sp|Q9FT72|RQL3_ARATH ----> ATP-dependent DNA helicase Q-like 3
Intron 1 GTTCTCTTCA ... TTCTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.48 | 37 | 7.7 | 17 |
| A2 | 18.42 | 31 | 1.7 | 7 |
| A3 | 5.26 | 36 | 8.6 | 2 |
| A4 | 34.78 | 15 | 4 | 8 |
| A5 | 15.79 | 16 | 2.8 | 3 |
| A6 | 0 | 5 | 1.7 | 0 |
| A7 | 16.42 | 56 | 5.6 | 11 |
| A8 | 23.4 | 36 | 2.2 | 11 |
| A9 | 19.8 | 52.7 | 9.4 | 13 |
| A10 | 15.15 | 28 | 2.2 | 5 |
>TRINITY_DN125820_c7_g2_i6 from sample A1 / Example spliced isoformGTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGCATTGATGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCA
TTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTTGTTGAATCTCATTGCCATAGATGAGGCACACTGC
ATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAATCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGT
TCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATGCTGAAGGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGG
ACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGC
ATGGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGAGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATG
CAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGCAGGCCGGGAACATCTGGAAGGGGATATGAACAAATGGAATCAGAATTTTGGAATCATGATAATGAAAATACTGATTCAGAAGATGATATTTCCAGTTCAGATG
ATGAAGCTTCCAAAATGGTAGAAGCAACTATGAGAGATCAAAACATTGGCAATGCACGGCTAGATGAGAAGCTTGATCGCTTGTTACGCGCTGAAGAAGCATTTCTTGCAAAGCAAGGCCTCCATCAAGAGAAAAAAGGACTCAGTGACAAGAAGATGGTACCAGAAAATCTAAGGTATGCTGCAAGACAAAGGCTGAAA
ACTGCAGTGCAGCAAGCAGTCCAGCGACTTGGAGAAGAAAAGCTTGAGACACAAATGGTTTCCACAACTTTGGAGAATCAATGCTACAGAAAGTACGGAAAATCAGGAAAATCATTTTACAACTCTCAAGTAGCCAGCACAGTTCGGTGGCTTGCAAACTCAAGTTGGGCAGACATTCAGAGTCGGATAGAACCCGATAC
TGCTCTACAGGATAACAAATCCAGTTCCTCTTTGCCATTAAATGAAAATGGTCCTTCAACGAAAATAAATTGCTCTCCAATTGCGCCTGGAACATGCTCTACCGATAAATCTAATAAGCTTGAGAAAGTTCATGAGAAACAGAGATTTGCTGGTCACAAAAGAACATCTCAACAGTCCAATATTCCATGCTTGACTGAAA
ATGCAACAGCTACAGAACTTCCTCCAATTCCATCTTTCACCAATTTTGCAGTAAGGCAGGGTAAAGATAGTAACATAGAAATGTACAATGCAGACAAAAAACCTCAAAAGAAAGTACCAAAAAACACGTTTTCTCCAAAACAAAACACATCTAAGCATACTATTCTCCATTCAGGAGATGCTTCTGTGAAGAAAAGGAAA
TTGCCTGCTATACCAACCTTTGATGAGTTCAGCAAGATGTGACAGCAGTATGTATGCTTAGAATTTATGCAATTATGGATGCTGCTTTGAGTATTTATGGATCAATATGCAAATTTGAATTCCAAAACTGTGTAACAAAGCATCACCTAGAGTTCCACAGTTACTTGGTTAACCGATTTTATACTACTTTTCTTCCCTTC
ATTACATGTTCATATATCTTCTCTCTCTCCTTTACTGGCAGGAATTCACAAACTTTTAAAGAAATTTT
>TRINITY_DN125820_c7_g2_i1 from sample A1 / Example unspliced isoform:CTTGCACATTTTGGAGAACAGgttctcttcattggtcaactattcttttattgtttgtttatcagatatctatttgttttattagtgttgagccaaagtgttagaccatctagcaaatatataatgttgattgtataatttctatgcagGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATGCAAACATCCAAGT
CGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGGTACATGAGAAATATCATAGGAGATCATTCTTGGAGTTCTTTGTTAGTTTGTTTTAACAATCTTACTAGACATGCAACTTGAATTAAAATGTTCTGG
Intron 2 GTCACAATAT ... TTTTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.2 | 24 | 23 | 16.6 |
| A2 | 32.55 | 27 | 16 | 10.1 |
| A3 | 17.94 | 23 | 5 | 5.1 |
| A4 | 43.83 | 18.9 | 17 | 12.5 |
| A5 | 15.9 | 8 | 2 | 1.1 |
| A6 | 32.31 | 2 | 1 | 1.1 |
| A7 | 17.19 | 17 | 5 | 2.2 |
| A8 | 8.28 | 11 | 0 | 2.2 |
| A9 | 11.58 | 28.8 | 3 | 4.8 |
| A10 | 13.17 | 25 | 5 | 2.7 |
>TRINITY_DN125820_c7_g2_i9 from sample A1 / Example spliced isoformGTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGCATTGATGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCA
TTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTTGTTGAATCTCATTGCCATAGATGAGGCACACTGC
ATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAATCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGT
TCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATGCTGAAGGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGG
ACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGTATTACTCTATTCTATGCGTAATTTACATTCATTGTTTGTCAACACATGCCGATGCTTTTCTTTTCACGAAGGCTTTCCTTGTAGCTAAATAGGATCTAAATGACATGTAAACTACATCCTTGGATAAAAAGAAGTTGAAGTGCAGATCT
ATTTTGCAATGAATTCCCATTTTCTATCAATCACTAAGCGATTAAACTTAAAAGGAAGAAGTGTTGAGAGACTAATCCAACAAGGGAAAATGGAGCCAAGGGGTTATTCCAAGAGTACTGATTTCTTCATATGTAGAGGTGAGAATGACCATCATTGATGTATCATTCAAACTTTAACTTTGCTGGAAATTATTTTTAAG
AGATTTGCAGAGGGAAAGCAATCTAGGATTTGCTTTCAAGTCTAGATTCAATAGGTTATTTACTCGTGGAATTTCACCATGCAAGAAAAACTATTAGTCTATTTGATATAACTTGATTTAGATCTTTCTCATTTCATAAATAACAAGCAAGATAGGGAGAGAGGAAACTTCACACCTATTTCACTTCATTTGATGTAGAT
ACACCTT
>TRINITY_DN125820_c7_g2_i3 from sample A1 / Example unspliced isoform:GTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGGTGTGTTTTCTTTGTTGTGTCACTTTTTGTTACCTTGGATTT
TGGAAGTCCATTTTTGTCTTTTGTTCTTCAAGATCTAAGAGTTCTACATCTTTTCTCTTCACGCTGTGTTTTCTTTGTTGTGTCACTTTTTGTTACCTTGGATTTTGGAAGTCCATTTTTGTCTTTTTTGTTCTTCAAGATCTAACAGTTCTACATCTTTTTTCTTCACGCTGGTTCATGCTGGTTGTGTTGAACAGCAT
TGATGGTAAGAAACTTTATTTGCTTTGCCACTCTTGTATCATTTCCTAGATATTGATAGTGAAAATCCTTTAAGTGACTGACCTGAAATGTCCATTGTCGTTGGTTTTGAAGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCATTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGGTGA
TATCTGTCAACAACAAGAAACATTAACTTATCAAAACAATACTTGTTTTCTTGTGTGTATTCTGACACTTGGTGGAATTTCCAGATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTT
GTTGAATCTCATTGCCATAGATGAGgtcacaatatattttactttcaagtcaaactggttttagatgtattttggtgtccaaagacaaaaatgtcaatcttgtagtaaacttaattatattttcttttctgctttttggtagGCACACTGCATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAA
TCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGTTCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATG
CTAAAAGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGGACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGG
GATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGCATGGTTGTTTTCAATTTTATTTTGCATTTCTAATTTTCATTTGATCTCT
GTAGTGATTTTATGGATTTCTGATAAAGCTTAAGTGCTTTCAGGATTTTTTTGTTATTAAATTACAGT
Intron 3 GCTCTGCGAT ... CTTCCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.23 | 38.4 | 5.4 | 16.2 |
| A2 | 23.97 | 26 | 5.6 | 8.4 |
| A3 | 28.67 | 40 | 11.2 | 17 |
| A4 | 33.72 | 22 | 2.4 | 11.4 |
| A5 | 22.67 | 4 | 0.6 | 1.2 |
| A6 | 10 | 5 | 1 | 1 |
| A7 | 30.55 | 35 | 6.6 | 16 |
| A8 | 39.34 | 8 | 3.6 | 5.2 |
| A9 | 31.99 | 25 | 7 | 12.2 |
| A10 | 16.76 | 28 | 6.8 | 7 |
>TRINITY_DN115713_c0_g1_i15 from sample A3 / Example spliced isoformGCTTGTTAATAGTTCTTGTGCTTTTGAGAAATCTGAGGATGGAATCTTACTCAGTTTCCTATGATTGCAGTTCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATGCTAAAAGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATT
GAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGGACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAAT
CTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGCATGGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGG
AGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATGCAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGCAGGCCGGGAACATCTGGAAGGGGATATGAACA
AATGGAATCAGAATTTTGGAATCATGATAATGAAAATACTGATTCAGAAGATGATATTTCCAGTTCAGATGATGAAGCTTCCAAAATGGTAGAAGCAACTATGAGAGATCAAAACATTGGCAATGCACGGCTAGATGAGAAGCTTGATCGCTTGTTACGCGCTGAAGAAGCATTTCTTGCAAAGCAAGGCCTCCATCAAG
AGAAAAAAGGACTCAGTGACAAGAAGATGGTACCAGAAAATCTAAGGTATGCTGCAAGACAAAGGCTGAAAACTGCAGTGCAGCAAGCAGTCCAGCGACTTGGAGAAGAAAAGCTTGAGACACAAATGGTTTCCACAACTTTGGAGAATCAATGCTACAGAAAGTACGGAAAATCAGGAAAATCATTTTACAACTCTCAA
GTAGCCAGCACAGTTCGGTGGCTTGCAAACTCAAGTTGGGCAGACATTCAGAGTCGGATAGAACCCGATACTGCTCTACAGGATAACAAATCCAGTTCCTCTTTGCCATTAAATGAAAATGGTCCTTCAACGAAAATAAATTGCTCTCCAATTGCGCCTGGAACATGCTCTACCGATAAATCTAATAAGCTTGAGAAAGT
TCATGAGAAACAGAGATTTGCTGGTCACAAAAGAACATCTCAACAGTCCAATATTCCATGCTTGACTGAAAATGCAACAGCTACAGAACTTCCTCCAATTCCATCTTTCACCAATTTTGCAGTAAGGCAGGGTAAAGATAGTAACATAGAAATGTACAATGCAGACAAAAAACCTCAAAAGAAAGTACCAAAAAACACGT
TTTCTCCAAAACAAAACACATCTAAGCATACTATTCTCCATTCAGGAGATGCTTCTGTGAAGAAAAGGAAATTGCCTGCTATACCAACCTTTGATGAGTTCAGCAAGATGTGACAGCAGTATGTATGCTTAGAATTTATGCAATTATGGATGCTGCTTTGAGTATTTATGGATCAATATGCAAATTTGAATTCCAAAACT
GTGTAACAAAGCATCACCTAGAGTTCCACAGTTACTTGGTTAACCGATTTTATACTACTTTTCTTCCCTTCATTACATGTTCATATATCTTCTCTCTCTCCTTTACTGGCAGGAATTCACAAACTTTTAAAGAAATTTTATGAGCAATACATAAATTTTGTTGGCAT
>TRINITY_DN115713_c0_g1_i3 from sample A3 / Example unspliced isoform:CATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGgctctgcgattgatcttccatcagGATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGC
TTTGATGATCGGAGGAGCATGGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGAGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGG
TAAAACTTGTGATTCATGCAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGGTACATGAGAAATATCATAGGAGATCATTCTTGGAGTTCTTTGTTAGTTTGTTTTAACAATCTTACTAGACATGCAACTTGAATTA
AAATGTTCTGGTTTGGGATATTAATCCCTGCCTTTCCCTTAAATGGTTCTCCAAGCAATAAACAATATTTGAGCAACTATTCAATTTGTCCAC
Intron 4 GTGATATCTG ... GAATTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12 | 22 | 4.3 | 3 |
| A2 | 25 | 12 | 3.7 | 4 |
| A3 | 14.81 | 23 | 0.4 | 4 |
| A4 | 25 | 39 | 3.9 | 13 |
| A5 | 0 | 5 | 0 | 0 |
| A6 | 10 | 9 | 0.1 | 1 |
| A7 | 27.78 | 13 | 0.1 | 5 |
| A8 | 0 | 6 | 0.2 | 0 |
| A9 | 8.33 | 22 | 0.2 | 2 |
| A10 | 6.25 | 15 | 0.7 | 1 |
>TRINITY_DN125820_c7_g2_i9 from sample A1 / Example spliced isoformGTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGCATTGATGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCA
TTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTTGTTGAATCTCATTGCCATAGATGAGGCACACTGC
ATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAATCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGT
TCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATGCTGAAGGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGG
ACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGTATTACTCTATTCTATGCGTAATTTACATTCATTGTTTGTCAACACATGCCGATGCTTTTCTTTTCACGAAGGCTTTCCTTGTAGCTAAATAGGATCTAAATGACATGTAAACTACATCCTTGGATAAAAAGAAGTTGAAGTGCAGATCT
ATTTTGCAATGAATTCCCATTTTCTATCAATCACTAAGCGATTAAACTTAAAAGGAAGAAGTGTTGAGAGACTAATCCAACAAGGGAAAATGGAGCCAAGGGGTTATTCCAAGAGTACTGATTTCTTCATATGTAGAGGTGAGAATGACCATCATTGATGTATCATTCAAACTTTAACTTTGCTGGAAATTATTTTTAAG
AGATTTGCAGAGGGAAAGCAATCTAGGATTTGCTTTCAAGTCTAGATTCAATAGGTTATTTACTCGTGGAATTTCACCATGCAAGAAAAACTATTAGTCTATTTGATATAACTTGATTTAGATCTTTCTCATTTCATAAATAACAAGCAAGATAGGGAGAGAGGAAACTTCACACCTATTTCACTTCATTTGATGTAGAT
ACACCTT
>TRINITY_DN125820_c7_g2_i3 from sample A1 / Example unspliced isoform:GTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGGTGTGTTTTCTTTGTTGTGTCACTTTTTGTTACCTTGGATTT
TGGAAGTCCATTTTTGTCTTTTGTTCTTCAAGATCTAAGAGTTCTACATCTTTTCTCTTCACGCTGTGTTTTCTTTGTTGTGTCACTTTTTGTTACCTTGGATTTTGGAAGTCCATTTTTGTCTTTTTTGTTCTTCAAGATCTAACAGTTCTACATCTTTTTTCTTCACGCTGGTTCATGCTGGTTGTGTTGAACAGCAT
TGATGGTAAGAAACTTTATTTGCTTTGCCACTCTTGTATCATTTCCTAGATATTGATAGTGAAAATCCTTTAAGTGACTGACCTGAAATGTCCATTGTCGTTGGTTTTGAAGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCATTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGgtga
tatctgtcaacaacaagaaacattaacttatcaaaacaatacttgttttcttgtgtgtattctgacacttggtggaatttccagATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTT
GTTGAATCTCATTGCCATAGATGAGGTCACAATATATTTTACTTTCAAGTCAAACTGGTTTTAGATGTATTTTGGTGTCCAAAGACAAAAATGTCAATCTTGTAGTAAACTTAATTATATTTTCTTTTCTGCTTTTTGGTAGGCACACTGCATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAA
TCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGTTCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATG
CTAAAAGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGGACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGG
GATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGCATGGTTGTTTTCAATTTTATTTTGCATTTCTAATTTTCATTTGATCTCT
GTAGTGATTTTATGGATTTCTGATAAAGCTTAAGTGCTTTCAGGATTTTTTTGTTATTAAATTACAGT
Intron 5 GTTGTTTTCA ... TGTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.1 | 39 | 13.8 | 23 |
| A2 | 20 | 48 | 13.8 | 12 |
| A3 | 13.64 | 38 | 10 | 6 |
| A4 | 22.22 | 21 | 6.8 | 6 |
| A5 | 35.71 | 9 | 0 | 5 |
| A6 | 0 | 7 | 3.8 | 0 |
| A7 | 19.54 | 70 | 15.8 | 17 |
| A8 | 25.35 | 53 | 8.3 | 18 |
| A9 | 13.64 | 76 | 27 | 12 |
| A10 | 15.38 | 33 | 8.3 | 6 |
>TRINITY_DN125820_c7_g2_i6 from sample A1 / Example spliced isoformGTGGAAGATGAATATATGCTAGTACAAAACGTTTTACAAAAATACATTGGCTAGCAAATATTTTCCAGCGATACGTAAAACCTTTCAATTCAACTAAGCATTTAAACAGCGCGCAATTTCATTTCGTCATCGAAGCTTGCAAGGGAGGCCTCTGCTCTACTCGGAATATTGAAAGCTGCATCTCGGCCCTTTTCCCTCCA
CACGAGAATTGGATTTTATCCTGTTTATTGGCTCATCTGCATATTCTATTTTCTGTGATCTTCGGATCTTATGATATATTTCAAATGAAAAGAGCACTGCTACCGCCATCTAAGTCTTCATCCAATAGTGCAAATGAAAAGTTGGGTGATGGCAATCAAAAGGAATTGCTATCAAAGCTTTTGCAGCAACATTTTGGACA
TTCCAACTTTAGAGGACGACAACTTGAGGCCATTGAAACTGTTTTAGCAGGAAAGGATTGTTTTTGTCTTATGCCAACAGGAGGTGGAAAGTCCTTGTGCTACCAAATTCCTGCAGTTGCGAAGGCTGGAATTGTTCTTGTTGTCTCACCACTGATAGCATTGATGGAAAACCAAGTTTCTATTCTCAAGTCTCAAGGCA
TTCCTGCAGAATATTTGTCCTCAACACAAAAAATAGCTACCAAAGAGAAGATATATGATGACATTGACTCTGGAAAGCCTATCTTGCGATTACTCTATGTTACACCAGAACTGATTGCAACTAACGGGTTTATGACAAAATTAAAGAAAGTTCATTCCCGAGGCTTGTTGAATCTCATTGCCATAGATGAGGCACACTGC
ATTTCATCATGGGGCCATGATTTCAGATCCAGTTACCGCAAATTGTCAATCCTGAGAAGTTGCCTTCCTGGTGTGCCAATATTAGCGCTAACAGCCACAGCTGCTAGAAAGGTTCAGGAGGATGTTATCAAGTCATTGTGTTTGCATCAACCATCAATACTTCAGACATCATTTAATCGGCCGAATATCTTTTATGAAGT
TCGATACAAAGATCTCTTGAACGATGCATATATGGATTTACTAGATATGCTGAAGGCAGCTAAACAAGACTGCACAATAATTTATTGTCTTGCACGAAATACATGTGATGATATTGGTGCCCGTCTATTGAAAGATGGCATTTCCTGTCGTGTCTATCATGCAGGATTGGGTGATAGGGTTCGTAGCCAAGCACTGGAGG
ACTGGGCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGC
ATGGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGAGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATG
CAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGCAGGCCGGGAACATCTGGAAGGGGATATGAACAAATGGAATCAGAATTTTGGAATCATGATAATGAAAATACTGATTCAGAAGATGATATTTCCAGTTCAGATG
ATGAAGCTTCCAAAATGGTAGAAGCAACTATGAGAGATCAAAACATTGGCAATGCACGGCTAGATGAGAAGCTTGATCGCTTGTTACGCGCTGAAGAAGCATTTCTTGCAAAGCAAGGCCTCCATCAAGAGAAAAAAGGACTCAGTGACAAGAAGATGGTACCAGAAAATCTAAGGTATGCTGCAAGACAAAGGCTGAAA
ACTGCAGTGCAGCAAGCAGTCCAGCGACTTGGAGAAGAAAAGCTTGAGACACAAATGGTTTCCACAACTTTGGAGAATCAATGCTACAGAAAGTACGGAAAATCAGGAAAATCATTTTACAACTCTCAAGTAGCCAGCACAGTTCGGTGGCTTGCAAACTCAAGTTGGGCAGACATTCAGAGTCGGATAGAACCCGATAC
TGCTCTACAGGATAACAAATCCAGTTCCTCTTTGCCATTAAATGAAAATGGTCCTTCAACGAAAATAAATTGCTCTCCAATTGCGCCTGGAACATGCTCTACCGATAAATCTAATAAGCTTGAGAAAGTTCATGAGAAACAGAGATTTGCTGGTCACAAAAGAACATCTCAACAGTCCAATATTCCATGCTTGACTGAAA
ATGCAACAGCTACAGAACTTCCTCCAATTCCATCTTTCACCAATTTTGCAGTAAGGCAGGGTAAAGATAGTAACATAGAAATGTACAATGCAGACAAAAAACCTCAAAAGAAAGTACCAAAAAACACGTTTTCTCCAAAACAAAACACATCTAAGCATACTATTCTCCATTCAGGAGATGCTTCTGTGAAGAAAAGGAAA
TTGCCTGCTATACCAACCTTTGATGAGTTCAGCAAGATGTGACAGCAGTATGTATGCTTAGAATTTATGCAATTATGGATGCTGCTTTGAGTATTTATGGATCAATATGCAAATTTGAATTCCAAAACTGTGTAACAAAGCATCACCTAGAGTTCCACAGTTACTTGGTTAACCGATTTTATACTACTTTTCTTCCCTTC
ATTACATGTTCATATATCTTCTCTCTCTCCTTTACTGGCAGGAATTCACAAACTTTTAAAGAAATTTT
>TRINITY_DN125820_c7_g2_i2 from sample A1 / Example unspliced isoform:GGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGCATGgttgttttcaattttattttgcatttctaattttcatttgatctctgta
gtgattttatggatttctgataaagcttaagtgctttcaggattttttgttattaaattacagtgtattgcagGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGA
GACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATGCAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGCAGGCCGGGAACATCTGGAAGGGGATATGAACAA
ATGGAATCAGAATTTTGGAATCATGATAATGAAAATACTGATTCAGAAGATGATATTTCCAGTTCAGATGGTAATGGATTGCTTCTATTGCATCTAATTTCATTAATCTCATTTTTTATATTCTTATTCATAGCTACTACTTCGTCTCTTTAGGATTTTAAGCAGTAATTATCAGAAACTGCATACACAATATCAGAAAA
TCCAGACCAACAAATTGAGAGAGAAGCATTCTAATTGATTGCTTCATTTTCCCAAAAGACTTTTATGTGGCTGTATGTAGGTAAATGACTATTCACTTCAAATTCCCAAAATTAGAAAGTAATGAAATGACTAGTTTAAGATAGTCATAATAAATTGACTTTATTGCAAAGTGTACTTTCTAACTTAAGTTCCTAAAGTA
CTAGGTATGTTCAATAAATATCTAACTTTATCACCTTCCCTTAATGGTCATACAAGAAATTACACCAAGCTTATCTCTGAAATACACAAATTATTTGGAGTCTGGACTGTTATGCCACATTCTGCAGGCATACTTTTTCACACTTATTTTTGCTTCAGAGTATTATGCATTCTAGACTACTGAGGCCCATCTCTGCTGCT
Intron 6 GTAAATATTC ... TATCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.89 | 16 | 2 | 22 |
| A2 | 57.69 | 11 | 4 | 15 |
| A3 | 42.86 | 16 | 7 | 12 |
| A4 | 52.17 | 11 | 0 | 12 |
| A5 | 60 | 2 | 0 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 46.43 | 15 | 0 | 13 |
| A8 | 38.46 | 8 | 0 | 5 |
| A9 | 41.67 | 14 | 2 | 10 |
| A10 | 33.33 | 4 | 2 | 2 |
>TRINITY_DN115713_c0_g1_i3 from sample A3 / Example spliced isoformCATCAGGAAAAGTTCCAGTCGTGGTAGCGACAGTAGCCTTTGGGCTCTGCGATTGATCTTCCATCAGGATGGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGC
TTTGATGATCGGAGGAGCATGGAATACATTTTAAGTAACTCCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGAGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGG
TAAAACTTGTGATTCATGCAAACATCCAAGTCGATTGTCTAAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGGTACATGAGAAATATCATAGGAGATCATTCTTGGAGTTCTTTGTTAGTTTGTTTTAACAATCTTACTAGACATGCAACTTGAATTA
AAATGTTCTGGTTTGGGATATTAATCCCTGCCTTTCCCTTAAATGGTTCTCCAAGCAATAAACAATATTTGAGCAACTATTCAATTTGTCCAC
>TRINITY_DN115713_c0_g1_i6 from sample A3 / Example unspliced isoform:TGTTCTCTCTGTCTCAAATCAAGGGCTGACGGTTTACACATCTTTGGTTTAACTCAACTTTCACTTTTATTTGTTATTATGTCAAGTCAACTGTTATTTTCCTTTAGAGAGGAGATGCCCTAGGCATTTTTTATTGTTCCATTGTTACTTGTTGTAGTTCCAAGTTCCATGACATATTTTGGTCATTGTTGGACATTAAT
ATAATTTCACTTCATTAGTGTTGTGTGGTCATTTATTGTATTTTATAATATTATTTCATTTGCTGTTGCAATTGATGTATGTTTCTTTTAACTCCATGTGCTTGTTCTGTGCAATACAGTGGTGTGCTGCAGTTCACGGTTAACAGCTTTTTAGTAATAACGATTTTTGGTGAAGTTTCAAAAGAACTAGAGTTTTGAAT
ATACAGAATAATCATTTTTATAATTATGTTTTTAGTAGTGATGACCGCATGATGGATGAAATATTCTTCAAGCTGTTCGACTTGTTAGATTGTATTGTTTGTCAATGTATACATTTGTTTTGTGGTAACCATTTTCTAGTAGGTTTATATGTCTTGTATTGCCATATTTGAATTTAAATCCATCGTTTTCTTCTTACTTG
ATTCTGATTTTCTTGATCAACTTTATAATCTGGAATGCGGGCTCTGCGATTGATCTTCCATCAGGATGgtaaatattcctttctagtcattctgttaagaaacaaatgcattataattactagttttactgtccagggatttgatggatggctgcatttgatatgtactccattcttgcaacagtagtatctttagagat
ggagctgctaatctattggtatatcatacagGGAATAGATCGAAAAGATGTGCGAATTGTATGTCATTTTAATATTCCAAAGTCTATGGAGTCATTTTATCAAGAATCTGGAAGAGCAGGACGTGATCAAAAACCATCAAGAAGTTTAATTTACTATGGCTTTGATGATCGGAGGAGCATGGAATACATTTTAAGTAACT
CCTTACAACAAAAGGGACATAAAGATAAGTCTGAAGATGCAATGCGCAAGAAATGTCTTGGTGATTTTGGTCAGATGGTTGAATATTGTGAAGGTTCTGGTTGTCGGAGACAGAAAATCCTTGCACATTTTGGAGAACAGGTATCTTTGTCATTGTGTGGTAAAACTTGTGATTCATGCAAACATCCAAGTCGATTGTCT
AAGGAGCTAGAGGAGCTTTCGAGAATATCTAGTACTCGTGGGAAAAATAATCTTCCTTCGGTTATCATTGGCAGCAGGCCGGGAACATCTGGAAGGGGATATGAACAAATGGAATCAGAATTTTGGAATCATGATAATGAAAATACTGATTCAGAAGATGATATTTCCAGTTCAGATGATGAAGCTTCCAAAATGGTAGA
AGCAACTATGAGAGATCAAAACATTGGCAATGCACGGCTAGATGAGAAGCTTGATCGCTTGTTACGCGCTGAAGAAGCATTTCTTGCAAAGCAAGGCCTCCATCAAGAGAAAAAAGGACTCAGTGACAAGAAGATGGTACCAGAAAATCTAAGGTATGCTGCAAGACAAAGGCTGAAAACTGCAGTGCAGCAAGCAGTCC
AGCGACTTGGAGAAGAAAAGCTTGAGACACAAATGGTTTCCACAACTTTGGAGAATCAATGCTACAGAAAGTACGGAAAATCAGGAAAATCATTTTACAACTCTCAAGTAGCCAGCACAGTTCGGTGGCTTGCAAACTCAAGTTGGGCAGACATTCAGAGTCGGATAGAACCCGATACTGCTCTACAGGATAACAAATCC
AGTTCCTCTTTGCCATTAAATGAAAATGGTCCTTCAACGAAAATAAATTGCTCTCCAATTGCGCCTGGAACATGCTCTACCGATAAATCTAATAAGCTTGAGAAAGTTCATGAGAAACAGAGATTTGCTGGTCACAAAAGAACATCTCAACAGTCCAATATTCCATGCTTGACTGAAAATGCAACAGCTACAGAACTTCC
TCCAATTCCATCTTTCACCAATTTTGCAGTAAGGCAGGGTAAAGATAGTAACATAGAAATGTACAATGCAGACAAAAAACCTCAAAAGAAAGTACCAAAAAACACGTTTTCTCCAAAACAAAACACATCTAAGCATACTATTCTCCATTCAGGAGATGCTTCTGTGAAGAAAAGGAAATTGCCTGCTATACCAACCTTTG
ATGAGTTCAGCAAGATGTGACAGCAGTATGTATGCTTAGAATTTATGCAATTATGGATGCTGCTTTGAGTATTTATGGATCAATATGCAAATTTGAATTCCAAAACTGTGTAACAAAGCATCACCTAGAGTTCCACAGTTACTTGGTTAACCGATTTTATACTACTTTTCTTCCCTTCATTACATGTTCATATATCTTCT
CTCTCTCCTTTACTGGCAGGAATTCACAAACTTTTAAAGAAATTTTATGAGCAATACATAAATTTTGTTGGCAT