NA ----> NA
Intron 1 GTAATGTGTT ... TTTATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 28 | 14 | 3 |
| A2 | 35.29 | 11 | 6 | 6 |
| A3 | 2.44 | 40 | 1 | 0 |
| A4 | 26.92 | 19 | 7 | 1 |
| A5 | 31.58 | 13 | 6 | 3 |
| A6 | 19.82 | 89 | 22 | 0 |
| A7 | 23.71 | 222 | 69 | 2 |
| A8 | 19.27 | 264 | 63 | 3 |
| A9 | 23.43 | 134 | 41 | 1 |
| A10 | 19.22 | 269 | 64 | 0 |
>TRINITY_DN112856_c0_g1_i1 from sample A2 / Example spliced isoformGTTGAGCTTACGGCTGTGTAACAGGCCTGTATGTGGATTTCAAGGGCCAGGCCGCAGCAGAGAATTTCAAGAGCTAGGCCGCAACAGAGAAGAGGCGTTTAGGCCAGGCCGAGAAAAGAAGAGCCATGTTAGCCAGAGCCATGCCATGGCAAGCATAGAAGAGGCATTTAGGCCAGAAGAACCACGCCGAGCAGAGAATA
GGCATTCAGGCCAGAGCCATGCCCAACAGAGAAGAGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCCGAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATG
AGCCAGGCCGCATCAGATAATTTCAAGAGCTAGGCGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGGCCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGT
TTACATTTTCTTTCTTTTGTCTTTAATTGAAGCATGGCCATGCTCGTCTTTTGAGATTTTTTTAAACCTATGATTCTGTTTTCTCTTTCTTTTGTTCTTTTCATTCTGTTTTCTCTTTCTTTTGTTTTCTTCATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGT
CTGGGTTTGGATAGAGTGATAAAATGATGCTGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTGTACAAGAAAACATG
GTTATGCCACGAAGGAACTTGTTATGTTTAAGGTATGATTTGAGATTAAATTTTTGGCCATGTAGATGATATTTCAGAACATGTCAAACTTATGCTTAGGTGCTCTCTTAGTTTGTCTTTTAATATATTTGGCATACATAAAATGTGTTATACACATTACATGTTTCAGCATTATCACTAT
>TRINITY_DN112856_c0_g1_i7 from sample A2 / Example unspliced isoform:GTTGAGCTTACGGCTGTGTAACAGGCCTGTATGTGGATTTCAAGGGCCAGGCCGCAGCAGAGAATTTCAAGAGCTAGGCCGCAACAGAGAAGAGGCGTTTAGGCCAGGCCGAGAAAAGAAGAGCCATGTTAGCCAGAGCCATGCCATGGCAAGCATAGAAGAGGCATTTAGGCCAGAAGAACCACGCCGAGCAGAGAATA
GGCATTCAGGCCAGAGCCATGCCCAACAGAGAAGAGGCATTTAAGCCAGAGCCACGCCGAGAGTCACGCCGTGCCAAGCAGAGAAGAGGCATTTAAGCCAGAAGAACTACGCCGAGCAGAGAAGAGGAAACCCATGCCCAGAAGATAGGATAGGAGAGTTGAGCTTACGGCTGTGTGACAGCCTCTATGTAGATTTCATG
AGCCAGGCCGCATCAGATAATTTCAAGAGCTAGGCGGCAGCAGAGAAGAAGCGTTTAGGCCACGCCGAACAGAGAAGAGCCTTGTTAGCTAGAGCAGAGAAGAGGCGTTTAGGCCAGAGCCACGCCCAGTAGAGAAGAGAAGCCGGGCCGAGGAGAGTTGAGCCGAATAGAATTTGGGAGTTCTATGAATGTCTCTCGGT
TTACATTTTCTTTCTTTTGTCTTTAATTGAAGCATGGCCATGCTCGTCTTTTGAGATTTTTTTAAACCTATGATTCTGTTTTCTCTTTCTTTTGTTCTTTTCATTCTGTTTTCTCTTTCTTTTGTTTTCTTCATTTTAATTGGTTAAATTTTATTTGGTTATGTTTTGTTTATTTGGGCTTGTTTCTTTATCTTTTGGGT
CTGGGTTTGGATAGAGTGATAAAATGATGCTGTGAAGAATAGCAGATGATATAAGGGATTCTATGTTTTCTGGACGTCATTGAGAGCGCAACGGCCACAAGgtaatgtgtttcattatagtaaatatcaaaatgtatttataccatatgttattttgtatttttctattgttttgtgtggctaatatttttggtttattt
tagAGGACAGAGGCAGAGTTAAGACGAGATACCATATACGCAGCAAGAATTCAGATGGCCTCCTAAATTTCTTTCAAGATTACATGTAAGTTTTTGTTGGTGAC