sp|Q9FZ33|AXR4_ARATH ----> Protein AUXIN RESPONSE 4
Intron 1 GTAAGTATAT ... CATCTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 6 | 1 | 5 |
| A2 | 27.27 | 8 | 2 | 4 |
| A3 | 60 | 1 | 2 | 1 |
| A4 | 33.33 | 3 | 3 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 25 | 9 | 4 | 2 |
| A7 | 12 | 11 | 0 | 3 |
| A8 | 0 | 18 | 0 | 0 |
| A9 | 12.5 | 21 | 0 | 6 |
| A10 | 0 | 13 | 0 | 0 |
>TRINITY_DN45440_c0_g2_i3 from sample A6 / Example spliced isoformAAGTATCGACGATAAGTATCACAATTCAACCCATGATTCGAACTTTCGGTGATTCTGTTACTGAAGAAATCGCAAATTTTTCCTTCCCTGAAAGAATGGCCACGGCAATGCCAATGCCAATTACAGTGTCATCTCTACACTCGTCTTGTGCAAATTTATCACCAGCACAGCAGAAATTTTGTTCGCTACACTCGTCCTTC
ACAAATTCATCACCATTACAGCATAATTTTTGTTTGAAAGCCAAGACATTGGCAAAGAACAATTTAAGCCATGCCGTCGTGGCCGCAGCCGACAGTGGAGAGAAGAAAGATGAAGTGGAAAATACTTTCAGTCCGTTTAGGTTTGTGACGGACAATCCTTCCAGCAAAGGAGCTATACAATTACCGGATTTACCCGCCAA
CGATGGGAATGTCGGCCAAATGATATCTAGAATAGAGAACAAGGGAAGGGAATATGGCTCTTATATTCAGGTTGGAAAGTTCGAATGGTTTGTTAGAGAAACAGGATCATCAAATACACAGCTTGGCACAATTGTTTTTATACATGGAGCTCCGACTCAATCCTATAGTTATCTAGATGTGATGGCTCAGATGGGAGATG
CTGGTTACCACTGCTACGCACCGGATTGGCTTGGATTTGGTTTCAGTGAAAAACCTCAACCAGGATATGGCTTTCCCTACACAGAGGAGGCATATCATGAAGAATTTGACAAGCTGTTGAGTGAGTTGTGCATTGATTCACCTTTTTTCTTGGTAACTCAGGGCTTTGTCGTAGGCTCTTATGGATTGACATGGGCATTG
AAGAATCCAAACAGTATATCAAAGCTTGCCATCTTAAATAGCCCACTGACTACTTCAGCTTCCATTCCAAATTTGTTCTGGCAGTTAAGGTTTCCATTGCTGGGAGAATTCACAAGTCAAACGCCAACAAATGCTGAGAGATTTGTTGAAGGAGGCAGCCCTTATGTACTTAAAGATGAAAAAGCAGATGTATATCGACT
ACCTTATCTAGGAAGTAGTGGGCCTGGATTTGCTCTTCTTGAGGCTACACGAAAAGCTACTTTCAAGGATATGTCATCACGAATTGCAAGTGGATTTTCTTCTGGAAGGTGGGATATTCCAATATTAGTAGCATGGGGGAAATCAGATAAGTACTTGCGTCAATTAGAAGCAGAAACATTTCAAAAAAATAATGTCAGTG
CCATTCAAGTTGATATGATAGAGGGAGCTGGCCATATGCCACAGGAGGATTGGCCAGAAAAGGTCGTTGCTTCCCTAAAACGTTTCATGAAATAAAGATGAGGTAAGTTAGTCATGATCCTTGCATGAGAATTGACAAATTTCACAGTTTATGAGACACTTCATTATTATCATATCACGACATCAGTTTTTTTTAAGATG
TCATATGTAACGATATGTTATCAAGAGATGTACTCGTGTTACAATTTTCTCTAAAGATGTGCTCCTAGTTATATTTATTGTTATCTAGTTGTTCCTCATTGCTAAGAAGAGGAAAACCACTTCAAATTATCCACTATTTTTAGGAGGGCATCTAGATGATGGTGGAATGGTTTATCCATATTATTATTTATACCACATAT
TGAACTCATGTTTTATCACATGTAGAATTTTGTGGATTACTTATAATCATTCTCTT
>TRINITY_DN45440_c0_g2_i1 from sample A6 / Example unspliced isoform:GTGGGAAAGAAGATAATCGAACGAAGAAATGGAGAAGGAATTAGATGAACTGAAACATTTCAAAAAAATAATGTCAGTGCCATTCAAGTTGATATGATAGAGGGAGCTGGCCATATGCCACAGGAGGATTGgtaagtatatcttgaaagtctttaatttgcttgaaaatattttatttgcaataatggaattatcttggc
tagaaatgttatgattaccgattactgactctatgatatattttgcaaactttaccatctaatgttttgtgtatcatatctacttttcatcttctagGCCAGAAAAGGTCGTTGCTTCCCTAAAACGTTTCATGAAATAAAGATGAGGTAAGTTAGTCATGATCCTTGCATGAGAATTGACAAATTTCACAGTTTATGAG
ACACTTCATTATTATCATATCACGACATCAGTTTTTTTTAAGATGTCATATGTAACGATATGTTATCAAGAGATGTACTCGTGTTACAATTTTCTCTAAAGATGTGCTCCTAGTTATATTTATTGTTATCTAGTTGTTCCTCATTGCTAAGAAGAGGAAAACCACTTCAAATTATCCACTATTTTTTAGGAGGGCATCTA
GATGATGGTGGAATGGTTTATCCATATTATTATTTATACCACATATTGAACTCATGTTTTATCACATGTAGAATTTTGTGGATTACTTATAATCATTCTCTT