sp|Q6AWX7|GRF12_ORYSJ ----> Growth-regulating factor 12
Intron 1 GTTCATATTA ... TTTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.33 | 2 | 8 | 3 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 1 | 3 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 4 | 2 |
| A6 | 100 | 0 | 4 | 1 |
| A7 | 87.5 | 2 | 2 | 26 |
| A8 | 66.04 | 9 | 10 | 25 |
| A9 | 65 | 7 | 12 | 14 |
| A10 | 78.26 | 5 | 21 | 15 |
>TRINITY_DN46379_c0_g3_i4 from sample A10 / Example spliced isoformGCAAAAGGCAATTCCAGATAGGTTTTATAAAAGCTGATGCTGACAGGCAGCAACCCGTGAGCCGCCGGCAGGCTCCGGTGATTTCCGGCGAGGAACCGGCAATCGGCCGTCTCCTGCTCACATGTGCGGGAGAGGGAGAGGTATTATTCGTGTGCTTTGTTCGGTGTTGTTATTCAAGGCTCTTTTGAGTGAGCGCTGTG
GGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTC
ACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGAGGAACGCTTT
GCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGTAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAATATATTTGAGTCAACCATGTTATTGCCCTCTA
TTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAAGAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATAGGGTTAATGTTAACCAAGAACCATGCGTGGC
TTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTGAATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCAAACTGGGTTTCTGTGTTTGCTTCCCCAAACC
CTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGGTGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGCTATAATACCATTAATATATGGACTGATTTTC
TCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGTACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACATGGCATGTATAGGACGGCGGGGAGGGAAAGAA
AGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGG
>TRINITY_DN46379_c0_g3_i3 from sample A10 / Example unspliced isoform:TAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAATATATTTGAGTCAACCATGTTATTGCCCTCTATTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAA
GAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATAGGGTTAATGTTAACCAAGAACCATGCGTGGCTTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTG
AATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCAAACTGGGTTTCTGTGTTTGCTTCCCCAAACCCTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGG
TGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGCTATAATACCATTAATATATGGACTGATTTTCTCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGT
ACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACATGGCATGTATAGgttcatattaatcccgaatctattatgtaatgaagaaacaaatctgaggccgtataaacgattttgggtt
aagatctttccgatttaagaacacctaggttctttgggtgtaataaacaagcatagatctaattctggttttaattagaacttggttcctttcttttggatcaataaaactattgtatattgctgcgagggattgatcgggaaggcaaaatgtagtgatgttttatagaatatgcaaaggaatttttattgtcttaccta
gcgttgcactaaaatccgttttggggtttcgtctccttttgcgcagGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGGTACGCATCCATTTCTAAATCGGCCTCGGCCTAGCGCCATGTTCGTGGTTATAGTATGGCTGATTATTCTACTGTATTTTCACTGTCGTCGTGACGTAAATCCC
TAAGTTCAATGAATTCACTCTGATTCTAATATACATTTTCATGACCTTAAATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGACGGGAGGCCGTGAC
GATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGATGGGCGAAAAGTGAA
TGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAAACGCTAGTAAAGGTAGGATTATGG
TGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAGTTTACTTTTGAATTAGTTTGACTCTCTGGTATGACGCAGAAGCAAGTTCA
ATAGAAAGCTGTAAGAATTCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAATATATGGTGCATTTATATCTGCCAA
TGCACTGTGCAGTTTAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACC
Intron 2 GTAGGGGCAT ... TTTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.17 | 93 | 43.1 | 3 |
| A2 | 18.18 | 87 | 21 | 0 |
| A3 | 22.07 | 74 | 22.6 | 3 |
| A4 | 24.29 | 58 | 21 | 0 |
| A5 | 25.41 | 27 | 10.3 | 2 |
| A6 | 22.56 | 130 | 42.9 | 1 |
| A7 | 23.38 | 441 | 150 | 26 |
| A8 | 23.33 | 463 | 159.4 | 25 |
| A9 | 24.63 | 467 | 174.4 | 15 |
| A10 | 26.83 | 529 | 219.3 | 15 |
>TRINITY_DN46345_c0_g1_i14 from sample A7 / Example spliced isoformGAGCGCTGTGGGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGG
AGCCTTATTCACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGA
GGAACGCTTTGCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAG
AAAGAGATGACGGGAGGCCGTGACGATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCA
GCAGGAAGATGGGCGAAAAGTGAATGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAA
ACGCTAGTAAAGGTAGGATTATGGTGAATAACAAGGCCGGTACATGCAAGCTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAGTTTACTTTTGAATTAGTTTGACTCTC
TGGTATGACGCAGAAGCAAGTTCAATAGAAAGCTGTAAGAATTCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAAT
ATATGGTGCATTTATATCTGCCAATGCACTGTGCAGTTTAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAGGTTTCAAGTTAAGTGTCATGGATATGTTATATGGTACTTGTTTTCCACTTTAGTTAAATGTGTTACTGTC
>TRINITY_DN46345_c0_g1_i1 from sample A7 / Example unspliced isoform:CGCGTCCTGCCCACAACTGGAGGAACGCTTTGCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGgtaggggcatgatctcttcccttttgttttctgtatttcagatataatatgctggaagaaaggtaggcagttagaatgaatccggtgaggtcattctgcaatgtccacatatattataat
atatttgagtcaaccatgttattgccctctattagcctttcatgatttggccacaatggatgagctccaagcattctggaagaaatcaatataatcgatgtggtttgcctatcaagtcgtgcagaatcatgtgtatataatataggcggctgctgcaggcggtatagcagacatctggtgtgtaggccactatgctcata
gggttaatgttaaccaagaaccatgcgtggcttcccctaaaatctccgttatggaaccaacgagatcacagtcctcgactgaatcaataaatgttactgaatctatttcgccgaagaagtgaatagatgtaccgtggaaagtgaggcgcaaatggcagtgtctgccgtatgttctgcgaatgaagggtatgttgggtgca
aactgggtttctgtgtttgcttccccaaaccctcgagttcgttttacacctgcaacacaagacaacacatagatttgttggtggatacatgtaatgtatgtatatcagtattaatatgtagtttcttggacgctgaccagtcgaaatatgtgcccgggaggaaattctaggacatcgacaagtgttgacggttctggtgc
tataataccattaatatatggactgattttctccgatgtattcagaatacgcattgcaattccgaggtcatcattccccgtaccatattatgcaaatgtgagggcatcattccccgtaaaagtcaataagcgctctccagatgcaacagctgccacagtgtgttgataggcgtatagtgcacacgcaagaagcaggacat
ggcatgtataggttcatattaatcccgaatctattatgtaatgaagaaacaaatctgaggccgtataaacgattttgggttaagatctttcctatctcaggatttaagaacacctaggttctttgggtgtaataaacaagcatagatctaattctggttttaattagaacttggttcctttcttttggatcaataaaact
attgtatattgctgcgagggattgatcgggaaggcaaaatgtagtgatgttttatagaatatgcaaaggaatttttattgtcttacctagcgttgcactaaaatccgttttggggtttcgtctccttttgcgcagGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGGTACGCATCCATTTC
TAAATCGGCCTCGGCCTAGCGCCATGTTCGTGGTTATAGTATGGCTGATTATTCTACTGTATTTTCACTGTCGTCGTGACGTAAATCCCTAAGTTCAATGAATTCACTCTGATTCTAATATACATTTTCATGACCTTAAATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATGAATGGGATAACATCGACATTG
GACTCTTTAAACAGAAAGGTACAGATAGAAGCTAGTTTCACCTTTTATTACTGTTTGAAAAAGGTATATTACCAGTGAAATTCCCATGCCTATTACTTGGTATCAACCATTGGCACATTATTTGTTGTCAATTGATTATCAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGAC
GGGAGGCCGTGACGATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGATG
GGCGAAAAGTGAATGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAAACGCTAGTAAA
GGTAGGATTATGGTGAATAACAAGGCCGGTACATGCAAGCTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAATTTACTTTTGAATCAGTTTGACTCTCTGGTATGACGC
AGAAGCAAGTTCAATAGAAAGCTGTAAGAATTCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAATATATATGGTGC
ATTTATATCTGCCAATGCACTGTGCAGTTTAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAGGTTTCAAGTTAAGTGTCATGGATATGTTATATGGTACTTGTTTTCCACTTTAGTTAAATGTGTTACTGTC
Intron 3 GTAGGGGCAT ... GCATGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.41 | 93 | 58 | 2 |
| A2 | 25 | 87 | 29 | 0 |
| A3 | 28.85 | 74 | 30 | 0 |
| A4 | 33.33 | 58 | 29 | 0 |
| A5 | 34.15 | 27 | 14 | 0 |
| A6 | 31.58 | 130 | 60 | 0 |
| A7 | 31.84 | 441 | 206 | 2 |
| A8 | 32.41 | 463 | 222 | 9 |
| A9 | 34.23 | 467 | 243 | 7 |
| A10 | 36.11 | 529 | 299 | 5 |
>TRINITY_DN46379_c0_g3_i2 from sample A10 / Example spliced isoformGCAAAAGGCAATTCCAGATAGGTTTTATAAAAGCTGATGCTGACAGGCAGCAACCCGTGAGCCGCCGGCAGGCTCCGGTGATTTCCGGCGAGGAACCGGCAATCGGCCGTCTCCTGCTCACATGTGCGGGAGAGGGAGAGGTATTATTCGTGTGCTTTGTTCGGTGTTGTTATTCAAGGCTCTTTTGAGTGAGCGCTGTG
GGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTC
ACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGAGGAACGCTTT
GCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGA
CGGGAGGCCGTGACGATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGAT
GGGCGAAAAGTGAATGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAAACGCTAGTAA
AGGTAGGATTATGGTGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAGTTTACTTTTGAATTAGTTTGACTCTCTGGTATGACG
CAGAAGCAAGTTCAATAGAAAGCTGTAAGAATTCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAATATATGGTGCA
TTTATATCTGCCAATGCACTGTGCAGTTTAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACC
>TRINITY_DN46379_c0_g3_i4 from sample A10 / Example unspliced isoform:GCAAAAGGCAATTCCAGATAGGTTTTATAAAAGCTGATGCTGACAGGCAGCAACCCGTGAGCCGCCGGCAGGCTCCGGTGATTTCCGGCGAGGAACCGGCAATCGGCCGTCTCCTGCTCACATGTGCGGGAGAGGGAGAGGTATTATTCGTGTGCTTTGTTCGGTGTTGTTATTCAAGGCTCTTTTGAGTGAGCGCTGTG
GGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTC
ACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGAGGAACGCTTT
GCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGgtaggggcatgatctcttcccttttgttttctgtatttcagatataatatgctggaagaaaggtaggcagttagaatgaatccggtgaggtcattctgcaatgtccacatatattataatatatttgagtcaaccatgttattgccctcta
ttagcctttcatgatttggccacaatggatgagctccaagcattctggaagaaatcaatataatcgatgtggtttgcctatcaagtcgtgcagaatcatgtgtatataatataggcggctgctgcaggcggtatagcagacatctggtgtgtaggccactatgctcatagggttaatgttaaccaagaaccatgcgtggc
ttcccctaaaatctccgttatggaaccaacgagatcacagtcctcgactgaatcaataaatgttactgaatctatttcgccgaagaagtgaatagatgtaccgtggaaagtgaggcgcaaatggcagtgtctgccgtatgttctgcgaatgaagggtatgttgggtgcaaactgggtttctgtgtttgcttccccaaacc
ctcgagttcgttttacacctgcaacacaagacaacacatagatttgttggtggatacatgtaatgtatgtatatcagtattaatatgtagtttcttggacgctgaccagtcgaaatatgtgcccgggaggaaattctaggacatcgacaagtgttgacggttctggtgctataataccattaatatatggactgattttc
tccgatgtattcagaatacgcattgcaattccgaggtcatcattccccgtaccatattatgcaaatgtgagggcatcattccccgtaaaagtcaataagcgctctccagatgcaacagctgccacagtgtgttgataggcgtatagtgcacacgcaagaagcaggacatggcatgtatagGACGGCGGGGAGGGAAAGAA
AGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGG
Intron 4 GTTCAAAGGA ... ATTTGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.2 | 28 | 0 | 5 |
| A2 | 13.04 | 10 | 2 | 1 |
| A3 | 3.45 | 14 | 0 | 1 |
| A4 | 10 | 9 | 2 | 0 |
| A5 | 0 | 5 | 0 | 0 |
| A6 | 1.54 | 32 | 0 | 1 |
| A7 | 7.19 | 71 | 3 | 8 |
| A8 | 3.23 | 75 | 2 | 3 |
| A9 | 6.82 | 82 | 3 | 9 |
| A10 | 3.76 | 64 | 2 | 3 |
>TRINITY_DN40943_c0_g6_i4 from sample A9 / Example spliced isoformCTCGGGTGAAGAACCGGCGATCAGCCGTCTCCTGCCTACATGTGTGGGAGATGGGAAGGGATTGGTTTACTTCAAGGCTCCTGAGTCTTGACTGAGAGAGAGAGCGCGCATTTGGAGAGTTTTCTCGCGGGTCTGCGAAGCCACCGTGGGGCAGGGAATATCAGTTTATGTGCCCGTGTCTTCGTTTGGGGGAAGGCTGA
GCAGAATAAATATATACACAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTCACATCTTCTTCCCTAATTATTGCCGCCGTCAAAACTGGCCATGGCAATGGTGAGGAAAATGAGTCTCTTCTTCCGCTGGTAGCAGCTGTCATGGACGTCCAGCGGGCTGAGGACAAAGAGGATGAAGGAGATCATGGGATTCATAT
GCGTCCTTCCCAAAACTGGAGGAGCGCTTTGCAGCTCCAACGCAGCGGCGAAGGGAACACTGAAAATCAGGCTTTTGAGGAGGGCGGGGAGGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAGAAATCAATGGGATAACATCGACATTGGACTCTATACACAGAAAGGAACTCAAGAAGCCGTCCTCAAGGCAA
ACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGGAAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGCGTCATGAGGAAAAGAAGCAAAACTGTGATTGGGCATATAAACAAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGG
CTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGATGCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAATGGGCGAGGGTGGCGGTGTTCTCAGCGGACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAG
GAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTGGATCTTATAATGTTCCTACTTAATCTCGATCTTGAATAAGTTGACTGACTGGTCTGAATAAAGTAATGAATAGAAAGCTATAAGAATTCAGAGGCC
AACTGTACCTACAGTTGATGTATAAGATCCAGAATTTGCGAATGTACTGTTAATTTTCCGCAATGATAAACTACGAATTGTACGGTGGTAATGTGTTACTCGAATTTCTTTATTCTCAAATGCTTCGAGTTCCAATCAAATAGATTTAGATAACATCGAAAATTTCTGGCTATAAATGGGTGAATTACACGGGA
>TRINITY_DN40943_c0_g6_i3 from sample A9 / Example unspliced isoform:CTCGGGTGAAGAACCGGCGATCAGCCGTCTCCTGCCTACATGTGTGGGAGATGGGAAGGGATTGGTTTACTTCAAGGCTCCTGAGTCTTGACTGAGAGAGAGAGCGCGCATTTGGAGAGTTTTCTCGCGGGTCTGCGAAGCCACCGTGGGGCAGGGAATATCAGTTTATGTGCCCGTGTCTTCGTTTGGGGGAAGGCTGA
GCAGAATAAATATATACACAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTCACATCTTCTTCCCTAATTATTGCCGCCGTCAAAACTGGCCATGGCAATGGTGAGGAAAATGAGTCTCTTCTTCCGCTGGTAGCAGCTGTCATGGACGTCCAGCGGGCTGAGGACAAAGAGGATGAAGGAGATCATGGGATTCATAT
GCGTCCTTCCCAAAACTGGAGGAGCGCTTTGCAGCTCCAACGCAGCGGCGAAGGGAACACTGAAAATCAGGCTTTTGAGgttcaaaggattgatttcttttaagaatgctgcactagaatccgttttgggtttcgtctcgatttgcccagGAGGGCGGGGAGGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAG
AAATCAATGGGATAACATCGACATTGGACTCTATACACAGAAAGGAACTCAAGAAGCCGTCCTCAAGGCAAACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGGAAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGCGTCATGAGGA
AAAGAAGCAAAACTGTGATTGGGCATATAAACAAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGGCTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGATGCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAATGGGCGAGGG
TGGCGGTGTTCTCAGCGGACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAGGAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTGGATCTTATAATGTTCCTACTTAATC
TCGATCTTGAATAAGTTGACTGACTGGTCTGAATAAAGTAATGAATAGAAAGCTATAAGAATTCAGAGGCCAACTGTACCTACAGTTGATGTATAAGATCCAGAATTTGCGAATGTACTGTTAATTTTCCGCAATGATAAACTACGAATTGTACGGTGGTAATGTGTTACTCGAATTTCTTTATTCTCAAATGCTTCGAG
TTCCAATCAAATAGATTTAGATAACATCGAAAATTTCTGGCTATAAATGGGTGAATTACACGGGA
Intron 5 GTACAGATAG ... GGATTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.53 | 58 | 2 | 1 |
| A2 | 0.89 | 56 | 0 | 1 |
| A3 | 0.71 | 70.5 | 0 | 1 |
| A4 | 1.77 | 28 | 0 | 1 |
| A5 | 7.32 | 19 | 3 | 0 |
| A6 | 4.03 | 72.5 | 0 | 6 |
| A7 | 2.33 | 357 | 9 | 8 |
| A8 | 4.58 | 272.5 | 16 | 10 |
| A9 | 2.46 | 318.5 | 9 | 7 |
| A10 | 3.47 | 390.5 | 19 | 9 |
>TRINITY_DN40943_c0_g6_i4 from sample A9 / Example spliced isoformCTCGGGTGAAGAACCGGCGATCAGCCGTCTCCTGCCTACATGTGTGGGAGATGGGAAGGGATTGGTTTACTTCAAGGCTCCTGAGTCTTGACTGAGAGAGAGAGCGCGCATTTGGAGAGTTTTCTCGCGGGTCTGCGAAGCCACCGTGGGGCAGGGAATATCAGTTTATGTGCCCGTGTCTTCGTTTGGGGGAAGGCTGA
GCAGAATAAATATATACACAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTCACATCTTCTTCCCTAATTATTGCCGCCGTCAAAACTGGCCATGGCAATGGTGAGGAAAATGAGTCTCTTCTTCCGCTGGTAGCAGCTGTCATGGACGTCCAGCGGGCTGAGGACAAAGAGGATGAAGGAGATCATGGGATTCATAT
GCGTCCTTCCCAAAACTGGAGGAGCGCTTTGCAGCTCCAACGCAGCGGCGAAGGGAACACTGAAAATCAGGCTTTTGAGGAGGGCGGGGAGGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAGAAATCAATGGGATAACATCGACATTGGACTCTATACACAGAAAGGAACTCAAGAAGCCGTCCTCAAGGCAA
ACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGGAAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGCGTCATGAGGAAAAGAAGCAAAACTGTGATTGGGCATATAAACAAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGG
CTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGATGCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAATGGGCGAGGGTGGCGGTGTTCTCAGCGGACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAG
GAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTGGATCTTATAATGTTCCTACTTAATCTCGATCTTGAATAAGTTGACTGACTGGTCTGAATAAAGTAATGAATAGAAAGCTATAAGAATTCAGAGGCC
AACTGTACCTACAGTTGATGTATAAGATCCAGAATTTGCGAATGTACTGTTAATTTTCCGCAATGATAAACTACGAATTGTACGGTGGTAATGTGTTACTCGAATTTCTTTATTCTCAAATGCTTCGAGTTCCAATCAAATAGATTTAGATAACATCGAAAATTTCTGGCTATAAATGGGTGAATTACACGGGA
>TRINITY_DN40943_c0_g6_i7 from sample A9 / Example unspliced isoform:ATCAGGCTTTTGAGGAGGGCGGGGAGGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAGGTACGCAATCATGTCTAAATCGGTCTCGCACCATTTTCATGATTGATTATTCCACTGCTTTTGCACTGTCGCCGTGACGTAAATCCCAAGTTCAATGAATTCACCCTAATTCTAATATACATTTCCGTGCCCTTAA
ATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATCAATGGGATAACATCGACATTGGACTCTATACACAGAAAGgtacagatagaagctagttacaccctttattactgtttgaaaatggaatattaccagtgaaattcccttgcctattactatctatcaactgtgcacagttaggatacattatttgttgtca
atggattatcagGAACTCAAGAAGCCGTCCTCAAGGCAAACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGGAAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGCGTCATGAGGAAAAGAAGCAAAACTGTGATTGGGCATATAAAC
AAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGGCTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGATGCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAATGGGCGAGGGTGGCGGTGTTCTCAGCGGACTCTTGTAGGGTA
CTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAGGAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATAACAAGGCCGGTACATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTGGATCTTATAATGTTCCTACTTAATCTCGATCTTGAATAAGTTGACTGACTGGTCTGA
ATAAAGTAATGAATAGAAAGCTATAAGAATTCAGAGGCCAACTGTACCTACAGTTGATGTATAAGATCCAGAATTTGCGAATGTACTGTTAATTTTCCGCAATGATAAACTACGAATTGTACGGTGGTAATGTGTTACTCGAATTTCTTTATTCTCAAATGCTTCGAGTTCCAATCAAATAGATTTAGATAACATCGAAA
ATTTCTGGCTATAAATGGGTGAATTACACGGGA
Intron 6 GTACGCAATC ... ATTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.26 | 81.8 | 2.8 | 15.2 |
| A2 | 4.04 | 69.6 | 0 | 3.6 |
| A3 | 5.74 | 74.6 | 0 | 5.4 |
| A4 | 7.32 | 32.6 | 2 | 3 |
| A5 | 21.66 | 29.2 | 2.4 | 7.8 |
| A6 | 9.1 | 100.8 | 0.6 | 13.2 |
| A7 | 13.16 | 423.6 | 10.4 | 71.4 |
| A8 | 10.94 | 353.8 | 6.2 | 47.4 |
| A9 | 11.04 | 396.4 | 6.6 | 55.4 |
| A10 | 12.73 | 491.4 | 11.2 | 81.8 |
>TRINITY_DN46345_c0_g1_i8 from sample A7 / Example spliced isoformGGAAGGGATTGGTTTACTTCAAGGCTCCTGAGTCTTGACTGAGAGAGAGAGCGCGCATTTGGAGAGTTTTCTCGCGGGTCTGCGAAGCCACCGTGGGGCAGGGAATATCAGTTTATGTGCCCGTGTCTTCGTTTGGGGGAAGGCTGAGCAGAATAAATATATACACAGATGAGGATCCGGAATCGTTCCGGAGCCTTATT
CACATCTTCTTCCCTAATTATTGCCGCCGTCAAAACTGGCCATGGCAATGGTGAGGAAAATGAGTCTCTTCTTCCGCTGGTAGCAGCTGTCATGGACGTCCAGCGGGCTGAGGACAAAGAGGATGAAGGAGATCATGGGATTCATATGCGTCCTTCCCAAAACTGGAGGAGCGCTTTGCAGCTCCAACGCAGCGGCGAAG
GGAACACTGAAAATCAGGCTTTTGAGGAGGGCGGGGAGGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAGAAATGAATGGGATAACATCGACATTGGACTCTATACACAGAAAGGAACTCAAGAAGCCGTCCTCAAGGCAAACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGG
AAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGCGTCATGAGGAAAAGAAGCAAAACTGTGATTGGGCATATAAACAAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGGCTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGAT
GCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAATGGGCGCGGGTGGCGGTGTTCTCAGCGGACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAGGAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATA
ACAAAGCCGGTTCATGCAACTTCAAAGAATTGCGTCTCATAGACGCATCTTGATGTCGATGTTCCAACTTATTCCCGGATCCCGATCATTAGAAGCCGAACTCGTAAATAATTCATTAAACGCTTACTTCTTCATTATTTGACTGGCTGTTGCAAGAATTTATTGACGAATTGTACTTACAATTACAATTGATTCTCTAC
TGATGTAGTTGCCTAAGTACTGTAATGTGAAGTCCATTGGTTGTAGCCTGGGTGGTTGGGAGGAATGTTGTTACCCTCCCCACCCAGGTTCAATTCTTGTAAGTGACATATTGCTCTTGTTGAGCCCA
>TRINITY_DN46345_c0_g1_i4 from sample A7 / Example unspliced isoform:CTTGCATCGGAGCATTGGGGCGTCTGTGAAGCTGGGGAATCAGCGTATGTGACCGTGGCTTGGTTTGCATTGAAGGGTAACTGGATCATTCATACATAGATATGAGGATTCGGAAGCGTTCCGGAGCCTTATTCGCATCTTCCGTCTCATGCGAAACGCCAAGGAGCTCTACTTCCAGTATCGCCATTAACACTGGCGAT
GGCGATGGAAATAGAGGGGAGGAGGAGTTTCTTCTTCCGCTGGTAGCAGCTGTCATGGACGTCCAGCGGGCTGAGGACAAAGAGGATGAAGGAGATCATGGGATTCATATGCGTCCTTCCCAAAACTGGAGGAGCGCTTTGCAGCTCCAACGCAGCGGCGAAGGGAACACTGAAAATCAGGCTTTTGAGGAGGGCGGGGA
GGGGAAGAAAGCAGACTGCAGATGGAAGGGGAGTATGAGgtacgcaatcatgtctaaatcggtctcgcaccattttcatgattgattattccactgcttttgcactgtcgccgtgacgtaaatcccaagttcaatgaattcaccctaattctaatatacatttccgtgcccttaaatatatcgcgatatcttgtgaatct
attttggcagAAATGAATGGGATAACATCGACATTGGACTCTATACACAGAAAGGAACTCAAGAAGCCGTCCTCAAGGCAAACATTTCAAGCAGCGCCGAGAAAGAAATGACGGGAAGCAGTGATGAGGAATGGAAGTTGCCAAAATCAGGTGGTCTTGAAATTGGGACTTTGTGGAGGCGACAGAAAAGTGTGCACGGC
GTCATGAGGAAAAGAAGCAAAACTGTGATTGGGCATATAAACAAATGGAAGCCTGAAACAAAAACCACTGAAAAAGTCAGGCTGGAGACTGATATCTCGCAGGAAGATGGGAGAAAAGTCGATGAGAAAGTGATGCCATCTATTAAGCGTTATAATAATAATAATAACGAAGCAGAAGGATCTCAATGCAGGCGGAGGAA
TGGGCGCGGGTGGCGGTGTTCTCAGCGGACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGCAAGGGCAGGCTTAGGAGTTTAAACGGCAATAATAAAAACGCCAGTGGAGGTAGAGTTATCGTGAATAACAAAGCCGGTTCATGCAACTTCAAAGAATTGCGTCTCATAGACGCATCTTGATGTCGATGTTCCA
ACTTATTCCCGGATCCCGATCATTAGAAGCCGAACTCGTAAATAATTCATTAAACGCTTACTTCTTCATTATTTGACTGGCTGTTGCAAGAATTTATTGACGAATTGTACTTACAATTACAATTGATTCTCTACTGATGTAGTTGCCTAAGTACTGTAATGTGAAGTCCATTGGTTGTAGCCTGGGTGGTTGGGAGGAAT
GTTGTTACCCTCCCCACCCAGGTTCAATTCTTGTAAGTGACATATTGCTCTTGTTGAGCCCA
Intron 7 GTACGCATCC ... ATTTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.22 | 82.2 | 5.2 | 13.8 |
| A2 | 9.96 | 89.2 | 2.8 | 4.6 |
| A3 | 11.43 | 81.5 | 2.2 | 7.8 |
| A4 | 11.54 | 36.9 | 0.2 | 3.7 |
| A5 | 34.74 | 30.2 | 4.9 | 9.5 |
| A6 | 11.39 | 123.8 | 5.2 | 11.8 |
| A7 | 29.02 | 499.7 | 31 | 81.9 |
| A8 | 26.99 | 476 | 48.5 | 74.4 |
| A9 | 24.86 | 513.5 | 24.6 | 66.8 |
| A10 | 26.79 | 582.9 | 50.6 | 82.6 |
>TRINITY_DN102283_c0_g1_i4 from sample A5 / Example spliced isoformCGATTTTGGGTTAAGATCTTTCCTATCTCAGGATTTAAGAACACCTAGGTTCTTTGGGTGTAATAAACAAGCATAGATCTAATTCTGGTTTTAATTAGAACTTGGTTCCTTTCTTTTGGATCAATAAAACTATTGTATATTGCTGCGAGGGATTGATCGGGAAGGCAAAATGTAGTGATGTTTTATAGAATATGCAAAGG
AATTTTTATTGTCTTACCTAGCGTTGCACTAAAATCCGTTTTGGGGTTTCGTCTCCTTTTGCGCAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGG
>TRINITY_DN102283_c0_g1_i3 from sample A5 / Example unspliced isoform:GTGAGCGCTGTGGGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCC
GGAGCCTTATTCACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTG
GAGGAACGCTTTGCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGgtacgcatccatttctaaatcggcctcggcctagcgccatgttcgtggttatagtatggctgattattctactgtattttcactgtcgt
cgtgacgtaaatccctaagttcaatgaattcactctgattctaatatacattttcatgaccttaaatatatcgcgatatcttgtgaatctattttcgcagAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGTACAGATAGAAGC
Intron 8 GTACAGATAG ... TGATTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.81 | 83 | 2 | 9 |
| A2 | 16.8 | 90.3 | 0 | 16 |
| A3 | 17.89 | 99 | 0 | 20 |
| A4 | 19.35 | 40.3 | 0 | 9 |
| A5 | 24.78 | 43.3 | 3 | 14 |
| A6 | 9.97 | 122 | 1 | 12 |
| A7 | 14.42 | 579 | 13 | 91 |
| A8 | 18.12 | 560.7 | 30 | 117 |
| A9 | 14.85 | 618 | 9 | 100 |
| A10 | 13.54 | 674 | 19 | 98 |
>TRINITY_DN46345_c0_g1_i15 from sample A7 / Example spliced isoformTAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAATATATTTGAGTCAACCATGTTATTGCCCTCTATTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAA
GAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATAGGGTTAATGTTAACCAAGAACCATGCGTGGCTTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTG
AATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCAAACTGGGTTTCTGTGTTTGCTTCCCCAAACCCTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGG
TGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGCTATAATACCATTAATATATGGACTGATTTTCTCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGT
ACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACATGGCATGTATAGGTTCATATTAATCCCGAATCTATTATGTAATGAAGAAACAAATCTGAGGCCGTATAAACGATTTTGGGTT
AAGATCTTTCCGATTTAAGAACACCTAGGTTCTTTGGGTGTAATAAACAAGCATAGATCTAATTCTGGTTTTAATTAGAACTTGGTTCCTTTCTTTTGGATCAATAAAACTATTGTATATTGCTGCGAGGGATTGATCGGGAAGGCAAAATGTAGTGATGTTTTATAGAATATGCAAAGGAATTTTTATTGTCTTACCTA
GCGTTGCACTAAAATCCGTTTTGGGGTTTCGTCTCCTTTTGCGCAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGGTACGCATCCATTTCTAAATCGGCCTCGGCCTAGCGCCATGTTCGTGGTTATAGTATGGCTGATTATTCTACTGTATTTTCACTGTCGTCGTGACGTAAATCCC
TAAGTTCAATGAATTCACTCTGATTCTAATATACATTTTCATGACCTTAAATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGACGGGAGGCCGTGAC
GATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGATGGGCGAAAAGTGAA
TGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGG
>TRINITY_DN46345_c0_g1_i1 from sample A7 / Example unspliced isoform:CGCGTCCTGCCCACAACTGGAGGAACGCTTTGCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGTAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAAT
ATATTTGAGTCAACCATGTTATTGCCCTCTATTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAAGAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATA
GGGTTAATGTTAACCAAGAACCATGCGTGGCTTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTGAATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCA
AACTGGGTTTCTGTGTTTGCTTCCCCAAACCCTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGGTGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGC
TATAATACCATTAATATATGGACTGATTTTCTCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGTACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACAT
GGCATGTATAGGTTCATATTAATCCCGAATCTATTATGTAATGAAGAAACAAATCTGAGGCCGTATAAACGATTTTGGGTTAAGATCTTTCCTATCTCAGGATTTAAGAACACCTAGGTTCTTTGGGTGTAATAAACAAGCATAGATCTAATTCTGGTTTTAATTAGAACTTGGTTCCTTTCTTTTGGATCAATAAAACT
ATTGTATATTGCTGCGAGGGATTGATCGGGAAGGCAAAATGTAGTGATGTTTTATAGAATATGCAAAGGAATTTTTATTGTCTTACCTAGCGTTGCACTAAAATCCGTTTTGGGGTTTCGTCTCCTTTTGCGCAGGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGGTACGCATCCATTTC
TAAATCGGCCTCGGCCTAGCGCCATGTTCGTGGTTATAGTATGGCTGATTATTCTACTGTATTTTCACTGTCGTCGTGACGTAAATCCCTAAGTTCAATGAATTCACTCTGATTCTAATATACATTTTCATGACCTTAAATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATGAATGGGATAACATCGACATTG
GACTCTTTAAACAGAAAGgtacagatagaagctagtttcaccttttattactgtttgaaaaaggtatattaccagtgaaattcccatgcctattacttggtatcaaccattggcacattatttgttgtcaattgattatcagGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGAC
GGGAGGCCGTGACGATGAATGGAAGTTGCCAAATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGATG
GGCGAAAAGTGAATGAGAAAGCGATGCCTGATAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAAACGCTAGTAAA
GGTAGGATTATGGTGAATAACAAGGCCGGTACATGCAAGCTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAATTTACTTTTGAATCAGTTTGACTCTCTGGTATGACGC
AGAAGCAAGTTCAATAGAAAGCTGTAAGAATTCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAATATATATGGTGC
ATTTATATCTGCCAATGCACTGTGCAGTTTAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAGGTTTCAAGTTAAGTGTCATGGATATGTTATATGGTACTTGTTTTCCACTTTAGTTAAATGTGTTACTGTC
Intron 9 GTTCATATTA ... TTTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.33 | 2 | 8 | 3 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 1 | 3 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 4 | 2 |
| A6 | 100 | 0 | 4 | 1 |
| A7 | 87.5 | 2 | 2 | 26 |
| A8 | 66.04 | 9 | 10 | 25 |
| A9 | 65.85 | 7 | 12 | 15 |
| A10 | 78.26 | 5 | 21 | 15 |
>TRINITY_DN46379_c0_g3_i4 from sample A10 / Example spliced isoformGCAAAAGGCAATTCCAGATAGGTTTTATAAAAGCTGATGCTGACAGGCAGCAACCCGTGAGCCGCCGGCAGGCTCCGGTGATTTCCGGCGAGGAACCGGCAATCGGCCGTCTCCTGCTCACATGTGCGGGAGAGGGAGAGGTATTATTCGTGTGCTTTGTTCGGTGTTGTTATTCAAGGCTCTTTTGAGTGAGCGCTGTG
GGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTC
ACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGAGGAACGCTTT
GCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGTAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAATATATTTGAGTCAACCATGTTATTGCCCTCTA
TTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAAGAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATAGGGTTAATGTTAACCAAGAACCATGCGTGGC
TTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTGAATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCAAACTGGGTTTCTGTGTTTGCTTCCCCAAACC
CTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGGTGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGCTATAATACCATTAATATATGGACTGATTTTC
TCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGTACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACATGGCATGTATAGGACGGCGGGGAGGGAAAGAA
AGCAGACTGCAGATGGAATGGGAGTACGAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGG
>TRINITY_DN46379_c0_g3_i1 from sample A10 / Example unspliced isoform:GCAAAAGGCAATTCCAGATAGGTTTTATAAAAGCTGATGCTGACAGGCAGCAACCCGTGAGCCGCCGGCAGGCTCCGGTGATTTCCGGCGAGGAACCGGCAATCGGCCGTCTCCTGCTCACATGTGCGGGAGAGGGAGAGGTATTATTCGTGTGCTTTGTTCGGTGTTGTTATTCAAGGCTCTTTTGAGTGAGCGCTGTG
GGTTTTGCGTCGGAGAGAGAGAGAGAGCGCTCTGGGCACTTGGGCAGTCCTCTGGCGGGTCTGCAAAGCCTCCGTGGGTTGGAAAGATCAGCCAATGTGCCCGTGACTTCGTTTGGGGAAGGCTGAGTTGAATAAAGGGCGGCCTGATCAATAAAGTACATACATAGATGAGGATCCGGAATCGTTCCGGAGCCTTATTC
ACATCTACTTCCTGTATTGCCATTAACACTGGCCGCCATGGCAAAGGCGAGGAGGAGTTTCTTCTTCCCCTGGTAGCAGCTGTTATGGACGTCCAGCGGGCCGAGGAAAAAGATGAGGTGGAAGGTGAAGGAGATCATGGCACCCACGCCACCGCTCTTGGGATTCATACGCGTCCTGCCCACAACTGGAGGAACGCTTT
GCAACTCCAACGCGGCGGCGAAGGGAGCACTGAAAGTCAGGCTCTTGAGGTAGGGGCATGATCTCTTCCCTTTTGTTTTCTGTATTTCAGATATAATATGCTGGAAGAAAGGTAGGCAGTTAGAATGAATCCGGTGAGGTCATTCTGCAATGTCCACATATATTATAATATATTTGAGTCAACCATGTTATTGCCCTCTA
TTAGCCTTTCATGATTTGGCCACAATGGATGAGCTCCAAGCATTCTGGAAGAAATCAATATAATCGATGTGGTTTGCCTATCAAGTCGTGCAGAATCATGTGTATATAATATAGGCGGCTGCTGCAGGCGGTATAGCAGACATCTGGTGTGTAGGCCACTATGCTCATAGGGTTAATGTTAACCAAGAACCATGCGTGGC
TTCCCCTAAAATCTCCGTTATGGAACCAACGAGATCACAGTCCTCGACTGAATCAATAAATGTTACTGAATCTATTTCGCCGAAGAAGTGAATAGATGTACCGTGGAAAGTGAGGCGCAAATGGCAGTGTCTGCCGTATGTTCTGCGAATGAAGGGTATGTTGGGTGCAAACTGGGTTTCTGTGTTTGCTTCCCCAAACC
CTCGAGTTCGTTTTACACCTGCAACACAAGACAACACATAGATTTGTTGGTGGATACATGTAATGTATGTATATCAGTATTAATATGTAGTTTCTTGGACGCTGACCAGTCGAAATATGTGCCCGGGAGGAAATTCTAGGACATCGACAAGTGTTGACGGTTCTGGTGCTATAATACCATTAATATATGGACTGATTTTC
TCCGATGTATTCAGAATACGCATTGCAATTCCGAGGTCATCATTCCCCGTACCATATTATGCAAATGTGAGGGCATCATTCCCCGTAAAAGTCAATAAGCGCTCTCCAGATGCAACAGCTGCCACAGTGTGTTGATAGGCGTATAGTGCACACGCAAGAAGCAGGACATGGCATGTATAGgttcatattaatcccgaatc
tattatgtaatgaagaaacaaatctgaggccgtataaacgattttgggttaagatctttcctatctcaggatttaagaacacctaggttctttgggtgtaataaacaagcatagatctaattctggttttaattagaacttggttcctttcttttggatcaataaaactattgtatattgctgcgagggattgatcggga
aggcaaaatgtagtgatgttttatagaatatgcaaaggaatttttattgtcttacctagcgttgcactaaaatccgttttggggtttcgtctccttttgcgcagGACGGCGGGGAGGGAAAGAAAGCAGACTGCAGATGGAATGGGAGTACGAGGTACGCATCCATTTCTAAATCGGCCTCGGCCTAGCGCCATGTTCGT
GGTTATAGTATGGCTGATTATTCTACTGTATTTTCACTGTCGTCGTGACGTAAATCCCTAAGTTCAATGAATTCACTCTGATTCTAATATACATTTTCATGACCTTAAATATATCGCGATATCTTGTGAATCTATTTTCGCAGAAATGAATGGGATAACATCGACATTGGACTCTTTAAACAGAAAGGTACAGATAGAAG
CTAGTTTCACCTTTTATTACTGTTTGAAAAAGGTATATTACCAGTGAAATTCCCATGCCTATTACTTGGTATCAACCATTGGCACATTATTTGTTGTCAATTGATTATCAGGAACTCAAAAAGCCCTCCTCAATGAAAACACTTCAAGCAGCGCCAAGAAAGAGATGACGGGAGGCCGTGACGATGAATGGAAGTTGCCA
AATTCAGGTGATCTTGAAATGGGGACTCTGTGGAGGCAGCAGAAGAGTGTGCACGGAGTCAAGCGGAAAAGAAGTAAAAATGTGACTGGGCATATTAACGAATGGAAGCATGAAACAAATACCACTAAAACAATCAGGCAGGAGACTGATTATATCCAGCAGGAAGATGGGCGAAAAGTGAATGAGAAAGCGATGCCTGA
TAAACGTTATAGCAATAATAACGAAGGAGAAGGCTCTCAGTGCAGGCGGAGGAATGGGCGAGGATGGCGGTGTTCTCAGCGTACTCTTGTAGGGTACTCTCTATGCGAATACCATCTGGGAAAGGGGAGGCTTAGGAGTACAAACGGCAATAAAAAAAACGCTAGTAAAGGTAGGATTATGGTGAATAACAAGGCCGGTA
CATGCAAGTTCAAAGAATTGCGCCTCATAGACGCTTCTTGATCTTGTAATGTTCTAACTTGATCGTTGATCTGGTACTGTTCCAGCTTAATCCTGATCAACAGAAGCCGAATTCATGAATAAATTATAATAGTTTACTTTTGAATTAGTTTGACTCTCTGGTATGACGCAGAAGCAAGTTCAATAGAAAGCTGTAAGAAT
TCATAAACTACTGTACCCACAACTCATGTTTAAACTTTAAAATACTCTCCTGTTGCAGTTGTCTGTGCACTGTTAGTTTTCCGCTATGATTAGTCTTCCTTACTTTAATTCTCAAATATGGTTCATAGACTAGAATATTTTCCCGCCATCGATTAAATATATGGTGCATTTATATCTGCCAATGCACTGTGCAGTTTAAC
TTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACCAACAAACTTGTGGTTAGTTTTAATACC