sp|Q9FZK1|FBX6_ARATH ----> F-box only protein 6

Intron 1 GTGCTAACTT ... GTCAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	95.62	12	320	204
A2	96.8	12	445	281
A3	97.36	13	572	388
A4	99.35	2	380	228
A5	98.19	4	268	167
A6	95.49	52	1272	932
A7	97.69	37	1874	1253
A8	96.63	25	843	591
A9	97.76	35	1810	1241
A10	98.28	27	1858	1228

>TRINITY_DN116979_c0_g5_i2 from sample A1 / Example spliced isoform

AATGGTTCGTGATCAGAGGGAGACCTCATGGGGAAACCCCTAGGCACTTCCCTGCATTTCACAGATGGTACCCAGTGTAAAGCCGTCGGTGCTGATTACAATGCCTGATCCAGTAGGGACATCGAGTGAGGTACACAATAAAGGCAGCCAGCATGGGGATCTTCCCTAAGATCTCCACATGAAGCTGAAAGCAATCAACC
ACTCATGCTATCCCACCGGCCTCTCAAGTTGAATTGATTGCTGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGA
TGCCACCATGTAACAATTTTCGGCATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAA
GTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGGAGACCTCATGGGGAAAC

>TRINITY_DN116979_c0_g5_i3 from sample A1 / Example unspliced isoform:

GGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGAAGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGgtgctaactttccagcatggacaccaacagcagaaatgagggacatagtattgtcaatgcagGGAGA
CCTCATGGGGAAACCCCTAGGCACTTCCCTGCATTTCACAGATGGTACCCAGTGTAAAGCCGTCGGTGCTGATTACAATGCCTGATCCAGTAGGGACATCGAGTGAGGTACACAATAAAGGCAGCCAGCATGGGGATCTTCCCTAAGATCTCCACATGAAGCTGAAAGCAATCAACCACTCATGCTATCCCACCGGCCTC
TCAAGTTGAATTGATTGCTGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGG
CATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAA
TGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGGAGACCTCATGGGGAAAC

Intron 2 GTGCTAACTT ... TAGAAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	95.19	22	435	40
A2	95.15	30	588	29
A3	95.14	37	725	36
A4	95.61	22	479	33
A5	96.55	12	336	14
A6	95.03	83	1588	151
A7	95.02	128	2444	183
A8	92.97	83	1097	172
A9	94.76	126	2278	166
A10	96.72	81	2391	135

>TRINITY_DN42480_c0_g2_i4 from sample A10 / Example spliced isoform

CTTCTCAACCTTTACCAATTTTTTTGTCAAACATGTAAAGGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGAAGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGGCTTGTAAGTCGGGTAGATGCTGTTGTA
AAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGGCATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGA
TGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGTGAACAC
ATATTTTTCCAGATGTGTTTATGATTTATATGCTTCTCAAGTTGTTAGTATTGTCTTCCTCTTTCAAAAAGCAGTTTCAATTTTAGTTCTCTTCTGTTTTGCATAAAACATTTGAAATGCACTTTAAAATTGACCAAGATTCTGAACTGTGAGTAGTTGATTTTCAGTTCTGCATCTGCTAGTCTCCCTCTGCTCCAGCC
TTTAGATATTTGTTATTGCAAGAAATATATGTCCTAAATCACA

>TRINITY_DN42480_c0_g2_i3 from sample A10 / Example unspliced isoform:

CTTCTCAACCTTTACCAATTTTTTTGTCAAACATGTAAAGGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGAAGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGgtgctaactttccagcatggacaccaac
agcagaaatgagggacatagtattgtcaatgcaggtaaatcacttagtctaaggatgggtgaagagaagccccctccctgtaaaaggcctcgcaaagagaggagcaaaaacaaactttgtaaggatgctgctgtagttatggatgaaaatgtctggaaagagctccctcaggatcttcttgaaaaagtgatttcacggtt
acctattccatccatttttcggttccgattagtttgccgtagttggaattctttgctaaaatcccacagatttcttcaacagtttgcagaggttcctcctcaattcccttggttttacaccataacacatggaaacatatctaatggtgcaatctatgatccatcaatgaacaagtggtatcatttgtcattgccatccc
ctcctcctaaaaccatcatatcatatcatgtcgcctcaacaggaggtcttgtttgtttcattgatatattgcatcacaaattttttatatgtaatccgcttatgatgtcatcccgggaacttccaccaactgtgagagtgtcgtctcaagttgctgtaggcatggtcctgaacaaagcttcgactggttacaaattgctg
tggttagaatgtagtggggattatggagtttatgattcagtagagaatacttggagcaagcctggtgacatgcctcaacacgtaaagcttcctctggctttgaatttcaagtctcagactatcaatatcgatggtgtgatgtattttatgcgcacaaatccagatggtttagtgtcatttgatacagtgaagaatacttg
gcaacagctttcgataccatcaccactgtattccatgggtcatacactggcagtatgcaagggtcacatttttttggtaggattgctatcaaaaaatgatgccacctgtgtttgtgtgtgggagcttgaaaagatgacactcttatggaaggagatagacagaacgccagatacgatgtgccaagaatttaatagaaaac
agGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGGCATCTAGGAAATTCTCT
CGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAATGGTG
AAACTAAAGAAGAGTGAAAGAGGTGAACACATATTTTTCCAGATGTGTTTATGATTTATATGCTTCTCAAGTTGTTAGTATTGTCTTCCTCTTTCAAAAAGCAGTTTCAATTTTAGTTCTCTTCTGTTTTGCATAAAACATTTGAAATGCACTTTAAAATTGACCAAGATTCTGAACTGTGAGTAGTTGATTTTCAGTTC
TGCATCTGCTAGTCTCCCTCTGCTCCAGCCTTTAGATATTTGTTATTGCAAGAAATATATGTCCTAAATCACA

Intron 3 GTAAATCACT ... TAGAAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.65	187	391	40
A2	66.27	254	499	29
A3	63.96	333	591	36
A4	66.3	212	417	33
A5	66.26	138	271	14
A6	63.33	832	1437	151
A7	65.1	1148	2141	183
A8	64.62	552	1008	172
A9	64.77	1076	1978	166
A10	65.35	1089	2054	135

>TRINITY_DN38598_c0_g2_i1 from sample A8 / Example spliced isoform

CAAATATAAAAATCATGGTTAGGGGCCAGTTTAGCGTGGTATATCCAAAAACTCTAATTAAATAATCGGTAGCCATCATTTCAACTAAACCAATCTAAATATTTTAATCACCTTCTCAACCTTTACCAATTTTTTTGTCAAACATGTAAAGGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGA
AGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGGTGCTAACTTTCCAGCATGGACACCAACAGCAGAAATGAGGGACATAGTATTGTCAATGCAGGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTA
AAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGGCATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTA
AGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGTGAACACATATTTTTCCAGATGTGTTTATGATTT
ATATGCTTCTCAAGTTGTTAGTATTGTCTTCCTCTTTCAAAAAGCAGTTTCAATTTTAGTTCTCTTCTGTTTTGCATAAAACATTTGAAATGCACTTTAAAATTGACCAAGATTCTGAACTGTGAGTAGTTGATTTTCAGTTCTGCATCTGCTAGTCTCCCTCTGCTCCAGCCTTTAGATATTTGTTATTGCAAGAAATA
TATGTCCTAAATCACATGAAGTCTATATGTACAGCG

>TRINITY_DN38598_c0_g2_i2 from sample A8 / Example unspliced isoform:

CAAATATAAAAATCATGGTTAGGGGCCAGTTTAGCGTGGTATATCCAAAAACTCTAATTAAATAATCGGTAGCCATCATTTCAACTAAACCAATCTAAATATTTTAATCACCTTCTCAACCTTTACCAATTTTTTTGTCAAACATGTAAAGGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGA
AGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGGTGCTAACTTTCCAGCATGGACACCAACAGCAGAAATGAGGGACATAGTATTGTCAATGCAGgtaaatcacttagtctaaggatgggtgaagagaagccccctccctgtaaaaggcc
tcgcaaagagaggagcaaaaacaaactttgtaaggatgctgctgtagttatggatgaaaatgtctggaaagagctccctcaggatcttcttgaaaaagtgatttcacggttacctattccatccatttttcggttccgattagtttgccgtagttggaattctttgctaaaatcccacagatttcttcaacagtttgcag
aggttcctcctcaattcccttggttttacaccataacacatggaaacatatctaatggtgcaatctatgatccatcaatgaacaagtggtatcatttgtcattgccatcccctcctcctaaaaccatcatatcatatcatgtcgcctcaacaggaggtcttgtttgtttcattgatatattgcatcacaaattttttata
tgtaatccgcttatgatgtcatcccgggaacttccaccaactgtgagagtgtcgtctcaagttgctgtaggcatggtcctgaacaaagcttcgactggttacaaattgctgtggttagaatgtagtggggattatggagtttatgattcagtagagaatacttggagcaagcctggtgacatgcctcaacacgtaaagct
tcctctggctttgaatttcaagtctcagactatcaatatcgatggtgtgatgtattttatgcgcacaaatccagatggtttagtgtcatttgatacagtgaagaatacttggcaacagctttcgataccatcaccactgtattccatgggtcatacactggcagtatgcaagggtcacatttttttggtaggattgctat
caaaaaatgatgccacctgtgtttgtgtgtgggagcttgaaaagatgacactcttatggaaggagatagacagaacgccagatacgatgtgccaagaatttaatagaaaacagGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCT
GGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGGCATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTG
GAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGTGAACACATATTTTTCCAGATGTGTTTATGATTTATATGCTTCTCAAGTTGTTAGTATTGTCTTCC
TCTTTCAAAAAGCAGTTTCAATTTTAGTTCTCTTCTGTTTTGCATAAAACATTTGAAATGCACTTTAAAATTGACCAAGATTCTGAACTGTGAGTAGTTGATTTTCAGTTCTGCATCTGCTAGTCTCCCTCTGCTCCAGCCTTTAGATATTTGTTATTGCAAGAAATATATGTCCTAAATCACATGAAGTCTATATGTAC
AGCG

Intron 4 GTAAATCACT ... AGTGAAAGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.71	204	391	15
A2	63.97	281	499	21
A3	60.37	388	591	18
A4	64.65	228	417	6
A5	61.87	167	271	11
A6	60.66	932	1437	137
A7	63.08	1253	2141	79
A8	63.04	591	1008	87
A9	61.45	1241	1978	104
A10	62.58	1228	2054	55

>TRINITY_DN116979_c0_g5_i3 from sample A1 / Example spliced isoform

GGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGAAGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGGTGCTAACTTTCCAGCATGGACACCAACAGCAGAAATGAGGGACATAGTATTGTCAATGCAGGGAGA
CCTCATGGGGAAACCCCTAGGCACTTCCCTGCATTTCACAGATGGTACCCAGTGTAAAGCCGTCGGTGCTGATTACAATGCCTGATCCAGTAGGGACATCGAGTGAGGTACACAATAAAGGCAGCCAGCATGGGGATCTTCCCTAAGATCTCCACATGAAGCTGAAAGCAATCAACCACTCATGCTATCCCACCGGCCTC
TCAAGTTGAATTGATTGCTGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGG
CATCTAGGAAATTCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAA
TGGAGCTTGAAATGGTGAAACTAAAGAAGAGTGAAAGAGGGAGACCTCATGGGGAAAC

>TRINITY_DN116979_c0_g5_i1 from sample A1 / Example unspliced isoform:

GGAGGCGCCCCACCCAATTGTTGCCATGCGGTTGATTGTTTAAAGGGCGAAGGAGGAGGTCTAGCAATGGAGAATGTAGAGATTTTTTCGATTGATTGAAGATTGAGAAATCTGCAATGGTTCGTGATCAGAGGTGCTAACTTTCCAGCATGGACACCAACAGCAGAAATGAGGGACATAGTATTGTCAATGCAGgtaaa
tcacttagtctaaggatgggtgaagagaagccccctccctgtaaaaggcctcgcaaagagaggagcaaaaacaaactttgtaaggatgctgctgtagttatggatgaaaatgtctggaaagagctccctcaggatcttcttgaaaaagtgatttcacggttacctattccatccatttttcggttccgattagtttgccg
tagttggaattctttgctaaaatcccacagatttcttcaacagtttgcagaggttcctcctcaattcccttggttttacaccataacacatggaaacatatctaatggtgcaatctatgatccatcaatgaacaagtggtatcatttgtcattgccatcccctcctcctaaaaccatcatatcatatcatgtcgcctcaa
caggaggtcttgtttgtttcattgatatattgcatcacaaattttttatatgtaatccgcttatgatgtcatcccgggaacttccaccaactgtgagagtgtcgtctcaagttgctgtaggcatggtcctgaacaaagcttcgactggttacaaattgctgtggttagaatgtagtggggattatggagtttatgattca
gtagagaatacttggagcaagcctggtgacatgcctcaacacgtaaagcttcctctggctttgaatttcaagtctcagactatcaatatcgatggtgtgatgtattttatgcgcacaaatccagatggtttagtgtcatttgatacagtgaagaatacttggcaacagctttcgataccatcaccactgtattccatggg
tcatacactggcagtatgcaagggtcacatttttttggtaggattgctatcaaaaaatgatgccacctgtgtttgtgtgtgggagcttgaaaagatgacactcttatggaaggagatagacagaacgccagatacgatgtgccaagaatttaatagaaaacaggcttgtaagtcgggtagatgctgttgtaaagtggaag
atgtggattttcatagtaaagaattagcaaaatttgcagcatgctctgctggaggcatggaaattgcagttgaaaaacaaactcctcaaatttctgcagaagctgtgtggtcccatatggatgccaccatgtaacaattttcggcatctaggaaattctctcgatcagaacatgtaaatgttctgagatgatgtatcgta
aactacaaaactgttttaagaatttgagatgcgagtttaggtctttactggaggagtgggacacaaaaatttgtctctacaagagtctctggggattctgaagtggcagtggattccttaagtttgagatcaagcttacaagaatggagcttgaaatggtgaaactaaagaagagtgaaagagGGAGACCTCATGGGGAA
ACCCCTAGGCACTTCCCTGCATTTCACAGATGGTACCCAGTGTAAAGCCGTCGGTGCTGATTACAATGCCTGATCCAGTAGGGACATCGAGTGAGGTACACAATAAAGGCAGCCAGCATGGGGATCTTCCCTAAGATCTCCACATGAAGCTGAAAGCAATCAACCACTCATGCTATCCCACCGGCCTCTCAAGTTGAATT
GATTGCTGCTTGTAAGTCGGGTAGATGCTGTTGTAAAGTGGAAGATGTGGATTTTCATAGTAAAGAATTAGCAAAATTTGCAGCATGCTCTGCTGGAGGCATGGAAATTGCAGTTGAAAAACAAACTCCTCAAATTTCTGCAGAAGCTGTGTGGTCCCATATGGATGCCACCATGTAACAATTTTCGGCATCTAGGAAAT
TCTCTCGATCAGAACATGTAAATGTTCTGAGATGATGTATCGTAAACTACAAAACTGTTTTAAGAATTTGAGATGCGAGTTTAGGTCTTTACTGGAGGAGTGGGACACAAAAATTTGTCTCTACAAGAGTCTCTGGGGATTCTGAAGTGGCAGTGGATTCCTTAAGTTTGAGATCAAGCTTACAAGAATGGAGCTTGAAA
TGGTGAAACTAAAGAAGAGTGAAAGAGGGAGACCTCATGGGGAAAC