sp|F4IAT2|THOC2_ARATH ----> THO complex subunit 2
Intron 1 GTTAGTGAAA ... TTTTGGTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.22 | 49 | 19 | 9 |
| A2 | 25.93 | 40 | 12 | 16 |
| A3 | 15.91 | 37 | 5 | 9 |
| A4 | 35.14 | 36 | 17 | 22 |
| A5 | 31.58 | 26 | 11 | 13 |
| A6 | 33.33 | 2 | 0 | 2 |
| A7 | 20 | 8 | 2 | 2 |
| A8 | 14.29 | 9 | 1 | 2 |
| A9 | 33.33 | 2 | 0 | 2 |
| A10 | 12.5 | 7 | 0 | 2 |
>TRINITY_DN130269_c0_g1_i4 from sample A1 / Example spliced isoformATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGGCACGCTATCGCTTATATGGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGC
AGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGATATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGC
TTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGAGAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAG
GGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCCCTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAA
AGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAGTGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACAT
TGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGGTAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGA
TCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCAGAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAAT
CTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGACTTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGC
GTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCTGCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAA
ACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGGATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACAT
GGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCTAGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATA
TGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGATGCTGCGGTTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTA
TCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGCAAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTC
TCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGAACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATG
GTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCCAAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCC
CCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
>TRINITY_DN130269_c0_g1_i16 from sample A1 / Example unspliced isoform:ATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGgttagtgaaatttgcagaagctctgttatgggtatcattcacttttaatcagtctgattggt
tttagtggcatgctacgaaagttggaaccttgttgtgtcttgagtcttgactctcccctttgtggaatttggagtctgcatttttctgctatgaatctaatttatcttgtaagatgttactgggaaattgtttaatggaagcaccttttcttctgataattgttcaaattaattttggtaagGCACGCTATCGCTTATAT
GGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGCAGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGA
TATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGCTTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGA
GAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAGGGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCC
CTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAAAGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAG
TGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACATTGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGG
TAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGATCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCA
GAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAATCTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGAC
TTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGCGTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCT
GCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAAACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGG
ATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACATGGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCT
AGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATATGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGGTACTTCCACAGCTGGTTTGTGTAATGCTTCTATTACTGCCTCACAACTTGAGTCTTCTGGTATGCGCAATGCACTGACCAATGCCCCTCCGTCAGATGCTGCGG
TTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTATCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGC
AAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTCTCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGA
ACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATGGTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCC
AAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCCCCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
Intron 2 GTACTTCCAC ... CCTCCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 23 | 22 | 24 |
| A2 | 73.63 | 12 | 41 | 26 |
| A3 | 70.24 | 12.1 | 33 | 24 |
| A4 | 52.94 | 12 | 10 | 17 |
| A5 | 64.71 | 9 | 20 | 13 |
| A6 | 66.67 | 2 | 4 | 4 |
| A7 | 56.92 | 14 | 23 | 14 |
| A8 | 49.65 | 5.1 | 7 | 3 |
| A9 | 81.82 | 2 | 10 | 8 |
| A10 | 57.89 | 8 | 13 | 9 |
>TRINITY_DN130269_c0_g1_i4 from sample A1 / Example spliced isoformATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGGCACGCTATCGCTTATATGGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGC
AGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGATATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGC
TTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGAGAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAG
GGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCCCTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAA
AGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAGTGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACAT
TGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGGTAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGA
TCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCAGAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAAT
CTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGACTTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGC
GTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCTGCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAA
ACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGGATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACAT
GGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCTAGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATA
TGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGATGCTGCGGTTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTA
TCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGCAAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTC
TCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGAACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATG
GTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCCAAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCC
CCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
>TRINITY_DN130269_c0_g1_i16 from sample A1 / Example unspliced isoform:ATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGGTTAGTGAAATTTGCAGAAGCTCTGTTATGGGTATCATTCACTTTTAATCAGTCTGATTGGT
TTTAGTGGCATGCTACGAAAGTTGGAACCTTGTTGTGTCTTGAGTCTTGACTCTCCCCTTTGTGGAATTTGGAGTCTGCATTTTTCTGCTATGAATCTAATTTATCTTGTAAGATGTTACTGGGAAATTGTTTAATGGAAGCACCTTTTCTTCTGATAATTGTTCAAATTAATTTTGGTAAGGCACGCTATCGCTTATAT
GGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGCAGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGA
TATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGCTTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGA
GAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAGGGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCC
CTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAAAGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAG
TGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACATTGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGG
TAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGATCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCA
GAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAATCTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGAC
TTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGCGTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCT
GCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAAACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGG
ATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACATGGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCT
AGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATATGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGgtacttccacagctggtttgtgtaatgcttctattactgcctcacaacttgagtcttctggtatgcgcaatgcactgaccaatgcccctccgtcagATGCTGCGG
TTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTATCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGC
AAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTCTCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGA
ACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATGGTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCC
AAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCCCCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
Intron 3 GTACACTTCT ... GTATCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.67 | 23 | 19 | 10 |
| A2 | 25.93 | 10 | 2 | 5 |
| A3 | 33.33 | 8 | 5 | 3 |
| A4 | 33.33 | 7 | 2 | 5 |
| A5 | 31.25 | 11 | 9 | 1 |
| A6 | 0 | 3 | 0 | 0 |
| A7 | 33.33 | 1 | 1 | 0 |
| A8 | 33.33 | 1 | 0 | 1 |
| A9 | 20 | 4 | 2 | 0 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN130269_c0_g1_i4 from sample A1 / Example spliced isoformATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGGCACGCTATCGCTTATATGGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGC
AGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGATATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGC
TTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGAGAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAG
GGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCCCTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAA
AGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAGTGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACAT
TGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGGTAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGA
TCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCAGAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAAT
CTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGACTTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGC
GTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCTGCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAA
ACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGGATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACAT
GGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCTAGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATA
TGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGATGCTGCGGTTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTA
TCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGCAAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTC
TCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGAACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATG
GTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCCAAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCC
CCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
>TRINITY_DN130269_c0_g1_i15 from sample A1 / Example unspliced isoform:ATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGg
tacacttctcatcaggaattcggcttactcttaccagtttgaaaatgtggctttctcaaaaaaaaatgattgtgcttgaacttgaacttgaatggatcaacaaccgcggggattggaaaccgcttagcgacttaatggtggtatctttagATGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTT
TAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCATTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAA
GTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAA
Intron 4 GTTTATGGCA ... AAATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.48 | 26 | 20 | 2 |
| A2 | 26.32 | 28 | 10 | 0 |
| A3 | 17.95 | 32 | 7 | 0 |
| A4 | 20.37 | 43 | 11 | 0 |
| A5 | 29.63 | 19 | 8 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 6 | 3 | 0 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 16.67 | 5 | 1 | 0 |
| A10 | 0 | 3 | 0 | 0 |
>TRINITY_DN130269_c0_g1_i4 from sample A1 / Example spliced isoformATGGCGTGGACACGCAATGTCCCGCAGCACCTGTGAGGAAAACTAAAAACTTGCAAAGCCCCTTATAGATTTAAAGGCTCCTTGGTTCGTTTTAGTGCGAGGTGACCGTAGCATGTGACGAATTATCCCACCGGGCATTTGTCCCCTCACGTTTATTACGGCGTCTCCCTTGCATTTTTACTTGTTCGCTTGCTTTTCGT
TTCAATTTTTGTTCCCTTACCAGGCCAAAAAAATCCTTTTCATGCAGGGCAAAGCCCTCGGCAATCTCTCTTAGGGTTTGCGCAATTTTTTTCTTTCAGCCTCGGAGTAATTCAATTCACCGTTGCAGCGACAATTTCTTTCATCTACATCAAGCGTTCGAATCTCCTAAAAGTCTCCTCCTCCGCAATGATGATGCAGA
TGCAGCAGCAACAACAGCCGCAGTGTTGGTGAAGAAAGCGGTTTTTGTTTAGAAGCACCGGCGGATTTAAGCTCTGTGCAGTATTATCATGGCTCTGCTTTCCGTGGAGTGCAAATATGTTACGGAGGATTGTATTCGGGAATGGAAAACTGCCGGGAGTAATTTCAAGTTGCAGGCCCCCGTGCCAGCCGCCAGATTCA
TTTACGAGCTCTGCTGGACCCTGGTGCGTGGGGATTTGCCTTTTTCTAAGTGCAGGATTGCACTTGACTCTGTGGAATTTTCTGAAAAGCAAGTCAAGGAGGATGCTGCTTCTATTCTTGCAGATACAGTTGCCCATATGGGTCAAGAACTCACATTGCCTGGGGAATGCAGGGGTCGACTTATTGAATTGGCAAAGTGG
CTTGTTGAATCTGGTCTGATCCCTGTGAGGCTTCTTCAAGAGCGATGCGAGGCCGAATTTCTTTGGGAATCTGAAATGATCAAAATAAAGGCAGCAGAGTTAAAAGCTAAGGAGGTCAGGGTGAATACTCGTCTTTTATATCAGCAAACAAAGTTTAACCTTCTTCGAGAGGAAAGTGAAGGCTATGCAAAATTGGTGAC
TCTTTTATGTCAATGTGGCTCTGGTGGATTGACACATAGGACTGCATCTGCAGCGATTAGCACAATTAAGTCATTAATTGGCCACTTTGATTTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAATGTTTTGAGCTGCAACCCGAAAATGATGCTTTTCTTGAACTAATACCTATTTTCCCAAAGTCTCATGCTGCAC
ATATTCTTGGATTTAAATTCCAGTACTACCTGCGTCCAGAGGTAAATGAGCCTGTACCTGATGGACTGTACAGACTCACAGCAGAACTGGTGAAGGCGGAGTTTATAGATCTTGATAATATATATGCACATTTACAGCCCAAGGATGAAGAGGCGTTTGAGCATTATGAAGAGATCTCAAAAAAGCGTTTTGATGAGGCA
AATAAAATTGGCAAGATAAATCTTGCAGCAACAGGAAAGGATCTGATGGAAGAGGAAAAACCTGGAGATGTTACAATTGATTTATTTGCAGCTCTGGATATGGAAATAGAAGCTGGTGGTGAACGCTCCACAGAACTTGTTACAAATCAAAAACTGGGTCTCCTGAAAGGATTTCTTGCTGTTGATGATTGGTTTCATGC
ACATTTGTTGTTGGAACGTCTCTCTAGTCTTAATGCAGTTGCTCATAAACCAATTTGTGATGGTTTGTTCAGGATTATAGAAACGACAATTTCTTCAAGCTATGCCATTGTGAGGTCGTCACTTTTAGTAAATCTTGGCTCTTCTTATCGACCTGTTGATAATGCGGCAATTGGAGAGGGTGTGGTAAATCATACGGGTC
AAGGATCTTCCTTCATTGAATTGCCTAGAGAACTTTTCCAGATGCTGGCTTCTGTCGGTCCATATCTTTATAGGGATGCTCTTCTTCTACAGAAGGTTTGCAGAGTCCTAAGGGGTTACTATTCATCTGTCTTGGCACTGGTGACATCTTCTGAAGGTACAAGTTCCCAAGATGGAGGGGTAGGAGATCGTAAAGATCCT
CGTCTTCGTTTTAGGGAAGCTCGGTTAAATGTTGAAGAGGCACTGGGAACATGTTTGCTTCCTTCATTACAATTAATACCTGCAAATCCAGCTGTAGGACAAGAGATATGGGAAGTATTGAGTCTTCTGCCTTATGAGGCACGCTATCGCTTATATGGTGAATGGGAGAAAGATGATGAACGCATTCCTGTTGTTTTAGC
AGCTCGTTTGACTGCCAAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGATTGAAGCTTACAAGGATATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGC
TTGAATATGATGTACTGGAATATGTTGTAATTGAGCGCCTTGCTCAAGGAGGGCGCGAAAAACTGAAAGATGATGGTCTTAACTTGTCGGACTGGCTACAATCACTGGCATCATTTTGGGGTCACTTGTGCAAGAAATATCCATCAATGGAGTTGAGAGGCCTTTTCCAATATCTGGTTAATCAACTTAAGAGAGGAGAG
GGCATTGAGCTTGTTCTCCTGCAGGAACTAATCCAGCAAATGGCAAATGTCCAATATACAGAGAATATGACTGAAGAACAGTTAGATTCAATGGCTGGTGGTGAAACTCTTCGATATCAGGCTACATCTTTTGGGATTACGAGAAATAACAAGGCCCTAATCAAGTCCACGAGCAGACTAAGAGATGCTTTACTTCCAAA
AGATGAGCCAAAACTGGCTGTGCCTTTGTTGTGTATTATAGCTCAGCATCGGTCAATTGTTGTCATCAAAGCTGATGCACCACACATAAAGATGGTCAGTGAGCAGTTTGACAGGTGCCATGGCACATTGCTTCAGTATGTGGAATTCTTGATTAGTGCTGTTACACCTGTTACAGCATATGCTCAGCTTATACCTACAT
TGGATGATCTTGCACTTAAGTACCACCTTGATCCAGAGGTAGCGTTTCTAATATATAGGCCAATTATGCGCCTATTCAAGCTTTCTAGAGGGTCTGAGATTTGCTGGCCTGCGGATATATCCAAGGCATTGGTTCAGTTAGATGGTAGTAAAGAGGTAGAACATTGTAATTCATCCTCCGAACTGGTTCTGGATCTTGGA
TCAAATCGGAAGCCTATCACGTGGTCAGACCTGCTTGGAACAGTTCATTCAATGTTGCCATCAAAAGCTTGGAACAGTCTTTCGCCAGAGTTGTATGTTACATTTTGGGGGCTTACATTATATGATTTATATGTTCCTAAAAAGCGATATGAATCAGAGATTGCTAAGCAGCATGCTGCTCTCAAAGCTCTTGAGGAAAT
CTCTGACAATTCCCACAGTGCTATTGCTAAACGTAAGAAAGATAAGGAAAGGATTCAAGAGGTTTTGGATAGACTAAGTAGTGAACTTCAAAAGCAAGAACAGAATGTTGCAGCTGTGCATCAGCGACTTGTACGTGAAAAGGACTCTTGGTTGACTTCTTGCCCAGACTCTTTAAAAATCAACATGGAGTTCTTGCAGC
GTTGTATCTTCCCACGTTGTGTTCTTAGCATGCCAGATGCAGTGTACTGTGCCAAGTTTGTGCACACTCTGCACTCTCTTGGTACACCATTCTTTAACACTGTGAACCACATTGATGTTCTTATATGTAAAGCTTTACCACCCATGATATGCTGCTGCACAGAATTTGAAGCAGGTAGACTTGGGAGGTTTTTGTATGAA
ACATTGAAGATGGCATATTACTGGAAGAGTGATGAGTCAATTTATGAGCGAGAATGTGGCAACATGCCAGGGTTTGCTGTTTATTACAGAGATCCGAATAGCCAACGGGTTACCTTTGCACAGTATATTAAAGTTCATTGGAAGTGGAGTGGGCGGATTACACGTTTACTTATACAATGTTTAGAGTCAAATGAATACAT
GGACACCCGTAATGCCTTGATAATTTTGACAAAAATTTCTAGTGTTTTTCCTGTCACGAAGAAAACAGGATTTAACCTTGAAAGAAGGGTTAGCAAAATCAAGGCTGATGAAAGAGAGGATCTCAAAGTTCTAGCAACAGGGGTTGCTGCAGCCCTAGCTGCTCGAAAGAGTGCGTGGGTTTCAGAGGAGGAGTTCAATA
TGGGTTATGTTGATATAAAGCCCTCAGCTTCTCCTGCAAAACATTTCGCTGATGCTGCGGTTTCACTACCAGACCAGAAATCACATCCAGCGAAAATATCAAGTAATGCTAATGCGGATGTTAGGCTTGAGCGATCTGAGAGTATGACGCCTATTGCCAAATCTGATCTGCATCAGTCTACTATAAAAACTTTACCAGTA
TCAGGCAGTGCAGATTCTCAGAGTTCTCTCAATCTAGGTGGTGCTCAAGCTGGCACAAGCAAGGCATCCATATCTGTAACACAAAAGAAAGAAGATGAGCTTTCAAAGGGTACAGGAGCACTTCAAGCAACAGCAGGAAATAGAACAGATGAAAGTTCAATCAAGGTGGCTCCTAAACTGACTGCTGCAGAATCTGAGTC
TCGACCTCAACCAAAACGTGCAAACCAGGCAGCTTCTATTATTAGGCAATCAAAGGCAGAACCAACAAAAGATGATTCAAGATCTGGAAAAGCTGCTGGTCGACTAGGAATTGCATCATCTACTGGTGACAGGGAAACTGCCTCTCGTACATCAGAAACTCGTCAAGGATTATCTGCTTCTGGTATAGCTGTAAGCAATG
GTGGCACAGGATCTGCTCCTGGAACAGGTAAAGCATCAGGTACCTCCGCAAAGGTTCCCCAAGAGACATTAGCAACTTTTCTCAAGACAGATACTGCAACAAGTAAATCAGTGGATCTAAAAGCACCTGGAGAACAGGATGTTGATAGAATTGAAACTCAAGAAGCATCAGGAATCCAGAAAGGTTATCTTTCCAAGTCC
CCTCAAGATGAAGAAACTTTGCTTCCAAAATCTGTAGATGATATCCAGAAAG
>TRINITY_DN130269_c0_g1_i17 from sample A1 / Example unspliced isoform:ATTATTGTCTTTGCAGTTAGATACGAGGAGGATCCTGAAACGTCTTGCAAAGGAGAATTTAAAGCAACTTGGTCGTATGGTAGCAAAAATAGCTCATGCCAATCCAATGACTGTTCTGCGTACCATAGTGCATCAGgtttatggcacatgtagtattagttgcaagctagttattttaaactattgtgatttgctttatg
tactttttcatgtattctatctgaattagatacttttctttcctgatgtattccatcttagttactggttttctggaaatgtgcagATTGAAGCTTACAAGGATATGATTACTCCTGTTGTGGATGCCTTTAAGTATTTGACACAGGTATAAGCCCATTTCCATTATTGCAGG