGATCCATCTCTTTTTGGA
ATGCCAGGAGCTGTGCAACCCAAATCCAATCTTTTGAATCCAGGGATGAATCAAGGGGTTGGTGCCTTACCACTCAAAGGTTGGCCATTAGCTGTGACTCCTGGTATTGACCAGCTTCGACCAAGTTTAGTACAGCAAGGCCAAAAATCTTTCATGCATTCACCTCAACAACTTCATCAATTCCAGCTTCTATCCGCACA
GCAGCAGCAACAAATCTTAATGCAGACTCAACAACAAACACAAGGGAACTTAACCTCATCTGGCTCTCCTGTTCATGGGGAAATGGATCCTCGAAGGTTCAGGGCTTTGTTAAGAGGTGGCATGACTGGCAAAGAGGGCCATCCAGCAGGAAGTGATAGTTCTCAACATGCAGGTTCTCCAATGCAGGCAGCATCTCCAA
TGGCAAGGGCCTCATCACAAGAACAAGCAGATATTCTTATGAAGATGAAGATGACCCAGATACAGCAGCAGCCATTAGCACAGCAACAGCAGCAACAACAGCAAGAGCAGCACCAGCAGCAACTACAGCAGACTGGTACTCAAAACCAACAACAGGATAGGATGACTGGAGTTGTTTGTGTTCCATCAGATTCAAATAAT
GCAATGTCCTTTCAGACAGGTGATCAGAGTGGCAGGAAAAGGAAGCAGCCATCTTCCTCAGGTCCTGCAAACAGCACTGGAACTGGCAATACTGCTGCTCCTTCCCTAAATTCTGCACCATCAACCCCATCAACTCACACACCGGGTGATGTCATGTCCATTGCTGGCACTTTACATCATAGTGGTAGCATGTCGAAGAA
TTTAATGATGTATGGATCAGATGGGACAGGAGGACTCGCATCCCCTTCAAATCAGCTGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAACATGGATGTCTCAA
ATGGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGCTAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCC
AATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAATCCTAACTTCTCATTCCGTACATTCACTGGACATTTGACCTCCGTCATGTCGCTAGATTTCCACTCAAACAATGGGGATCTTCTCTGCTCTTGCGATAGTAACAATGAAATTCGTTATTGGAGTGTTGGCCAAGGCTT
ATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGTGGGGGGAAGCTTCTTGCTGCTGCAGCAGAGAATTTAGTATCCATTTTTGATGTGGAGACTGATGCTTGCATACATTCTTTACAGAGACATACCAAACCTGTCCACTCGGTTTGCTGGGACGCAACTGGTGATTTCTTAGCATCTGTCA
GTGAGGATTCTGTAAGGGTTTGGTCATTGGCCTCTGGCGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTTCATTCTTGTGTCTTCCATCCAAAATACTCTTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACGCTTCCCGCTCATGAAGGTCTC
ATTGCAGGATTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCGAGTCATGACAAATGCGTGAAACTATGGAAATAATATGATAGTAGCTCACAGACTTGGTACTCAAGATTGGTTAAAAAATTGAAATACCTTTGTAAACGAGAGATAGTACTGAACACATTAAGATGATTTGCCTGAATCAGGCTACAAGAACA
GCAGTTCATGGTCCTTTCTTTTGAATAAATTTTGGGTGATTTTTAGAGTTTCTAAAGGAATGCACTGCATTTCTGGTAGTCTGAAGATATGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATTTCAACCACGCCTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTACA
AGAGAAAAAGGGGTAACTCCGTTTATGCTCT
>TRINITY_DN107426_c0_g1_i9 from sample A4 / Example unspliced isoform:ATTGACTTTTGGTATGTTAAGATGAGCTAGATATGGCTAATACTGCATCTCTTTTAAACATTTCTTTGCAGGCTGATATTGAACATTTTGGTGAAGTTGGTTCCTTGGATGAGAATGTTGAATCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGAACAATAAAGCGTAGTCCTACTGAGCACAAC
ATGGATGTCTCAAATGgtaatttttgcttgaagtgtgataaaatctgtgtggatgtgttgcaagacatggagctatggatgaagatatgacattgtattatatagcaatgacaatttcagatttaatttgttgcaatattatttagatttaaatttggttttagtgaatttttccagtcactctatatgcatttattttc
cagtcactctgttgtagaaaaagtgctaaatcagattcaatttgttgaaataattgtcagatttgaatgcagtgctattcaaacattatacttggctattgctgtattacttccagGTTTTTCTTTCAGTGAATTTACTTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGC
TAGCAAGTGCTGGTCATGATAAAAATGCTCTTCTCTGGAATATGGACACTTTAAAACTGAAAAACACTCTCGATGAACATACTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTAGTTTGGCTACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCTGAAAAT