sp|Q05609|CTR1_ARATH ----> Serine/threonine-protein kinase CTR1
Intron 1 GTACGTTTTG ... TAATGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.21 | 8 | 11.3 | 23 |
| A2 | 68.13 | 4 | 12.3 | 5 |
| A3 | 75 | 1 | 3 | 3 |
| A4 | 63.64 | 4 | 10 | 4 |
| A5 | 48.11 | 4 | 2.7 | 5 |
| A6 | 64.68 | 9 | 10 | 23 |
| A7 | 64.62 | 7 | 10.7 | 15 |
| A8 | 67.32 | 11 | 21.7 | 24 |
| A9 | 74.73 | 4 | 8.7 | 15 |
| A10 | 88.15 | 1 | 8 | 7 |
>TRINITY_DN134138_c3_g1_i2 from sample A1 / Example spliced isoformAGGTGTGTGATTTTGGTCTTTCACGGCTCAAGGCAAACACATTTCTTTCTTCAAAGTCTGCTGCTGGAACTCCTGAATGGATGGCTCCAGAAGTTCTTCGGGATGAGCCATCAAATGAGAAGTCTGATGTCTATAGTTTTGGTGTGATTCTATGGGAGCTTATTACCCTGCAACAACCTTGGAGCGGGTTAAATGCAGCA
CAGGTTGTTGGAGCTGTTGGCTTTCAAAACAGAAGGCTTCAGATTCCAAAAGATGTTAAGCCCGAGATAGCTGCTATAATTGAGTCTTGCTGGGCCAATGATCCACGGAAGCGGCCATCATTTGCAAGTATTATGGAATTGTTGAAGCCTTTAGTAAAACCTCCAACCTCACAACCAATCCGAGGGGTAACGCTGCCGCC
ATCTTGAAAGATGTTCTCATGAAAGATACCAAAAATCTGCTTACGTACTGTCTGAAATTGATGCTTTTGCTGATATTTGTTTTGTGAAGATAACTCCAGTGTACATTACGACTCTTCATAGATCTATAGTGTTTTTGACACAATTGTGGAAGCATACTCTTGAAGCAATAGATTCGAGAGAATTGGTTAGTGCAGCACAG
ATGTGCTTGTTGTACACTGTTCTCTTTGTTAGGAAATGTCTGCCTTTGCAGATGTGGAGTTGCAGGGGGCTTTGAGTGTCATTGCGGTTGACTTTGGGGTTCTGTCTCCTCGTGCTTCAGAGAGGATATTGAACTGCAAAACAACACCCCAGTTGTTTCTTTTGGCAGTATTGATTTTGGATCATTGGCCACATATCTGT
GAGTACAATGTGGTTGTCTTCAACTAACTATTAAATTTGAACAATATAATCATTTACAACTAGAAGAATGTAGAAATCCTTCTAAACATTATGCATTTCTTGAAAGAAATGTTGCCAATGATCCTAGAAAGTACAGTAAAGGGAATACATGTTCATAAGCTAACAACAGCTCCGAATTGAGTTTCTCCAGATGCCCGCAA
TAGTGTTTGTTTATTTGCAGCGCTATAGATGTATGGCA
>TRINITY_DN134138_c3_g1_i4 from sample A1 / Example unspliced isoform:GATCAATCAAATGTGGTCAGCATGTTCTGAACATGTTCATAGTAGAGTCAATACATACATTTTATTCTTTTGTCGTGTGCTCAATCACAGAGTATGCACAAGCCATTTAAATTCCTTTGTGCTTGAACTTTGTTCTTGTATGATCCAATTTTAACTCTTTCTCTTGTCGTAATGCAGATAACTCCAGTGTACATTACGAC
TCTTCATAGATCTATAGTGTTTTTGACACAATTgtacgttttgaggtggatatatattgacgaattgcaatgatctcatagcttaacccagtcgacccaaaaatgtaaaatacatattatattacttattcttttggccttgtgctcattgtaatgtatagGTGGAAGCATACTCTTGAAGCAATAGATTCGAGAGAATT
GGTTAGTGCAGCACAGATGTGCTTGTTGTACACTGTTCTCTTTGTTAGGAAATGTCTGCCTTTGCAGATGTGGAGTTGCAGGGGGCTTTGAGTGTCATTGCGGTTGACTTTGGGGTTCTGTCTCCTCGTGCTTCAGAGAGGATATTGAACTGCAAAACAACACCCCAGTTGTTTCTTTTGGCAGTATTGATTTTGGATCA
TTGGCCACATATCTGTGAGTACAATGTGGTTGTCTTCAACTAACTATTAAATTTGAACAATATAATCATTTACAACTAGAAGAATGTAGAAATCCTTCTAAACATTATGCATTTCTTGAAAGAAATGTTGCCAATGATCCTAGAAAGTACAGTAAAGGGAATACATGTTCATAAGCTAACAACAGCTCCGAATTGAGTTT
CTCCAGATGCCCGCAATAGTGTTTGTTTATTTGCAGCGCTATAGATGTATGGCA
Intron 2 GTATATTACT ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 6 | 1 | 2 |
| A2 | 17.65 | 7 | 3 | 0 |
| A3 | 17.65 | 7 | 3 | 0 |
| A4 | 9.09 | 5 | 0 | 1 |
| A5 | 100 | 0 | 1 | 0 |
| A6 | 20 | 6 | 0 | 3 |
| A7 | 30.43 | 8 | 2 | 5 |
| A8 | 7.69 | 6 | 0 | 1 |
| A9 | 26.32 | 14 | 1 | 9 |
| A10 | 23.08 | 15 | 3 | 6 |
>TRINITY_DN48355_c0_g3_i3 from sample A7 / Example spliced isoformCTGTTTTTGGTTAAATTCCTCCATAATTCTCTATATAGGCGAAGGGGATGAATCATTTGCATCGGCTCAATCCTCCCATTGTTCATCGAGACCTCAAGTCTCCAAATTTGTTGGTTGACAAGACGTGGACAGTTAAGGTGTGTGATTTTGGTCTTTCACGGCTCAAGGCAAACACATTTCTTTCTTCAAAGTCTGCTGCT
GGAACTCCTGAATGGATGGCTCCAGAAGTTCTTCGGGATGAGCCATCAAATGAGAAGTCTGATGTCTATAGTTTTGGTGTGATTCTATGGGAGCTTATTACCCTGCAACAACCTTGGAGCGGGTTAAATGCAGCACAGGTTGTTGGAGCTGTTGGCTTTCAAAACAGAAGGCTTCAGATTCCAAAAGATGTTAAGCCCGA
GATAGCTGCTATAATTGAGTCTTGCTGGGCCAATGATCCACGGAAGCGGCCATCATTTGCAAGTATTATGGAATTGTTGAAGCCTTTAGTAAAACCTCCAACCTCACAACCAATCCGAGGGGTAACGCTGCCGCCATCTTGAAAGATGTTCTCATGAAAGATACCAAAAATCTGCTTACGTACTGTCTGAAATTGATGCT
TTTGCTGATATTTGTTTTGTGAAGATAACTCCAGTGTACATTACGACTCTTCATAGATCTATAGTGTTTTTGACACAATTGTACGTTTTGAGGTGGATATATATTGACGAATTGCAATGATCTCATAGCTTAACCCAGTCGACCCAAAAATGTAAAATACATATTATATTACTTATTCTTTTGGCCTTGTGCTCATTGTA
ATGTATAGGTGGAAGCATACTCTTGAAGCAATAGATTCGAGAGAATTGGTTAGTGCAGCACAGATGTGCTTGTTGTACACTGTTCTCTTTGTTAGGAAATGTCTGCCTTTGCAGATGTGGAGTTGCAGGGGGCTTTGAGTGTCATTGCGGTTGACTTTGGGGTTCTGTCTCCTCGTGCTTCAGAGAGGATATTGAACTGC
AAAACAACACCCCAGTTGTTTCTTTTGGCAGTATTGATTTTGGATCATTGGCCACATATCTGTGAGTACAATGTGGTTGTCTTCAACTAACTATTAAATTTGAACAATATAATCATTTACAACTAGAAGAATGTAGAAATCCTTCTAAACATTATGCATTTCTTGAAAGAAATGTTGCCAATGATCCTAGAAAGTACAGT
AAAGGGAATACATGTTCATAAGCTAACAACAGCTCCGAATTGAGTTTCTCCAGATGCCCGCAATAGTGTTTGTTTATTTGCAGCGCTATAGATATATGGCTAATTTTCTGATAAATTGGCCTATATTTCTAAACTAGAATGATTTATTGCATATGGAGTGTTTTAATTGGCGTTAAATACATCTGGC
>TRINITY_DN48355_c0_g3_i1 from sample A7 / Example unspliced isoform:GGCGAAGGGGATGAATCATTTGCATCGGCTCAATCCTCCCATTGTTCATCGAGACCTCAAGTCTCCAAATTTGTTGGTTGACAAGACGTGGACAGTTAAGGTGTGTGATTTTGGTCTTTCACGGCTCAAGGCAAACACATTTCTTTCTTCAAAGTCTGCTGCTGGAACTCCTGAATGGATGGCTCCAGAAGTTCTTCGGG
ATGAGCCATCAAATGAGAAGTCTGATGTCTATAGTTTTGGTGTGATTCTATGGGAGCTTATTACCCTGCAACAACCTTGGAGCGGGTTAAATGCAGCACAGGTTGTTGGAGCTGTTGGCTTTCAAAACAGAAGGCTTCAGATTCCAAAAGATGTTAAGCCCGAGATAGCTGCTATAATTGAGTCTTGCTGGGCCAAgtat
attactgcctgacaatcgttttcttaaaattctttgcaaatatctggattgttctatgattgttgacatcgtcgtctgatttctttcttgattggtggtttactggtattttattgtgatagattgtacgatgggatctgatatattgttttgcagTGATCCACGGAAGCGGCCATCATTTGCAAGTATTATGGAATTGT
TGAAGCCTTTAGTAAAACCTCCAACCTCACAACCAATCCGAGGGGTAACGCTGCCGCCATCTTGAAAGATGTTCTCATGAAAGATACCAAAAATCTGCTTACGTACTGTCTGAAATTGATGCTTTTGCTGATATTTGTTTTGTGAAGATAACTCCAGTGTACATTACGACTCTTCATAGATCTATAGTGTTTTTGACACA
ATTGTACGTTTTGAGGTGGATATATATTGACGAATTGCAATGATCTCATAGCTTAACCCAGTCGACCCAAAAATGTAAAATACATATTATATTACTTATTCTTTTGGCCTTGTGCTCATTGTAATGTATAGGTGGAAGCATACTCTTGAAGCAATAGATTCGAGAGAATTGGTTAGTGCAGCACAGATGTGCTTGTTGTA
CACTGTTCTCTTTGTTAGGAAATGTCTGCCTTTGCAGATGTGGAGTTGCAGGGGGCTTTGAGTGTCATTGCGGTTGACTTTGGGGTTCTGTCTCCTCGTGCTTCAGAGAGGATATTGAACTGCAAAACAACACCCCAGTTGTTTCTTTTGGCAGTATTGATTTTGGATCATTGGCCACATATCTGTGAGTACAATGTGGT
TGTCTTCAACTAACTATTAAATTTGAACAATATAATCATTTACAACTAGAAGAATGTAGAAATCCTTCTAAACATTATGCATTTCTTGAAAGAAATGTTGCCAATGATCCTAGAAAGTACAGTAAAGGGAATACATGTTCATAAGCTAACAACAGCTCCGAATTGAGTTTCTCCAGATGCCCGCAATAGTGTTTGTTTAT
TTGCAGCGCTATAGATATATGGCTAATTTTCTGATAAATTGGCCTATATTTCTAAACTAGAATGATTTATTGCATATGGAGTGTTTTAATTGGCGTTAAATACATCTGGC