NA ----> NA
Intron 1 GTTAGTATTT ... TCACGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | 33.33 | 12 | 4.7 | 6 |
| A3 | 50 | 2 | 0 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 54 | 7 | 27 |
| A7 | 37.14 | 44 | 2 | 26 |
| A8 | 28.57 | 50 | 2 | 20 |
| A9 | 41.33 | 44 | 2.3 | 31 |
| A10 | 32.43 | 25 | 2.7 | 12 |
>TRINITY_DN38647_c0_g1_i1 from sample A6 / Example spliced isoformAATGTGTTCTATCCCGAAGTATAAGCTGTCCACATAACTTGAGGCGAGGGGCAAGGCGCCCGTCGAAATCTCAACCGTCTGTCAACAAAAGGCGTCGGTGGTCACGCACCTTAGAACGTGCGCCCGTCCGCCGGCGCGGGCATCCCTGGCCGAAAGGAATGAATCCGCCTTCGAAATTCCGGAAGAGTAAAGAACCCAAA
TTCTCACAACTTCCTTGTAATTCAAGCCGAAGCGAGCTCTTTCTCGAGGAATTAAGGCGCACGCGTAAGTCCTAAAATAATACATAGCAAGCCGAAATTTTCATCATTCTCTCCTTTATAGCCCCGGCCGTGCTTCATTCCCTCAGGACCTGAATTTAATTCCAAGGGCTCGAATACAGAAGGTTTAAATTTCTTTGAGA
ACTTCGGAGGACTTTTATAGGGTTTCACAATGCATAGATCTGGTAGCGTGAATCGATCGCTGGACGACTTCTCCGTGGTCTTGCCGACGGTTTCTGTGTCGCCGTCTCCGGTCAAAGGATCTTCGATTCACAGAAGCTATAGCGCGGCGGCCGTCGATTTGCTTCCCAGATATATGGACTCTGCGGAGGATCACGTGAAG
AAGCAGCCGAGGTTTAGGGCTGAGCATGCCGTGCATTTGATTCCCGTCGTGCTTTTTCTCTGCGGATTGGTACTGTGGTTTGCAGGTGAAAGATTGACATGAAATGGTTACATGAAGATGTTACGTTTGTGAGTCCTCATGAGAAAGACAATGGTTTCAGATAGTGGGAGCTTGAATGTTGAAGAAGATATTAACGGAAA
ACAACGTTTATAGGAGGTGGTTTTATGGTTTCAAGGGGTTGCGAAGTAGTCACATTATGTATTATGTATTGATGTAGAACCAAAATTTATTAATTTTTTCGTGTGTATCAAAGGTATATAGGAGATGGTTTTACTAAAGGGTTCGCAAAGGATTCATATTACTATTAAGGTTGAATAAAAATT
>TRINITY_DN38647_c0_g1_i3 from sample A6 / Example unspliced isoform:AATGTGTTCTATCCCGAAGTATAAGCTGTCCACATAACTTGAGGCGAGGGGCAAGGCGCCCGTCGAAATCTCAACCGTCTGTCAACAAAAGGCGTCGGTGGTCACGCACCTTAGAACGTGCGCCCGTCCGCCGGCGCGGGCATCCCTGGCCGAAAGGAATGAATCCGCCTTCGAAATTCCGGAAGAGTAAAGAACCCAAA
TTCTCACAACTTCCTTGTAATTCAAGCCGAAGCGAGCTCTTTCTCGAGGAATTAAGGCGCACGCGTAAGTCCTAAAATAATACATAGCAAGCCGAAATTTTCATCATTCTCTCCTTTATAGCCCCGGCCGTGCTTCATTCCCTCAGGACCTGAATTTAATTCCAAGGGCTCGAATACAGAAGGTTTAAATTTCTTTGAGA
ACTTCGGAGGACTTTTATAGGGTTTCACAATGCATAGATCTGGTAGCGTGAATCGATCGCTGGACGACTTCTCCGTGGTCTTGCCGACGGTTTCTGTGTCGCCGTCTCCGGTCAAAGGATCTTCGATTCACAGAAGCTATAGCGCGGCGGCCGTCGATTTGCTTCCCAGATATATGGACTCTGCGGAGGATCACGTGAAG
AAGCAGCCGAGGTTTAGGGCTGAGCATGCCGTGCATTTGATTCCCGTCGTGCTTTTTCTCTGCGGATTGGTACTGTGGTTTGCAGGTGAAAGATTGACATGAAATgttagtattttacattaaatgttaccattttaacagtttgagacagattattttgtttttatttttatggatttcttcgagcttatatagctttc
tgtgtcacggccagGGTTACATGAAGATGTTACGTTTGTGAGTCCTCATGAGAAAGACAATGGTTTCAGATAGTGGGAGCTTGAATGTTGAAGAAGATATTAACGGAAAACAACGTTTATAGGAGGTGGTTTTATGGTTTCAAGGGGTTGCGAAGTAGTCACATTATGTATTATGTATTGATGTAGAACCAAAATTTATT
AATTTTTTCGTGTGTATCAAAGGTATATAGGAGATGGTTTTACTAAAGGGTTCGCAAAGGATTCATATTACTATTAAGGTTGAATAAAAATT
Intron 2 GTGAAAGATT ... TCACGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 2 | 0 | 0 |
| A2 | 30 | 14 | 8 | 6 |
| A3 | 50 | 2 | 0 | 2 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 32.41 | 57.7 | 13 | 27.7 |
| A7 | 37.14 | 44 | 3 | 26 |
| A8 | 28.17 | 51 | 5 | 20 |
| A9 | 40.26 | 46 | 3 | 31 |
| A10 | 30.77 | 27 | 6 | 12 |
>TRINITY_DN68952_c0_g1_i2 from sample A2 / Example spliced isoformCAAAAGGCGTCGGTGGTCACGCACCTTAGAACGTGCGCCCGTCCGCCGGCGCGGGCATCCCTGGCCGAAAGGAATGAATCCGCCTTCGAAATTCCGGAAGAGTAAAGAACCCAAATTCTCACAACTTCCTTGTAATTCAAGCCGAAGCGATCTCTTTCTCGAGGAATTAAGGCGCACGCGTAAGTCCTAAAATAATACAT
AGCAAGCCGAAATTTTCATCATTCTCTCCTTTATAGCCCCGGCCGTGCTTCATTCCCTCAGGACCTGAATTTAATTCCAAGGGCTCGAATACAGAAGGTTTTAATTTCTTTGACAACTTCGGAGGACTTTTATAGGGTTTCACAATGCATAGATCTGGTAGCGTGAATCGATCGCTGGACGACTTCTCCGTGGTCTTGCC
GACGGTTTCTGTGTCGCCGTCTCCGGTCAAAGGATCTTCGATTCACAGAAGCTATAGCGCGGCGGCCGTCGATTTGCTTCCCAGATATATGGACTCTGCGGAGGATCACGTGAAGAAGCAGCCGAGGTTTAGGGCTGAGCATGCCGTGCATTTGATTCCCGTCGTGCTTTTTCTCTGCGGATTGGTACTGTGGTTTGCAG
GGTTACATGAAGATGTTACGTTTGTGAGTCCTCATGAGAAAGACAATGGTTTCAGATAGTGGGAGCTTGAATGTTGAAGAAGATATTAACGGAAAACAACGTTTATAGGAGGTGGTTTTATGGTTTCAACGG
>TRINITY_DN68952_c0_g1_i3 from sample A2 / Example unspliced isoform:CAAAAGGCGTCGGTGGTCACGCACCTTAGAACGTGCGCCCGTCCGCCGGCGCGGGCATCCCTGGCCGAAAGGAATGAATCCGCCTTCGAAATTCCGGAAGAGTAAAGAACCCAAATTCTCACAACTTCCTTGTAATTCAAGCCGAAGCGATCTCTTTCTCGAGGAATTAAGGCGCACGCGTAAGTCCTAAAATAATACAT
AGCAAGCCGAAATTTTCATCATTCTCTCCTTTATAGCCCCGGCCGTGCTTCATTCCCTCAGGACCTGAATTTAATTCCAAGGGCTCGAATACAGAAGGTTTTAATTTCTTTGACAACTTCGGAGGACTTTTATAGGGTTTCACAATGCATAGATCTGGTAGCGTGAATCGATCGCTGGACGACTTCTCCGTGGTCTTGCC
GACGGTTTCTGTGTCGCCGTCTCCGGTCAAAGGATCTTCGATTCACAGAAGCTATAGCGCGGCGGCCGTCGATTTGCTTCCCAGATATATGGACTCTGCGGAGGATCACGTGAAGAAGCAGCCGAGGTTTAGGGCTGAGCATGCCGTGCATTTGATTCCCGTCGTGCTTTTTCTCTGCGGATTGGTACTGTGGTTTGCAG
gtgaaagattgacatgaaatgttagtattttacattaaatgttaccattttaacagtttgagacagattattttgtttttatttttatggatttcttcgagcttatatagctttctgtgtcacggccagGGTTACATGAAGATGTTACGTTTGTGAGTCCTCATGAGAAAGACAATGGTTTCAGATAGTGGGAGCTTGAA
TGTTGAAGAAGATATTAACGGAAAACAACGTTTATAGGAGGTGGTTTTATGGTTTCAACGG