NA ----> NA
Intron 1 GTATTTAAGA ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.37 | 17 | 38 | 39 |
| A2 | 71.43 | 10 | 26 | 24 |
| A3 | 76 | 12 | 34 | 42 |
| A4 | 57.58 | 14 | 24 | 14 |
| A5 | 77.78 | 7 | 20 | 29 |
| A6 | 74.4 | 32 | 80 | 106 |
| A7 | 79.96 | 49 | 162 | 229 |
| A8 | 68.99 | 40 | 70 | 108 |
| A9 | 72.86 | 38 | 97 | 107 |
| A10 | 78.81 | 48 | 168 | 189 |
>TRINITY_DN122862_c0_g2_i4 from sample A3 / Example spliced isoformGCATATTGCCTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCACGATTTCTTCTACCCTCGTCCAGAC
TTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAGACTTGGGTGATAGCACATGTATTTT
TTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGCCATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATCTCTAACTGAAGGGTATTGTAACTAA
ATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGTTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTTGTTTTTTCAACGGGGGATAAGCTGCGATGGCATCTTCTTTGCTGGCCCCAAGGCATCATACCTCCAAGATACTGTAGC
TACTGGTATTGTTTCACGACAAAGTATAGGAGAAAGATGTACAAATATTTCACCTGTGGGCTGAAGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTAGAAAATGCCGAACTCAATGAATAGATTTAAGCACTATAATGGGATCTCTTTCTTACACGTAGATGCTGGGGTCTCCAAGACATATTT
TGGCCCAGCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGACCATTTTGAGGGTTAAAATGGAAGCAATTTCTTGGCACGACACCTCAAATAAACAGTAGATGTCACGCCTGAGAAGAGGCTGAGAAAGACATTCGAAGAGGAGACATTGTTGCAGCGCAAGCCTGGTTTTCCATTTGAGATGCAG
AGTCGGCCTTACTTCCCATTTCTATAAAGCAGGAAATTAGTGGTTATTGCTTGGATAATCTTGTCCCTAAATAGTGTGGGGGTTTGGCGAGGATTTAATGCCATGTATAAGGCTATTGCAGCCACTACTATTTTCCAGACCCTTTGGAATGTCTT
>TRINITY_DN122862_c0_g2_i3 from sample A3 / Example unspliced isoform:GCATATTGCCTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCACGATTTCTTCTACCCTCGTCCAGAC
TTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAGACTTGGGTGATAGCACATGTATTTT
TTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGCCATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATCTCTAACTGAAGGGTATTGTAACTAA
ATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGCTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTTGTTTTTTCAACGGGGGATAAGCTGCGATGGCATCTTCTTTGCTGGCCCCAAGGCATCATACCTCCAAGATACTGTAGC
TACTGGTATTGTTTCACGACAAAGTATAGGAGAAAGATGTACAAATATTTCACCTGTGGGCTGAAGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTAGAAAATGCCGAACTCAATGAATAGATTTAAGCACTATAATGGGATCTCTTTCTTACACGTAGATGCTGGGGTCTCCAAGACATATTT
TGGCCCAGgtatttaagaggatgaatgctgctgttaagggttcgtctatttgttacaaacgcatgcttcaaagattttttaatcattttttgcagCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGACCATTTTGAGGGTTAAAATGGAAGCAATTTCTTGGCACGACACCTCAAATAAACAGTA
GATGTCACGCCTGAGAAGAGGCTGAGAAAGACATTCGAAGAGGAGACATTGTTGCAGCGCAAGCCTGGTTTTCCATTTGAGATGCAGAGTCGGCCTTACTTCCCATTTCTATAAAGCAGGAAATTAGTGGTTATTGCTTGGATAATCTTGTCCCTAAATAGTGTGGGGGTTTGGCGAGGATTTAATGCCATGTATAAGGC
TATTGCAGCCACTACTATTTTCCAGACCCTTTGGAATGTCTTCGGTGTAAAAGCTCAGCAGCTGCTCTTTCATATCTTGTCACCGAAGGCTTGGAGAACAATATTAAGTGGTGGAGTACCTGCATTGGAAAGATAAACAGAAACAAAGATTTCAAAGTGGGAGGCAGTAGAGGGAAAGCCACCTGGAAAAGCATATCTGA
AATATATTCTATCTTCTATCTTTTATTTTAAATAAATTCTGTCATGTAGTGAAATTGCTGCCGGATGTAAAAAGAAGTTATAC
Intron 2 GCTGTGATGG ... TGGCCCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.33 | 34 | 28 | 24 |
| A2 | 37.14 | 22 | 18 | 8 |
| A3 | 54.84 | 21 | 30 | 21 |
| A4 | 37.93 | 36 | 25 | 19 |
| A5 | 42.42 | 19 | 18 | 10 |
| A6 | 45.61 | 65 | 68 | 41 |
| A7 | 42.74 | 134 | 122 | 78 |
| A8 | 39.61 | 77 | 61 | 40 |
| A9 | 45.07 | 78 | 75 | 53 |
| A10 | 41.61 | 127 | 114 | 67 |
>TRINITY_DN134932_c0_g1_i6 from sample A1 / Example spliced isoformGTCCCATTCTCGGCAGTTTGTTTTTGCATATTGCGTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCA
CGATTTCTTCTACCCTCGTCCAGACTTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAG
ACTTGGGTGATAGCACATGTATTTTTTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGACATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATC
TCTAACTGAAGGGTATTGTAACTAAATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGCTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTCGTTTTTTCAACGGGGGATAAGCGTCATACCTCCAAGATACTGTAGCTACTGGT
ATTGTTTCACGACAAAGTATAGGAGAAAGATGTACAAATATTTCACCTGTGGGCTGAAGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTTGAAAATGCCGAACTCAATGAATAGATTTAAGCACTATAATGGGATCTGTTTCTTACACGTAGATGCTGGGGTCTCCAAGACATATTTTGGCCCA
GGTATTTAAGAGGATGAATGCTGCTGTTAAGGGTTCGTCTATTTGTTACAAACGCATGCTTCAAAGATTTTTTAATCATTTTTTGCAGCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGATCATTTTGAGGGTTAAAATGGAAGCAATTTCTTGGCACGACACCTCAAATAAACAGTAGATGTCA
CGCCTGAGAAGAGGCTGAGAAAGACATTCGAAGAGGAGACATTGTTGCAGCGCAAGCCTGGTTTTCCATTTGATATGCAGAGTCGGCCTTACTTCCCATTTCTATAAAGCAGGAAATTAGTGGTTATTGATTGGATAATCTTGTCCCTAAATAGTGTGGGGGGTTTGGCGAGGATTTAATGCCATGTATAAGGCTATTGC
AGCCACTACTATTTTCCAGACCCTTTGGAATGTCTTCGGTGTAAAAGCTCAGCAGCTGCTCTTTCATATCTTGTCACCGAAGGCTTGGAGAACAATATTAAGTGGTGGAGTACCTGCATTGGAAAGATAAACAGAAACAAAGATTTCAAAGTGGGAGGCAGTAGAGGGAAAGCCACCTGGAAAAGCATATCTGAAATATA
TTCTATCTTCTATCTTTTATTTTAAATAAATTCTGTCATGTAGTGAAATTGCTGCCGGATGTAAAAAGAAGTTATACATATCTCTTATTTTCTATTTTGAAAAAATAGGTGGCAGAGTTGTATTGATGATCTGTCACTAAATTTGTAACTATTTTCTGTTAGGATTAGGTCGACTATGAGTCTCAAGACAGCTATATATT
CATTGTAATAGAAGACCTAAGGGTGAGTGAATCATTTGGCTGAAGCCTACCAGATGTTTTTGATATTTCATTGTTAATACATCAGCCGTGTTTGAGGCTGGGTTATTTTG
>TRINITY_DN134932_c0_g1_i5 from sample A1 / Example unspliced isoform:GTCCCATTCTCGGCAGTTTGTTTTTGCATATTGCGTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCA
CGATTTCTTCTACCCTCGTCCAGACTTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAG
ACTTGGGTGATAGCACATGTATTTTTTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGACATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATC
TCTAACTGAAGGGTATTGTAACTAAATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGCTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTCGTTTTTTCAACGGGGGATAAgctgtgatggcatcttctttgttggccccaagG
CGTCATACCTCCAAGATACTGTAGCTACTGGTATTGTTTCACCGACAAAGGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTTGAAAATGCTGAACTAAATGAATAGATTTAAGCACTATAATGGGATCTGTTTCTTACACGTAGATGCTGGGGTCTCCAAGACATATTTTGGCCCAGGTATTTA
AGAGGATGAATGCTGCTGTTAAGGGTTCGTCTATTTGTTACAAACGCATGCTTCAAAGATTTTTTAATCATTTTTTGCAGCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGATCATTTTGAGGGTTAAAATGGAAGCAATTTCTTGGCACGACACCTCAAATAAACAGTAGAT
Intron 3 GCTGCGATGG ... TGGCCCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.31 | 33.7 | 38.4 | 45 |
| A2 | 55.35 | 20.9 | 26.8 | 25 |
| A3 | 65.14 | 20.6 | 39 | 38 |
| A4 | 56.56 | 35.8 | 40.2 | 53 |
| A5 | 56.13 | 19.2 | 25 | 24 |
| A6 | 55.26 | 63.8 | 82.3 | 75.3 |
| A7 | 51.15 | 133.5 | 140.8 | 138.8 |
| A8 | 52.01 | 76.6 | 78.2 | 87.8 |
| A9 | 55.77 | 77.3 | 97.7 | 97.2 |
| A10 | 55.07 | 124.2 | 142.5 | 161.9 |
>TRINITY_DN134932_c0_g1_i6 from sample A1 / Example spliced isoformGTCCCATTCTCGGCAGTTTGTTTTTGCATATTGCGTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCA
CGATTTCTTCTACCCTCGTCCAGACTTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAG
ACTTGGGTGATAGCACATGTATTTTTTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGACATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATC
TCTAACTGAAGGGTATTGTAACTAAATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGCTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTCGTTTTTTCAACGGGGGATAAGCGTCATACCTCCAAGATACTGTAGCTACTGGT
ATTGTTTCACGACAAAGTATAGGAGAAAGATGTACAAATATTTCACCTGTGGGCTGAAGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTTGAAAATGCCGAACTCAATGAATAGATTTAAGCACTATAATGGGATCTGTTTCTTACACGTAGATGCTGGGGTCTCCAAGACATATTTTGGCCCA
GGTATTTAAGAGGATGAATGCTGCTGTTAAGGGTTCGTCTATTTGTTACAAACGCATGCTTCAAAGATTTTTTAATCATTTTTTGCAGCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGATCATTTTGAGGGTTAAAATGGAAGCAATTTCTTGGCACGACACCTCAAATAAACAGTAGATGTCA
CGCCTGAGAAGAGGCTGAGAAAGACATTCGAAGAGGAGACATTGTTGCAGCGCAAGCCTGGTTTTCCATTTGATATGCAGAGTCGGCCTTACTTCCCATTTCTATAAAGCAGGAAATTAGTGGTTATTGATTGGATAATCTTGTCCCTAAATAGTGTGGGGGGTTTGGCGAGGATTTAATGCCATGTATAAGGCTATTGC
AGCCACTACTATTTTCCAGACCCTTTGGAATGTCTTCGGTGTAAAAGCTCAGCAGCTGCTCTTTCATATCTTGTCACCGAAGGCTTGGAGAACAATATTAAGTGGTGGAGTACCTGCATTGGAAAGATAAACAGAAACAAAGATTTCAAAGTGGGAGGCAGTAGAGGGAAAGCCACCTGGAAAAGCATATCTGAAATATA
TTCTATCTTCTATCTTTTATTTTAAATAAATTCTGTCATGTAGTGAAATTGCTGCCGGATGTAAAAAGAAGTTATACATATCTCTTATTTTCTATTTTGAAAAAATAGGTGGCAGAGTTGTATTGATGATCTGTCACTAAATTTGTAACTATTTTCTGTTAGGATTAGGTCGACTATGAGTCTCAAGACAGCTATATATT
CATTGTAATAGAAGACCTAAGGGTGAGTGAATCATTTGGCTGAAGCCTACCAGATGTTTTTGATATTTCATTGTTAATACATCAGCCGTGTTTGAGGCTGGGTTATTTTG
>TRINITY_DN134932_c0_g1_i4 from sample A1 / Example unspliced isoform:GTCCCATTCTCGGCAGTTTGTTTTTGCATATTGCGTGAGTGTCAAACTCCCAAACCCTAACGCAAATTGTTAAGAAACGCCTTGTATCTGCTGCGGTGACAGTTTCTTTCAAGATTTATCTACCATATACTTTGGAGCTCGTGGATCCCAAGGCGTGGGTAACAGCACCTGCACATGAATCCGGGCGACCCTTAAATCCA
CGATTTCTTCTACCCTCGTCCAGACTTGACCTCTTACATCCAAAAAATTGGTGACGCAGCCATTTTCCTGAAGCAGATGGCAGAAGAAATAAGTTTGGGGTCTTACTATTTGGGATCGTGGTCTGAATATTGACGCCGGCATATTATGTGTTGGGCCTGCACATTACAAGCTATATATTCCAGAGCTCTTATAGCTCGAG
ACTTGGGTGATAGCACATGTATTTTTTCATTTCAAACGAAGGAGAAGAGGGTAGCTCGTCAATGGAAGATGGCAGGTTTCTTGCCATTCGATGCAGCCACTCTCTCATTTCTTTATAATCTTGGGACATGCCATTATCGACGCTGACATAGTCAAAACCCTTGGGTTTCTCAAGATGGCCAGAGGTGGCATATCTAAATC
TCTAACTGAAGGGTATTGTAACTAAATGCTAGCAAGGAATTGGAGACAGAGCCGAGGGTTCCTCAAGAGCGAAAACGCTGGGTTCGTCAAGACGATACCAACCAAACAAATGGGAGTGGAAAACCTTCGCAGGTATCTATGTGTTTCGTTTTTTCAACGGGGGATAAgctgcgatggtatcttctttgctggccccaagG
CGTCATACCTCCAAGATACTGTAGCTACTGGTATTGTTTCACGACAAAGTATAGGAGAAAGATGTACAAATATTTCACCTGTGGGCTGAAGGCAAATGGGTTTGGCTCCATCCGGAATTTGATGTTGTTTGCTAGTTTGAAAATGCCGAACTCAATGAATAGATTTAAGCACTATAATGGGATCTGTTTCTTACACGTAG
ATGCTGGGGTCTCCAAGACATATTTTGGCCCAGGTATTTAAGAGGATGAATGCTGCTGTTAAGGGTTCGTCTATTTGTTACAAACGCATGCTTCAAAGATTTTTTAATCATTTTTTGCAGCTGTTATCACACCTCTTGATATAATACTCATCAAAGATTGGAGAAGATCATTTTGAGGGTTAAAATGGAAGCAATTTCTT
GGCACGACACCTCAAATAAACAGTAGATGTCACGCCTGAGAAGAGGCTGAGAAAGACATTCGAAGAGGAGACATTGTTGCAGCGCAAGCCTGGTTTTCCATTTGATATGCAGAGTCGGCCTTACTTCCCATTTCTATAAAGCAGGAAATTAGTGGTTATTGATTGGATAATCTTGTCCCTAAATAGTGTGGGGGTTTGGC
GAGGATTTAATGCCATGTATAAGGCTATTGCAGCCACTACTATTTTCCAGACCCTTTGGAATGTCTTCGGTGTAAAAGCTCAGCAGCTGCTCTTTCATATCTTGTCACCGAAGGCTTGGAGAACAATATTAAGTGGTGGAGTACCTGCATCTTACCTTGCAAGCTTACATGGATGATGGTATGCCAAGGAATACTCCTAC
CATGCCAAGGAATGCCCCTCTCTTCTTGCAAAACCAAAGAGATAAA