sp|Q8LD26|DRMH3_ARATH ----> Dormancy-associated protein homolog 3

Intron 1 GTGAGTCTTT ... AACATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.49	357	11	92
A2	11.44	271	7	35
A3	18.94	458	11	107
A4	15.23	256	7	46
A5	15.06	220	9	39
A6	15.12	2055	20	366
A7	15.37	1988	15	361
A8	16.35	1878	19	367
A9	16.85	2344	25	475
A10	16.82	1839	24	372

>TRINITY_DN47640_c0_g1_i9 from sample A10 / Example spliced isoform

ATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGGGTAGTTATCGGCTCCTGGGAAAGATG
AGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGGCACTGTTAAATTGTCAATACATTTATAATGACAACTACTTTCTCATGGAAATACAAATCCGAGTTGCACAGACAATTTGTTCGAGGCCGATGTGAATATTTTTATGTAAGTAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCTTATTGGCTAAGA
AGGGATCCATGTCCACGTTGGAAGGGATCCAATTCCTCGTTCAGAGGCTTTCTTCTTCTTTTTCCATTTCCTTCCTACGACATATGGCATTGCATTATAATCATGTCCACCATCTAAAAGGTTGCTGCCTCCACTTCTACGTGCATGGAGTGGATCTTACTGTATAGCCCGTACGTCCTCAGCAATGTAATTATGATATA
TGAGAATGAATAACCAACCTGCAAAAACAAAAGGGATGCGTAATGATTTCTATTCGGCTCTCTTTCCTCTTCAAATATGAGCACCCTGTGCCTGAAAAGGAAAAGAGGTGCTGCATTGTATCATTTGGATGAGGTCGCAGGTCCCTTAAATTTGAATGTATCATTTTGAATTCTGAGGTTCCATGATGATTATGTAAAGC
TTGATAAACATTTCAATTGATTTGGTTAGGAACAAAGCTGTTTCAAGATTCGTACTGAAATAAGTAGCCCGAAATCTAAATTGCTCGCAATCCTGTTCTAAGTATTTGAAATTCGAACAATTGGTTGGGTAGTCTTTGGAAAGTGAGAATTGCTACAGAAATTCGAATTTATCGTTCAAATGAGGAGATTCGAAAGATGG
TCTATAAGTTCGTGGTGTATCAAAGTCTTGATCGACCCCTTCAATCACAAAGAATCGTCACAATTAGGAAATAAAAAACTGACTTGCAAAGCTTTGGGAAATAAAGGGCAATATGAACCATCGGGTCTCCAAGTTTGAGGATCTGTGTTACTAGAGGTCTCAATGCTATATATTTTGCGTGGGATCTCAATAAACAACCT
CCAAATATTGTATACATTGTGTTGGAGGCAATCATGTAACAACAATTAAGAAGCAACTGGTACAATAGCTAAGGCTACATCCAAGAATGATTGACTACTAAACAAGAATATATTAATTGATACATTTATATATTACAATGGCTAAGGCTACATTCAAGAATGATCGGGG

>TRINITY_DN47640_c0_g1_i3 from sample A10 / Example unspliced isoform:

ATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTGTCAGTACCCTTGATTTGTTTTCTATCTGTTTCTGCAGTACTGTGGCATCAATGAATTTATTTATATGGTTTGCCATGAAATTCATCAATTAGAGAACACTACATTTAT
GTTTGTTGGATTTGGAATATTGTGTAACAGTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGgtgagtctttgattcagtcataggtctcatatgaatttgtaatctcaattttatgtttgtttttgtggtgggaactgggaagaaggat
tataaggagaatgctgtagcgatgactgatattcccattcaatataacattgcagGGTAGTTATCGGCTCCTGGGAAAGATGAGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGGCACTGTTAAATTGTCAATACATTTATAATGACAACTACTTTCTCATGGAAATACAAATCCGAGTTGCACAGACAA
TTTGTTCGAGGCCGATGTGAATATTTTTATGTAAGTAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCTTATTGGCTAAGAAGGGATCCATGTCCACGTTGGAAGGGATCCAATTCCTCGTTCAGAGGCTTTCTTCTTCTTTTTCCATTTCCTTCCTACGACATATGGCATTGCATTATAATCATGTCCACCATCTAAA
AGGTTGCTGCCTCCACTTCTACGTGCATGGAGTGGATCTTACTGTATAGCCCGTACGTCCTCAGCAATGTAATTATGATATATGAGAATGAATAACCAACCTGCAAAAACAAAAGGGATGCGTAATGATTTCTATTCGGCTCTCTTTCCTCTTCAAATATGAGCACCCTGTGCCTGAAAAGGAAAAGAGGTGCTGCATTG
TATCATTTGGATGAGGTCGCAGGTCCCTTAAATTTGAATGTATCATTTTGAATTCTGAGGTTCCATGATGATTATGTAAAGCTTGATAAACATTTCAATTGATTTGGTTAGGAACAAAGCTGTTTCAAGATTCGTACTGAAATAAGTAGCCCGAAATCTAAATTGCTCGCAATCCTGTTCTAAGTATTTGAAATTCGAAC
AATTGGTTGGGTAGTCTTTGGAAAGTGAGAATTGCTACAGAAATTCGAATTTATCGTTCAAATGAGGAGATTCGAAAGATGGTCTATAAGTTCGTGGTGTATCAAAGTCTTGATCGACCCCTTCAATCACAAAGAATCGTCACAATTAGGAAATAAAAAACTGACTTGCAAAGCTTTGGGAAATAAAGGGCAATATGAAC
CATCGGGTCTCCAAGTTTGAGGATCTGTGTTACTAGAGGTCTCAATGCTATATATTTTGCGTGGGATCTCAATAAACAACCTCCAAATATTGTATACATTGTGTTGGAGGCAATCATGTAACAACAATTAAGAAGCAACTGGTACAATAGCTAAGGCTACATCCAAGAATGATTGACTACTAAACAAGAATATATTAATT
GATACATTTATATATTACAATGGCTAAGGCTACATTCAAGAATGATCGGGG

Intron 2 GTGAGTCTTT ... AACATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.84	357	11	94
A2	11.48	270	7	35
A3	18.76	459	11	106
A4	14.09	256	7	42
A5	15.38	220	9	40
A6	15.54	2054	20	378
A7	15.51	1983	15	364
A8	16.29	1875	19	365
A9	16.83	2343	25	474
A10	16.67	1839	24	368

>TRINITY_DN47640_c0_g1_i5 from sample A10 / Example spliced isoform

ATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGGGTAGTTATCGGCTCCTGGGAAAGATG
AGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGTCACTGTTAAATTGTCAATACATTTATAATGACAACTACTTTGTCATGGAAATACAAATCCATGTTGCACAGACAGTTTGTTCGAGGCCGATGCGAATATATATTTTATGTAAATAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCCATCTGTGCAG
CTTTTTATAGTGGAGTTACTGTACATGGAGAATGCAAATCCAAGTTGCACTGTTAATTTCTGTCTATGAGGGCACTGTTAATTGCCCGTGCATTGATAACAACAACTGAGGGAAATGCAAATCCAAGTTGTACAGAGAGTTTGCAGAGTTTGTTCGAGGCCGATGCGAATATATTTATTGTAAATAGTTTGAGGGTTAAA
G

>TRINITY_DN47640_c0_g1_i11 from sample A10 / Example unspliced isoform:

ATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTGTCAGTACCCTTGATTTGTTTTCTATCTGTTTCTGCAGTACTGTGGCATCAATGAATTTATTTATATGGTTTGCCATGAAATTCATCAATTAGAGAACACTACATTTAT
GTTTGTTGGATTTGGAATATTGTGTAACAGTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGgtgagtctttgattcagtcataggtctcatatgaatttgtaatctcaattttatgtttgtttttgtggtgggaactgggaagaaggat
tataaggagaatgctgtagcgatgactgatattcccattcataacattgcagGGTAGTTATCGGCTCCTGGGAAAGATGAGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGCACTGTTAAATTGTCAATACATTTATAATGACAACTACTTTGTCATGGAAATACAAATCCATGTTGCACAGACAGTTTG
TTCGAGGCCGATGCGAATATATATTTTATGTAAATAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCCATCTGTGCAGCTTTTTATAGTGGAGTTACTGTACATGGAGAATGCAAATCCAAGTTGCACTGTTAATTTCTGTCTATGAGGGCACTGTTAATTGCCCGTGCATTGATAACAACAACTGAGGGAAATGCAAA
TCCAAGTTGTACAGAGAGTTTGCAGAGTTTGTTCGAGGCCGATGCGAATATATTTATTGTAAATAGTTTGAGGGTTAAAG

Intron 3 GTAATCCTAA ... TTCAGTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.19	249.5	315.5	299
A2	51.62	236.5	263.5	241
A3	50.94	327	352	327
A4	48	232	225	203
A5	52.01	149.5	171	153
A6	50.82	1165	1222	1186
A7	46.4	1419.5	1221	1237
A8	49.2	1074.5	1022.5	1058.5
A9	52.82	1426.5	1648	1546
A10	49.02	1464.5	1411.5	1405.5

>TRINITY_DN109938_c0_g1_i5 from sample A5 / Example spliced isoform

CATTTCGATTCCATTCAAAGACGATTTGGGTATACCAAATTTCTGAACAGAACTATCTGAAGCAGTAACTACAATACAATGGGGTTGTTGGATAAGCTGTGGGACGATACTTTGGCTGGTCCTCGCCCTGAGACTGGCCTCGGTAAACTCAGGAAGACTGAGGCCGAAAAGGGTTTAAGCCAGTTGAGGGAACGCAAGGT
GAATGGAGAATTAATCCAGCGATCGAATGATGAGATGAAGCAAGAAAAGCAGGGCATCACCATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTA
ATGACGACCCCAAAAGCCCGACGGTTTATGACTGGGTAGTTATCGGCTCCTGGGAAAGATGAGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGGCACTGTTAAATTGTCCATACATTTATAATGACAACTACTTTCTCATGGAAATACAAATCCGAGTTGCACAGACAATTTGTTCGAGGCCGATGTGAA
TATTTTTATGTAAGTAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCTTATTGGCTAAGAAGGGATCCATGTCCACGTTGGAAGGGATCCAATTCCTCGTTCAGAGGCTTTCTTCTTCTTTTTCCATTTCCTTCCTACGACATATGGCATTGCATTATAATCATGTCCACCATCTAAAAGGTTGCTGCCTCCACTTCTA
CGTGCATGGAGTGGATCTTACTGTATAGCCCGTACGTCCTCAGCAATGTAATTATGATATATGAGAATGAATAACCAACCTGCAAAAACAAAAGGGATGCGTAATGATTTCTATTCGGCTCTCTTTCCTCTTCAAATATGAGCACCCTGTGCCTGAAAAGGAAAAGAGGTGCTGCATTGTATCATTTGGATGAGGTCGCA
GGTCCCTTAAATTTGATTGTATCATTTTGAATTCTGAGGTTCCATGATGATTATGTAAAGCTTGATAAACATTTCAATTGATTTGGTTAGGGACAAAGCTGTTTCAAGATTCGTACTGAAATAAGTAGCCCAAAATCTAAATTGCTCGCAATCCTGTTCTAAGTAATTGAAATTTGAAATTCGAACAATTGGTTGGGTAG
TCTTTGGAAAGTGAGAATTGCTACAGAAATTCGAATTAATCGTTCAAATGAGGAGATTCGAAAGATGGTCTATAAGTTCGTGGTGT

>TRINITY_DN109938_c0_g1_i13 from sample A5 / Example unspliced isoform:

CATTTCGATTCCATTCAAAGACGATTTGGGTATACCAAATTTCTAAACAGAACTCTCTGAAGCAATGGGGTTGTTGGATAAGCTGTGGGACGATACTTTGGCTGGTCCTCGCCCTGAGACTGGCCTCGGTAAACTCAGGAAGACTGgtaatcctaattcagccatggcaacccacttcagtccagAGGCCGAAAAGGGTT
TAAGCCAGTTGAGGGAACGCAAGGTGAATGGAGAATTAATCCAGCGATCGAATGATGAGATGAAGCAAGAAAAGCAGGGCATCACCATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTTGACACCACGAGGAAGAGAGAAT
CCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGGGTAGTTATCGGCTCCTGGGAAAGATGAGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGGCACTGTTAAATTGTCCATACATTTATAATGACAACTACTTTCTCATGGAAATACAAATCCGAGTTGCACAG
ACAATTTGTTCGAGGCCGATGTGAATATTTTTATGTAAGTAGTTTGAGGGTTAAAGATTGTTCAGCGCTGGTCTTATTGGCTAAGAAGGGATCCATGTCCACGTTGGAAGGGATCCAATTCCTCGTTCAGAGGCTTTCTTCTTCTTTTTCCATTTCCTTCCTACGACATATGGCATTGCATTATAATCATGTCCACCATC
TAAAAGGTTGCTGCCTCCACTTCTACGTGCATGGAGTGGATCTTACTGTATAGCCCGTACGTCCTCAGCAATGTAATTATGATATATGAGAATGAATAACCAACCTGCAAAAACAAAAGGGATGCGTAATGATTTCTATTCGGCTCTCTTTCCTCTTCAAATATGAGCACCCTGTGCCTGAAAAGGAAAAGAGGTGCTGC
ATTGTATCATTTGGATGAGGTCGCAGGTCCCTTAAATTTGATTGTATCATTTTGAATTCTGAGGTTCCATGATGATTATGTAAAGCTTGATAAACATTTCAATTGATTTGGTTAGGGACAAAGCTGTTTCAAGATTCGTACTGAAATAAGTAGCCCAAAATCTAAATTGCTCGCAATCCTGTTCTAAGTAATTGAAATTT
GAAATTCGAACAATTGGTTGGGTAGTCTTTGGAAAGTGAGAATTGCTACAGAAATTCGAATTAATCGTTCAAATGAGGAGATTCGAAAGATGGTCTATAAGTTCGTGGTGT

Intron 4 GTCAGTACCC ... TGTGTAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	2.92	443.1	1.8	13
A2	0.61	336.9	0.5	2
A3	2.21	500.8	4.1	11
A4	1.32	307.1	2.8	4
A5	3.53	224.3	1.3	8
A6	0.83	2318.9	6.3	19
A7	0.88	2342.1	13.4	20
A8	1.42	2153.1	16	30
A9	1.24	2563.5	15.8	31
A10	0.86	2144.4	10.8	18

>TRINITY_DN109938_c0_g1_i7 from sample A5 / Example spliced isoform

CATTTCGATTCCATTCAAAGACGATTTGGGTATACCAAATTTCTAAACAGAACTCTCTGAAGCAATGGGGTTGTTGGATAAGCTGTGGGACGATACTTTGGCTGGTCCTCGCCCTGAGACTGGCCTCGGTAAACTCAGGAAGACTGAGGCCGAAAAGGGTTTAAGCCAGTTGAGGGAACGCAAGGTGAATGGAGAATTAA
TCCAGCGATCGAATGATGAGATGAAGCAAGAAAAGCAGGGCATCACCATTATTAAGCCTCCTGGTTATCTTTGTTCACTCTCTCTGGATAGTCCCTCTTCCCCAGCAGCCTCAAGCCCTCCAATCTCACCATCTTCTTTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAAAAGGATATTAATGACGACCCCAAA
AGCCCGACGGTTTATGACTGGGTAGTTATCGGCTCCTGGGAAAGATGAGTAATGGTGACTGAACAGTGTTCATTTTCTATCTGCGGGGGGCACTGTTAAATTGTCCATACATTTATAATGACAACTACTTTCTCATGGAAATACAAATCCGAGTTGCACAGACAATTTGTTCGAGGCCGATGTGAATATTTTTATGTAAA
TAGTTTGAGGGTTAAAGATTGTTCAGCACTGGTCCATCTGTGCAGGTTTTTATAGCGGAGTTACTGTACATGAGCGGAGGAGACAAGTTACGAGTTTATAGCATCTGGCGTCTTATTGGCTAATTGCTTTAACTCCGGCTTACTGCAATACTGGAAGGGATCCATTTCCTCGTTGACAGGCTTTCTTCTTCTTTTTTCAT
TTCCTTCCTACGACACATAGCATTGAATTATAATCATGTCCACCATCAAAAAGGTCGCTGCCTCCACTTCTACGTGCATGGAGTGGATCTTACCGTATAACCCACCACCTCCTTAGGAATGCAGTTATGATATATGAGAATGAATCACCAACCTGCAAAAACAAAAAGGATGTGTATAATGATTTCTATTGGGCCCTCTT
TTCTCTTTAAATACTAGCACCCTGTGCCTGAAAAGGAAAAGAGGTGCTGCATTGTATCATTTGGATGAGGTCGCAGGTCCCTTAAATTTGATTGTATCATTTTGAATTCTGAGGTTCCATGATGATTATGTAAAGCTTGATAAACATTTCAATTGATTTGGTTAGGGACAAAGCTGTTTCAAGATTCGTACTGAAATAAG
TAGCCCAAAATCTAAATTGCTCGCAATCCTGTTCTAAGTAATTGAAATTTGAAATTCGAACAATTGGTTGGGTAGTCTTTGGAAAGTGAGAATTGCTACAGAAATTCGAATTAATCGTTCAAATGAGGAGATTCGAAAGATGGTCTATAAGTTCGTGGTGT

>TRINITY_DN109938_c0_g1_i9 from sample A5 / Example unspliced isoform:

CCCTCCAATCTCACCATCTTCTTgtcagtacccttgatttgttttctatctgtttctgcagtactgtggcatcaatgaatttatttatatggtttgccatgaaattcatcaattagagaacactacatttatgtttgttggatttggaatattgtgtaacagTGACACCACGAGGAAGAGAGAATCCATGGCGAAGCAAA
AAGGATATTAATGACGACCCCAAAAGCCCGACGGTTTATGACTGGTGAGTCTTTGATTCAGTCATAGGTCTCGTATGAATTTGTAATCTCAATTTTATGTTTGTTTTTGTGGTGGGAACTGGGAAGAAGGATTATAAGGAGAATGCTGTAGCGATGACTGTGAGTCTTTGATTCAGTCATAG