sp|Q5XUX6|RMI1_ARATH ----> RecQ-mediated genome instability protein 1
Intron 1 GTAAGATACA ... TTGCAATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.91 | 26 | 18 | 2.6 |
| A2 | 14.29 | 6 | 1 | 0.2 |
| A3 | 22.22 | 14 | 4 | 1.6 |
| A4 | 21.05 | 15 | 4 | 0.6 |
| A5 | 45.45 | 6 | 5 | 1.2 |
| A6 | 29.79 | 33 | 14 | 3 |
| A7 | 23.44 | 49 | 15 | 5.2 |
| A8 | 31.71 | 28 | 13 | 4.8 |
| A9 | 16.07 | 47 | 9 | 5.4 |
| A10 | 22 | 39 | 11 | 3 |
>TRINITY_DN112726_c0_g1_i2 from sample A1 / Example spliced isoformATTTACTTTTTTCCTTGGATTTTTTTTAATTTTTTTCCTTGGAAAAGCATTTACTATTTTGTGGTAGTTCCGAGTAACCAACATAATTTTATTGTGTAAATTTCTGAACTTAATCTGTGTGAGAGTTTAAGAACCGTCCAAAACATAATTTCCTATACGCCCTTCAGAATTCCTTCATCTTTGGACACGGCGTAGTAAAA
TCCTCCGACCTGTATTCTGATCAGCATTGAACTGTTCGTGAGGGACGGCAGAAATAATAAAACAAAATGCAAAACAGGAAAGGTACTCGGCAGTCGAAATGAAAAGAAATACAGAGGGCTTAAGGTTCAGATGGAATTGCTTCATTCTACCCTTAACTTGGTTTCCCCAAATCCAGTTATCTAGCCCACTTCATCAAATT
GCTACGATTGAGGCCTAATTTATATTGGGCAGCTGATAGAAACACCAAACATACCCCGTGGCCTCTGCATAACGGCAGGACTGAAGGCAGCATGGCGGAGGAAGAGCTGTTTCTGACGCTTCAGTCGCGAGGATGGTATCTCAAAGATGTTACCGTTGTGGAAGGCCTGTTGCAGGAGGTCTCAACGGAGAAATTAGGTC
GCGCGGAATTGGAAAAGATGATCGAGGCGAACCTTCTGGAAATGGATCTGAAGGTGGTGGGGGGTAAATGCTTACCCGATTCAGCTGCTCTTCATCGCGCATCCCGCCTTCAAGGACCAAAGATTTTGCAGATTGTATCCCTAAGGAATATACGCCAGAGCAGTGATAGGGCAATGGTCCCCAGCCAACAGAAGGATGGT
CGTCTCCTACGTATTTGTCTCACTGACGGACACTCAAACATCACAGCAATTGAGTATGGTGGAATACCGTTGATTTCAGAAGATATGGCTCCTGGTACAAAGGCTTATCCGGTCCACCGCCTTTTGAAAGGCTGAACATTGAAACAGCTCCAGTTCGAAGTAGTCATAAGGCAGAATTACAAGTTCACCAGTCATATGGT
TCTCGCGGGGTGCTATCTCAAAGAGATAAGCCAATAGCGTCAAAGTTGACCAACGAGAACACTGGCACAGATGTTATGATGCAGGGTGCTGCCACTGTGAAGGCTGGTGGAAAACTACTTGATACAAGCACATATCAAATGAAGGATAATGCAGGCCCTTTGAAGAATGGGAATATAACCACGGAACGAGTGAGAATAGG
ATATGAAGTGTACCAGCCAAAAGCATTCCAGAACAAACCAGTAGAGAGTTCACAGTTAGGTGCAAAATCACTCGAAAAGGCTTCTATTTGTTCTGATACAGAAATAAACTTACTCACAGGGAATCAAAAACCAAAGTTTTCTGAAGCAGAAATAAAATCTACTCAAGTTAAAACTAACAATATGCAGGCTGAGTTGAGAA
AAAATGAGATTCTTGAAGGAGGGCAACCTGATTCAATAATTCGCAAAATGAATTTGGGTGCTGAGGCAGTACCAATTCAAAATCAGGCTGCCTCGCAAAAGCTTCTAAAGAAAATGAGTGATAAAGGTAGGGAACATGGGGAATTCAAGCATGGTAGATCTGGAAAGTTTAGAGGAAACCAAGAAGCAACTGCCCTTTTA
ACCCTGGATGAATGGGAGCTCCAAAAGGGAAAAATGAAGGCGACTTCAAGCTGGAGCAATGATGTCTCTCAAGATGCAGAACTAGCTAGACAGCTTCAAAACCAGTTAGATTTAGAAGATTCAAATGCAAAGATGGCACATGAACAGGAAGCAGAAAGAATTCGAATGAGTATCTTCAACTTTGGGAATACAAGTAATAG
TAGTGAAAATAGAGGAAGGAAACCGAGAGGACGAGGTAGGGGTAACAAGCGATTTTAATGGACCATGTATCAAGCCTTTTCTAGCTCTCTGAAAAAAGGAAAAACTAGAGGCATCTCCTGTTTCTGTCACGGAACTTATGTTCTGTTGTATTTATTTCTCACCCATGGTAAATTTCAGAGACAGATGGCTTGCTTAACAG
CCAGATGTTTATTCCCAATTCAATCAAAATCACAGATTTTGTGGTATAATTTTTTCAGTGCATATTCGTGGTCGGATTAGTATTTTAAATGTTTTGCAGTTATTATCTTGATGTATGGTTTAGGGTCTTTATAATCTAGTGATCTTGGCCAGCCGCTGATTGGATAGTCGACCTATCGATCTATTCAGGATTAGTTGAGG
CTAATGGATGGATGAAAGATGAAAGTCCAGTGGACTTATCCATATATGTATTATATTTGTACTTTGTCCTTTGTATTTTATCTTTTTGTGGGTCATTATTGAGTGTCGGTCAAAAATGATCACCCACCAAAATTTTGTATTCTATATTTGTACATCTAAGAGAATTGGTCT
>TRINITY_DN112726_c0_g1_i5 from sample A1 / Example unspliced isoform:ATTTACTTTTTTCCTTGGATTTTTTTTAATTTTTTTCCTTGGAAAAGCATTTACTATTTTGTGGTAGTTCCGAGTAACCAACATAATTTTATTGTGTAAATTTCTGAACTTAATCTGTGTGAGAGTTTAAGAACCGTCCAAAACATAATTTCCTATACGCCCTTCAGAATTCCTTCATCTTTGGACACGGCGTAGTAAAA
TCCTCCGACCTGTATTCTGATCAGCATTGAACTGTTCGTGAGGGACGGCAGAAATAATAAAACAAAATGCAAAACAGGAAAGGTACTCGGCAGTCGAAATGAAAAGAAATACAGAGGGCTTAAGGTTCAGATGGAATTGCTTCATTCTACCCTTAACTTGGTTTCCCCAAATCCAGTTATCTAGCCCACTTCATCAAATT
GCTACGATTGAGGCCTAATTTATATTGGGCAGCTGATAGAAACACCAAACATACCCCGTGGCCTCTGCATAACGGCAGGACTGAAGGCAGCATGGCGGAGGAAGAGCTGTTTCTGACGCTTCAGTCGCGAGGATGGTATCTCAAAGATGTTACCGTTGTGGAAGGCCTGTTGCAGGAGGTCTCAACGGAGAAATTAGGTC
GCGCGGAATTGGAAAAGATGATCGAGGCGAACCTTCTGGAAATGGATCTGAAGGTGGTGGGGGGTAAATGCTTACCCGATTCAGCTGCTCTTCATCGCGCATCCCGCCTTCAAGGACCAAAGATTTTGCAGATTGTATCCCTAAGGAATATACGCCAGAGCAGTGATAGGGCAATGGTCCCCAGCCAACAGAAGGATGGT
CGTCTCCTACGTATTTGTCTCACTGACGGACACTCAAACATCACAGCAATTGAGTATGGTGGAATACCGTTGATTTCAGAAGATATGGCTCCTGGTACAAAGGTTTGTTTTGAGGGAATTGCTTCAGTGAAGAGTGGAATATTATTGCTGGAAAGTCGATCCTTAAATGTATTGGGGGGTTTTGTGCAATCTCTTTACGA
GGAATGGGAAATAGAGCGTAAATATTCAGTATTTTCTCGTTCTTCATTGAATTCATCTCAAGTTCCAGGCTTATCCGGTCCACCGCCTTTTGAAAGGCTGAACATTGAAACAGCTCCAGTTCGAAGTAGTCATAAGGCAGAATTACAAGTTCACCAGTCATATGGTTCTCGCGGGGTGCTATCTCAAAGAGATAAGCCAA
TAGCGTCAAAGTTGACCAACGAGAACACTGGCACAGATGTTATGATGCAGGGTGCTGCCACTGTGAAGGCTGGTGGAAAACTACTTGATACAAGCACATATCAAATGAAGGATAATGCAGGCCCTTTGAAGAATGGGAATATAACCACGGAACGAGTGAGAATAGGATATGAAGTGTACCAGCCAAAAGCATTCCAGAAC
AAACCAGTAGAGAGTTCACAGTTAGGTGCAAAATCACTCGAAAAGGCTTCTATTTGTTCTGATACAGAAATAAACTTACTCACAGGGAATCAAAAACCAAAGTTTTCTGAAGCAGAAATAAAATCTACTCAAGTTAAAACTAACAATATGCAGGCTGAGTTGAGAAAAAgtaagatacaaatgatctttatatttgaatt
tacacattcctttaatcttatattgaaatatgatgtaattagtcagctttcttttacatcccaaagtgtgtctcttgcaatcagATGAGATTCTTGAAGGAGGGC
Intron 2 GTTTGTTTTG ... CAAGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.42 | 7 | 12 | 41 |
| A2 | 81.25 | 6 | 11 | 26 |
| A3 | 68.21 | 13 | 11 | 28 |
| A4 | 67.76 | 8 | 7 | 17 |
| A5 | 75 | 1 | 0 | 3 |
| A6 | 73.68 | 6 | 5 | 17 |
| A7 | 86.23 | 15 | 21 | 94 |
| A8 | 81.34 | 10 | 17 | 43.6 |
| A9 | 80.49 | 18 | 14 | 74.4 |
| A10 | 85.09 | 17 | 41 | 97.2 |
>TRINITY_DN112726_c0_g1_i2 from sample A1 / Example spliced isoformATTTACTTTTTTCCTTGGATTTTTTTTAATTTTTTTCCTTGGAAAAGCATTTACTATTTTGTGGTAGTTCCGAGTAACCAACATAATTTTATTGTGTAAATTTCTGAACTTAATCTGTGTGAGAGTTTAAGAACCGTCCAAAACATAATTTCCTATACGCCCTTCAGAATTCCTTCATCTTTGGACACGGCGTAGTAAAA
TCCTCCGACCTGTATTCTGATCAGCATTGAACTGTTCGTGAGGGACGGCAGAAATAATAAAACAAAATGCAAAACAGGAAAGGTACTCGGCAGTCGAAATGAAAAGAAATACAGAGGGCTTAAGGTTCAGATGGAATTGCTTCATTCTACCCTTAACTTGGTTTCCCCAAATCCAGTTATCTAGCCCACTTCATCAAATT
GCTACGATTGAGGCCTAATTTATATTGGGCAGCTGATAGAAACACCAAACATACCCCGTGGCCTCTGCATAACGGCAGGACTGAAGGCAGCATGGCGGAGGAAGAGCTGTTTCTGACGCTTCAGTCGCGAGGATGGTATCTCAAAGATGTTACCGTTGTGGAAGGCCTGTTGCAGGAGGTCTCAACGGAGAAATTAGGTC
GCGCGGAATTGGAAAAGATGATCGAGGCGAACCTTCTGGAAATGGATCTGAAGGTGGTGGGGGGTAAATGCTTACCCGATTCAGCTGCTCTTCATCGCGCATCCCGCCTTCAAGGACCAAAGATTTTGCAGATTGTATCCCTAAGGAATATACGCCAGAGCAGTGATAGGGCAATGGTCCCCAGCCAACAGAAGGATGGT
CGTCTCCTACGTATTTGTCTCACTGACGGACACTCAAACATCACAGCAATTGAGTATGGTGGAATACCGTTGATTTCAGAAGATATGGCTCCTGGTACAAAGGCTTATCCGGTCCACCGCCTTTTGAAAGGCTGAACATTGAAACAGCTCCAGTTCGAAGTAGTCATAAGGCAGAATTACAAGTTCACCAGTCATATGGT
TCTCGCGGGGTGCTATCTCAAAGAGATAAGCCAATAGCGTCAAAGTTGACCAACGAGAACACTGGCACAGATGTTATGATGCAGGGTGCTGCCACTGTGAAGGCTGGTGGAAAACTACTTGATACAAGCACATATCAAATGAAGGATAATGCAGGCCCTTTGAAGAATGGGAATATAACCACGGAACGAGTGAGAATAGG
ATATGAAGTGTACCAGCCAAAAGCATTCCAGAACAAACCAGTAGAGAGTTCACAGTTAGGTGCAAAATCACTCGAAAAGGCTTCTATTTGTTCTGATACAGAAATAAACTTACTCACAGGGAATCAAAAACCAAAGTTTTCTGAAGCAGAAATAAAATCTACTCAAGTTAAAACTAACAATATGCAGGCTGAGTTGAGAA
AAAATGAGATTCTTGAAGGAGGGCAACCTGATTCAATAATTCGCAAAATGAATTTGGGTGCTGAGGCAGTACCAATTCAAAATCAGGCTGCCTCGCAAAAGCTTCTAAAGAAAATGAGTGATAAAGGTAGGGAACATGGGGAATTCAAGCATGGTAGATCTGGAAAGTTTAGAGGAAACCAAGAAGCAACTGCCCTTTTA
ACCCTGGATGAATGGGAGCTCCAAAAGGGAAAAATGAAGGCGACTTCAAGCTGGAGCAATGATGTCTCTCAAGATGCAGAACTAGCTAGACAGCTTCAAAACCAGTTAGATTTAGAAGATTCAAATGCAAAGATGGCACATGAACAGGAAGCAGAAAGAATTCGAATGAGTATCTTCAACTTTGGGAATACAAGTAATAG
TAGTGAAAATAGAGGAAGGAAACCGAGAGGACGAGGTAGGGGTAACAAGCGATTTTAATGGACCATGTATCAAGCCTTTTCTAGCTCTCTGAAAAAAGGAAAAACTAGAGGCATCTCCTGTTTCTGTCACGGAACTTATGTTCTGTTGTATTTATTTCTCACCCATGGTAAATTTCAGAGACAGATGGCTTGCTTAACAG
CCAGATGTTTATTCCCAATTCAATCAAAATCACAGATTTTGTGGTATAATTTTTTCAGTGCATATTCGTGGTCGGATTAGTATTTTAAATGTTTTGCAGTTATTATCTTGATGTATGGTTTAGGGTCTTTATAATCTAGTGATCTTGGCCAGCCGCTGATTGGATAGTCGACCTATCGATCTATTCAGGATTAGTTGAGG
CTAATGGATGGATGAAAGATGAAAGTCCAGTGGACTTATCCATATATGTATTATATTTGTACTTTGTCCTTTGTATTTTATCTTTTTGTGGGTCATTATTGAGTGTCGGTCAAAAATGATCACCCACCAAAATTTTGTATTCTATATTTGTACATCTAAGAGAATTGGTCT
>TRINITY_DN112726_c0_g1_i3 from sample A1 / Example unspliced isoform:ATTTACTTTTTTCCTTGGATTTTTTTTAATTTTTTTCCTTGGAAAAGCATTTACTATTTTGTGGTAGTTCCGAGTAACCAACATAATTTTATTGTGTAAATTTCTGAACTTAATCTGTGTGAGAGTTTAAGAACCGTCCAAAACATAATTTCCTATACGCCCTTCAGAATTCCTTCATCTTTGGACACGGCGTAGTAAAA
TCCTCCGACCTGTATTCTGATCAGCATTGAACTGTTCGTGAGGGACGGCAGAAATAATAAAACAAAATGCAAAACAGGAAAGGTACTCGGCAGTCGAAATGAAAAGAAATACAGAGGGCTTAAGGTTCAGATGGAATTGCTTCATTCTACCCTTAACTTGGTTTCCCCAAATCCAGTTATCTAGCCCACTTCATCAAATT
GCTACGATTGAGGCCTAATTTATATTGGGCAGCTGATAGAAACACCAAACATACCCCGTGGCCTCTGCATAACGGCAGGACTGAAGGCAGCATGGCGGAGGAAGAGCTGTTTCTGACGCTTCAGTCGCGAGGATGGTATCTCAAAGATGTTACCGTTGTGGAAGGCCTGTTGCAGGAGGTCTCAACGGAGAAATTAGGTC
GCGCGGAATTGGAAAAGATGATCGAGGCGAACCTTCTGGAAATGGATCTGAAGGTGGTGGGGGGTAAATGCTTACCCGATTCAGCTGCTCTTCATCGCGCATCCCGCCTTCAAGGACCAAAGATTTTGCAGATTGTATCCCTAAGGAATATACGCCAGAGCAGTGATAGGGCAATGGTCCCCAGCCAACAGAAGGATGGT
CGTCTCCTACGTATTTGTCTCACTGACGGACACTCAAACATCACAGCAATTGAGTATGGTGGAATACCGTTGATTTCAGAAGATATGGCTCCTGGTACAAAGgtttgttttgagggaattgcttcagtgaagagtggaatattattgctggaaagtcgatccttaaatgtattggggggttttgtgcaatctctttacga
ggaatgggaaatagagcgtaaatattcagtattttctcgttcttcattgaattcatctcaagttccagGCTTATCCGGTCCACCGCCTTTTGAAAGGCTGAACATTGAAACAGCTCCAGTTCGAAGTAGTCATAAGGCAGAATTACAAGTTCACCAGTCATATGGTTCTCGCGGGGTGCTATCTCAAAGAGATAAGCCAA
TAGCGTCAAAGTTGACCAACGAGAACACTGGCACAGATGTTATGATGCAGGGTGCTGCCACTGTGAAGGCTGGTGGAAAACTACTTGATACAAGCACATATCAAATGAAGGATAATGCAGGCCCTTTGAAGAATGGGAATATAACCACGGAACGAGTGAGAATAGGATATGAAGTGTACCAGCCAAAAGCATTCCAGAAC
AAACCAGTAGAGAGTTCACAGTTAGGTGCAAAATCACTCGAAAAGGCTTCTATTTGTTCTGATACAGAAATAAACTTACTCACAGGGAATCAAAAACCAAAGTTTTCTGAAGCAGAAATAAAATCTACTCAAGTTAAAACTAACAATATGCAGGCTGAGTTGAGAAAAAATGAGATTCTTGAAGGAGGGCAACCTGATTC
AATAATTCGCAAAATGAATTTGGGTGCTGAGGCAGTACCAATTCAAAATCAGGCTGCCTCGCAAAAGCTTCTAAAGAAAATGAGTGATAAAGGTAGGGAACATGGGGAATTCAAGCATGGTAGATCTGGAAAGTTTAGAGGAAACCAAGAAGCAACTGCCCTTTTAACCCTGGATGAATGGGAGCTCCAAAAGGGAAAAA
TGAAGGCGACTTCAAGCTGGAGCAATGATGTCTCTCAAGATGCAGAACTAGCTAGACAGCTTCAAAACCAGTTAGATTTAGAAGATTCAAATGCAAAGATGGCACATGAACAGGAAGCAGAAAGAATTCGAATGAGTATCTTCAACTTTGGGAATACAAGTAATAGTAGTGAAAATAGAGGAAGGAAACCGAGAGGACGA
GGTAGGGGTAACAAGCGATTTTAATGGACCATGTATCAAGCCTTTTCTAGCTCTCTGAAAAAAGGAAAAACTAGAGGCATCTCCTGTTTCTGTCACGGAACTTATGTTCTGTTGTATTTATTTCTCACCCATGGTAAATTTCAGAGACAGATGGCTTGCTTAACAGCCAGATGTTTATTCCCAATTCAATCAAAATCACA
GATTTTGTGGTATAATTTTTTCAGTGCATATTCGTGGTCGGATTAGTATTTTAAATGTTTTGCAGTTATTATCTTGATGTATGGTTTAGGGTCTTTATAATCTAGTGATCTTGGCCAGCCGCTGATTGGATAGTCGACCTATCGATCTATTCAGGATTAGTTGAGGCTAATGGATGGATGAAAGATGAAAGTCCAGTGGA
CTTATCCATATATGTATTATATTTGTACTTTGTCCTTTGTATTTTATCTTTTTGTGGGTCATTATTGAGTGTCGGTCAAAAATGATCACCCACCAAAATTTTGTATTCTATATTTGTACATCTAAGAGAATTGGTCT