sp|O48593|SYNO_ARATH ----> Asparagine--tRNA ligase, chloroplastic/mitochondrial


Intron 1 GCAAGTGCCT ... AAAATTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A123.13159.54848
A218.33982321
A317.651191932
A412.78991415
A522.45381210
A618.032504862
A716.463636677
A817.783706991
A920.4337088102
A1016.183034770



>TRINITY_DN116102_c3_g2_i4 from sample A1 / Example spliced isoform
AGCCAAACAAGATAAGGGGTTGCGCGGTAGAGGAAGGTGAGCAGCAAGGAATGGCAATGGCAATGGCAGGCTTCACCTCCACCATTTGCCTCGCAGCAACTTCCTCCTCTTCACGCCTTCGCGCCTCTAAAATTAGCAACATCGTCCATCTCCATTTTTTGCACCGTCGCCTCTTCCATGCGAGTTCCTCCGCGCCACTA
AAATTAGCACACTTTTCCAGCGCCCGCTCCCTACGTGGTGCTTCTGGCATCGAGTCGCAGGGATTGAATCCCAAATCTATTTATCGGAGAAGAGCCTGTGCCCGAGCCGATAGCAGTGTCCAGGTTTCTGAAGAGCAGCAATGCGGGTCTTCACCGGCGTCGTCGGGAACCGTAGGGAAATTCAAGAAGAGGCTTCGTAT
TGCTGACATTAAGGGCGGGCCGGACCAAGGGCTGGACCGCATTGGCCAGAGTCTTTCTATACGAGGATGGGTCCGAACCTGCAGAGCTCAAAAGTCTGTGACATTCATAGAGGTGAATGATGGGTCCTGTCTTTCAAACTTGCAGTGTGTGATGGGTTCTGATATTGAGGGATATGACAAGGTTGAGTCTGGCTTGATCA
CAACAGGGGCATCTATCTTTATAGATGGGGTTCTGGTAGCCAGTGCAGGCTCGAAGCAGAAGGTGGAATTGAGGACAATGAAACTCATTTTGATTGGGAGCTGTGATGCTGCCACATTTCCTGTTCAAAAGAAAAAGGCAAGTAGAGAGTATCTGAGAAGTGTAGCACACATGCGGCCTCGGACAAATACATTTGGTGCG
GTTGCCCGAGTAAGAAATGCCCTGGCATATGCTACACACAAGTTTTTCCAGGAGATGGGTTTTGTCTGGGTCGCTAGTCCAATAATCACTGCTTCAGATTGTGAAGGTGCTGGAGAGCAATTTTGTGTTACAACTTTGCTTTCTAGCTCTAAGGAGGATGTGGGCTCTCCAATTAGCATGATCCCTAGCACAAAGGATGG
TTATGTTGATTGGGCACAGGATTTTTTTGGAAAACCAGCATTCTTGACGGTGTCTGGACAGCTCAATGGAGAAGCCTATGCATGTGCTCTTTCGGATGTATACACCTTTGGTCCCACATTTCGAGCAGAACATTCAAACACATCACGTCATTTAGCTGAGTTCTGGATGATTGAACCAGAGCTTGCTTTTGCCAATCTGA
ATGATGACATGGCTTGTGCAACTGCCTATCTCCAGTATGTCGTGAGGTTCATTCTGGATAATTGCAAAGAAGATATGGAATTCTTCAATACCTGGATTGAAAAGGGGATAATTACACGTTTAAGTAATGTAGCAGAAAAGGAATTTGTGCAATTGACATATACGGATGCTGTTGAACTGCTTTTGAAAGCAAAGAAAAAT
TTTGAATTCCCGGTAACATGGGGATGTGATTTGCAAAGTGAGCATGAGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAAAGATTATCCCAAAGATATAAAGGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGATGTTTTAGTTCCAAGGGTGGGTGAGCTCATTGG
TGGAAGCCAACGTGAGGAACGCCTTGAATTACTGGAGAATAGAATGGAAGAGTTGGGGCTCAGAAAAGAAAGTTACTGGTGGTATCTTGATTTACGACGTTATGGTTCAGTTCCTCATGCTGGGTTTGGATTGGGTTTTGAGAGGCTCGTCCAGTTTGCAACTGGAGTGGAGAACATCCGAGATGTTATACCATTTCCAA
GGACTCCTGGCTCTGCAGAATTTTAATTTCAAATGAAATTTTTTGTAGTTGAAATTAAATATGATTGCATATGGTGATGCTGTTGATTTTTTGTTGTTGTTGCAAAATTTAAACTTTTCTTTGCGCAAGAAATCAGGAGCTGTTCCCACTCTTTTTCTTTTTGTGCAGATGAAGTCCCAGGGTTGTGTAAAGTAAAAAAA
ATACTGACATGCTTTCAAAGAGTTTCTTTGAAAAGGAGAGAGAGATTAGAAGTCAATTGTTGATCAACATCTCTAGCCGTTGTCCTTAACCAATATGATATGGAATTTGAGATCCATTTGAATATAGATTTTTGGGGCAGAAATCACCCATTCTCTTAATACTTCAATAAAAATGTTTTGTTACACTCCCGTGACTGTTT
GACTGGATAACTATCACTCTGCTAGCCAACTACACCAACTAATTATTAATTTGTTGATGCATTTTTTTAGTGGTCATTGTGCATAGTAGATGCTTTTAGATCAAGTAAGAAATGAGTCAAAATGACTTATATAGTGTTTCATCTCCCATGAGACTCTGCCTTTGAGACTCTGTCTTTGAGCTCTTCTATGGGACTTGAGA
TGTATCAGAATCATATTGATCATTTTTTAATAATGAGTTGAAGTGATTGGTCTCTCATTTTGTCGTGTATTATTGTCCATGTTTTTCTTTTGTGTAAATTTGATATCATATCAGAGCCATGGTGACAGAACCAAGAAGGCGAAAGTGGGTAAGGCCTAGGGACTCCGTTGATCCATGACTGTACAAAGGACTGTTCACAC
ACAAATTGGAGAGAGGAACAAGCCAAGTTCTATATCAATGGTAAAGGTTGAGTCTTGAGTGAACAATGCCTCTCATCCAGCAGGTGAGTCAATGGTCAAACAGAGGGTTGGTAGTATGATTTGTTCTACATCAGCCTTGCCGAAAAAGACTATTTCCAATTGATGCTTGAAGACATCTCTTTGAAGTGGAG


>TRINITY_DN116102_c3_g2_i7 from sample A1 / Example unspliced isoform:
AGCCAAACAAGATAAGGGGTTGCGCGGTAGAGGAAGGTGAGCAGCAAGGAATGGCAATGGCAATGGCAGGCTTCACCTCCACCATTTGCCTCGCAGCAACTTCCTCCTCTTCACGCCTTCGCGCCTCTAAAATTAGCAACATCGTCCATCTCCATTTTTTGCACCGTCGCCTCTTCCATGCGAGTTCCTCCGCGCCACTA
AAATTAGCACACTTTTCCAGCGCCCGCTCCCTACGTGGTGCTTCTGGCATCGAGTCGCAGGGATTGAATCCCAAATCTATTTATCGGAGAAGAGCCTGTGCCCGAGCCGATAGCAGTGTCCAGGTTTCTGAAGAGCAGCAATGCGGGTCTTCACCGGCGTCGTCGGGAACCGTAGGGAAATTCAAGAAGAGGCTTCGTAT
TGCTGACATTAAGGGCGGGCCGGACCAAGGGCTGGACCGCATTGGCCAGAGTCTTTCTATACGAGGATGGGTCCGAACCTGCAGAGCTCAAAAGTCTGTGACATTCATAGAGGTGAATGATGGGTCCTGTCTTTCAAACTTGCAGTGTGTGATGGGTTCTGATATTGAGGGATATGACAAGGTTGAGTCTGGCTTGATCA
CAACAGGGGCATCTATCTTTATAGATGGGGTTCTGGTAGCCAGTGCAGGCTCGAAGCAGAAGGTGGAATTGAGGACAATGAAACTCATTTTGATTGGGAGCTGTGATGCTGCCACATTTCCTGTTCAAAAGAAAAAGGCAAGTAGAGAGTATCTGAGAAGTGTAGCACACATGCGGCCTCGGACAAATACATTTGGTGCG
GTTGCCCGAGTAAGAAATGCCCTGGCATATGCTACACACAAGTTTTTCCAGGAGATGGGTTTTGTCTGGGTCGCTAGTCCAATAATCACTGCTTCAGATTGTGAAGGTGCTGGAGAGCAATTTTGTGTTACAACTTTGCTTTCTAGCTCTAAGGAGGATGTGGGCTCTCCAATTAGCATGATCCCTAGCACAAAGGATGG
TTATGTTGATTGGGCACAGGATTTTTTTGGAAAACCAGCATTCTTGACGGTGTCTGGACAGCTCAATGGAGAAGCCTATGCATGTGCTCTTTCGGATGTATACACCTTTGGTCCCACATTTCGAGCAGAACATTCAAACACATCACGTCATTTAGCTGAGTTCTGGATGATTGAACCAGAGCTTGCTTTTGCCAATCTGA
ATGATGACATGGCTTGTGCAACTGCCTATCTCCAGTATGTCGTGAGGTTCATTCTGGATAATTGCAAAGAAGATATGGAATTCTTCAATACCTGGATTGAAAAGGGGATAATTACACGTTTAAGTAATGTAGCAGAAAAGGAATTTGTGCAATTGACATATACGGATGCTGTTGAACTGCTTTTGAAAGCAAAGAAAAAT
TTTGAATTCCCGGTAACATGGGGATGTGATTTGCAAAGTGAGCATGAGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAAAGATTATCCCAAAgcaagtgcctggcttctgcagatgctgttatgcagtttatattggataattaatttactgttttgaaggttacactgtgccttaaagtttag
atttttctaaaatttcag
GATATAAAGGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGATGTTTTAGTTCCAAGGGTGGGTGAGCTCATTGGTGGAAGCCAACGTGAGGAACGCCTTGAATTACTGGAGAATAGAATGGAAGAGTTGGGGCTCAGAAAAGAAAGTTACTGGTGGTATCTTGA
TTTACGACGTTATGGTTCAG




Intron 2 GTATGTTGTG ... TGGCTATCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A132.572059924
A235.17153837
A335.51699313
A433.781497613
A532.14763615
A627.84127497
A731.6229213524
A831.161376212
A928.9238115537
A1032.7236617819



>TRINITY_DN116102_c3_g2_i4 from sample A1 / Example spliced isoform
AGCCAAACAAGATAAGGGGTTGCGCGGTAGAGGAAGGTGAGCAGCAAGGAATGGCAATGGCAATGGCAGGCTTCACCTCCACCATTTGCCTCGCAGCAACTTCCTCCTCTTCACGCCTTCGCGCCTCTAAAATTAGCAACATCGTCCATCTCCATTTTTTGCACCGTCGCCTCTTCCATGCGAGTTCCTCCGCGCCACTA
AAATTAGCACACTTTTCCAGCGCCCGCTCCCTACGTGGTGCTTCTGGCATCGAGTCGCAGGGATTGAATCCCAAATCTATTTATCGGAGAAGAGCCTGTGCCCGAGCCGATAGCAGTGTCCAGGTTTCTGAAGAGCAGCAATGCGGGTCTTCACCGGCGTCGTCGGGAACCGTAGGGAAATTCAAGAAGAGGCTTCGTAT
TGCTGACATTAAGGGCGGGCCGGACCAAGGGCTGGACCGCATTGGCCAGAGTCTTTCTATACGAGGATGGGTCCGAACCTGCAGAGCTCAAAAGTCTGTGACATTCATAGAGGTGAATGATGGGTCCTGTCTTTCAAACTTGCAGTGTGTGATGGGTTCTGATATTGAGGGATATGACAAGGTTGAGTCTGGCTTGATCA
CAACAGGGGCATCTATCTTTATAGATGGGGTTCTGGTAGCCAGTGCAGGCTCGAAGCAGAAGGTGGAATTGAGGACAATGAAACTCATTTTGATTGGGAGCTGTGATGCTGCCACATTTCCTGTTCAAAAGAAAAAGGCAAGTAGAGAGTATCTGAGAAGTGTAGCACACATGCGGCCTCGGACAAATACATTTGGTGCG


GTTGCC
CGAGTAAGAAATGCCCTGGCATATGCTACACACAAGTTTTTCCAGGAGATGGGTTTTGTCTGGGTCGCTAGTCCAATAATCACTGCTTCAGATTGTGAAGGTGCTGGAGAGCAATTTTGTGTTACAACTTTGCTTTCTAGCTCTAAGGAGGATGTGGGCTCTCCAATTAGCATGATCCCTAGCACAAAGGATGG
TTATGTTGATTGGGCACAGGATTTTTTTGGAAAACCAGCATTCTTGACGGTGTCTGGACAGCTCAATGGAGAAGCCTATGCATGTGCTCTTTCGGATGTATACACCTTTGGTCCCACATTTCGAGCAGAACATTCAAACACATCACGTCATTTAGCTGAGTTCTGGATGATTGAACCAGAGCTTGCTTTTGCCAATCTGA
ATGATGACATGGCTTGTGCAACTGCCTATCTCCAGTATGTCGTGAGGTTCATTCTGGATAATTGCAAAGAAGATATGGAATTCTTCAATACCTGGATTGAAAAGGGGATAATTACACGTTTAAGTAATGTAGCAGAAAAGGAATTTGTGCAATTGACATATACGGATGCTGTTGAACTGCTTTTGAAAGCAAAGAAAAAT
TTTGAATTCCCGGTAACATGGGGATGTGATTTGCAAAGTGAGCATGAGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAAAGATTATCCCAAAGATATAAAGGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGATGTTTTAGTTCCAAGGGTGGGTGAGCTCATTGG
TGGAAGCCAACGTGAGGAACGCCTTGAATTACTGGAGAATAGAATGGAAGAGTTGGGGCTCAGAAAAGAAAGTTACTGGTGGTATCTTGATTTACGACGTTATGGTTCAGTTCCTCATGCTGGGTTTGGATTGGGTTTTGAGAGGCTCGTCCAGTTTGCAACTGGAGTGGAGAACATCCGAGATGTTATACCATTTCCAA
GGACTCCTGGCTCTGCAGAATTTTAATTTCAAATGAAATTTTTTGTAGTTGAAATTAAATATGATTGCATATGGTGATGCTGTTGATTTTTTGTTGTTGTTGCAAAATTTAAACTTTTCTTTGCGCAAGAAATCAGGAGCTGTTCCCACTCTTTTTCTTTTTGTGCAGATGAAGTCCCAGGGTTGTGTAAAGTAAAAAAA
ATACTGACATGCTTTCAAAGAGTTTCTTTGAAAAGGAGAGAGAGATTAGAAGTCAATTGTTGATCAACATCTCTAGCCGTTGTCCTTAACCAATATGATATGGAATTTGAGATCCATTTGAATATAGATTTTTGGGGCAGAAATCACCCATTCTCTTAATACTTCAATAAAAATGTTTTGTTACACTCCCGTGACTGTTT
GACTGGATAACTATCACTCTGCTAGCCAACTACACCAACTAATTATTAATTTGTTGATGCATTTTTTTAGTGGTCATTGTGCATAGTAGATGCTTTTAGATCAAGTAAGAAATGAGTCAAAATGACTTATATAGTGTTTCATCTCCCATGAGACTCTGCCTTTGAGACTCTGTCTTTGAGCTCTTCTATGGGACTTGAGA
TGTATCAGAATCATATTGATCATTTTTTAATAATGAGTTGAAGTGATTGGTCTCTCATTTTGTCGTGTATTATTGTCCATGTTTTTCTTTTGTGTAAATTTGATATCATATCAGAGCCATGGTGACAGAACCAAGAAGGCGAAAGTGGGTAAGGCCTAGGGACTCCGTTGATCCATGACTGTACAAAGGACTGTTCACAC
ACAAATTGGAGAGAGGAACAAGCCAAGTTCTATATCAATGGTAAAGGTTGAGTCTTGAGTGAACAATGCCTCTCATCCAGCAGGTGAGTCAATGGTCAAACAGAGGGTTGGTAGTATGATTTGTTCTACATCAGCCTTGCCGAAAAAGACTATTTCCAATTGATGCTTGAAGACATCTCTTTGAAGTGGAG


>TRINITY_DN116102_c3_g2_i3 from sample A1 / Example unspliced isoform:
AGCCAAACAAGATAAGGGGTTGCGCGGTAGAGGAAGGTGAGCAGCAAGGAATGGCAATGGCAATGGCAGGCTTCACCTCCACCATTTGCCTCGCAGCAACTTCCTCCTCTTCACGCCTTCGCGCCTCTAAAATTAGCAACATCGTCCATCTCCATTTTTTGCACCGTCGCCTCTTCCATGCGAGTTCCTCCGCGCCACTA
AAATTAGCACACTTTTCCAGCGCCCGCTCCCTACGTGGTGCTTCTGGCATCGAGTCGCAGGGATTGAATCCCAAATCTATTTATCGGAGAAGAGCCTGTGCCCGAGCCGATAGCAGTGTCCAGGTTTCTGAAGAGCAGCAATGCGGGTCTTCACCGGCGTCGTCGGGAACCGTAGGGAAATTCAAGAAGAGGCTTCGTAT
TGCTGACATTAAGGGCGGGCCGGACCAAGGGCTGGACCGCATTGGCCAGAGTCTTTCTATACGAGGATGGGTCCGAACCTGCAGAGCTCAAAAGTCTGTGACATTCATAGAGGTGAATGATGGGTCCTGTCTTTCAAACTTGCAGTGTGTGATGGGTTCTGATATTGAGGGATATGACAAGGTTGAGTCTGGCTTGATCA
CAACAGGGGCATCTATCTTTATAGATGGGGTTCTGGTAGCCAGTGCAGGCTCGAAGCAGAAGGTGGAATTGAGGACAATGAAACTCATTTTGATTGGGAGCTGTGATGCTGCCACATTTCCTGTTCAAAAGAAAAAGGCAAGTAGAGAGTATCTGAGAAGTGTAGCACACATGCGGCCTCGGACAAATACATTTGGTGCG


gtatgttgtgcatttttgagtcttcagctgatataactgaaataggttttcaaaatttactttcagtgatgatttgatataaattatccgaactgtgatactgaatggaaaatgtgagtttggaagtgattttaaagagctgagttgatgtacaggatctcacctctgctttattggtaaagcattcttagccagggtta
gtatttttgagtctaaaagtattgtttaaaaggacaccatcttcattggttatatagtatgtctatgagattccattggaggaaagtgaggttcatgatcagttgctgcagttcataaagtatttgatttagtctgtgagatgaaaaatgtatactctaatataatctcaatgacaaagtatgttttgtaagttaatatt
tgtctattcatgagaaccatctctgcttttagatctaatttgctgcatgcctgaggaggctgtgcaggtttgtttttcttgaaaccaaccgtcaatgtttgtttcaaataaaaagtgtgttggcttttagagtattttcagtagtttgcctgtttagaatgttattttcatacccttttccaagctctaggacacaagga
attttgctttgcgcacaaaagttttttagagtattttcagtagtctgtctgtttagatttttccctgcctttttctaaggaatttttctttctggacaaaaaattaaacaagaactcttattgactggtttttattttgggtgctggctatcag
GTTGCCCGAGTAAGAAATGCCCTGGCATATGCTACACACAAGTTTT
TCCAGGAGATGGGTTTTGTCTGGGTCGCTAGTCCAATAATCACTGCTTCAGATTGTGAAGGTGCTGGAGAGCAATTTTGTGTTACAACTTTGCTTTCTAGCTCTAAGGAGGATGTGGGCTCTCCAATTAGCATGATCCCTAGCACAAAGGATGGTTATGTTGATTGGGCACAGGATTTTTTTGGAAAACCAGCATTCTTG
ACGGTGTCTGGACAGCTCAATGGAGAAGCCTATGCATGTGCTCTTTCGGATGTATACACCTTTGGTCCCACATTTCGAGCAGAACATTCAAACACATCACGTCATTTAGCTGAGTTCTGGATGATTGAACCAGAGCTTGCTTTTGCCAATCTGAATGATGACATGGCTTGTGCAACTGCCTATCTCCAGTATGTCGTGAG
GTTCATTCTGGATAATTGCAAAGAAGATATGGAATTCTTCAATACCTGGATTGAAAAGGGGATAATTACACGTTTAAGTAATGTAGCAGAAAAGGAATTTGTGCAATTGACATATACGGATGCTGTTGAACTGCTTTTGAAAGCAAAGAAAAATTTTGAATTCCCGGTAACATGGGGATGTGATTTGCAAAGTGAGCATG
AGCGTTATATAACAGAGGAAGCCTTTTCTGGTTCACCTGTTATTATAAAAGATTATCCCAAAGATATAAAGGCTTTCTATATGCGAGAAAATGCAGATGGGAAGACTGTAGCAGCTATGGATGTTTTAGTTCCAAGGGTGGGTGAGCTCATTGGTGGAAGCCAACGTGAGGAACGCCTTGAATTACTGGAGAATAGAATG
GAAGAGTTGGGGCTCAGAAAAGAAAGTTACTGGTGGTATCTTGATTTACGACGTTATGGTTCAGTTCCTCATGCTGGGTTTGGATTGGGTTTTGAGAGGCTCGTCCAGTTTGCAACTGGAGTGGAGAACATCCGAGATGTTATACCATTTCCAAGGACTCCTGGCTCTGCAGAATTTTAATTTCAAATGAAATTTTTTGT
AGTTGAAATTAAATATGATTGCATATGGTGATGCTGTTGATTTTTTGTTGTTGTTGCAAAATTTAAACTTTTCTTTGCGCAAGAAATCAGGAGCTGTTCCCACTCTTTTTCTTTTTGTGCAGATGAAGTCCCAGGGTTGTGTAAAGTAAAAAAAATACTGACATGCTTTCAAAGAGTTTCTTTGAAAAGGAGAGAGAGAT
TAGAAGTCAATTGTTGATCAACATCTCTAGCCGTTGTCCTTAACCAATATGATATGGAATTTGAGATCCATTTGAATATAGATTTTTGGGGCAGAAATCACCCATTCTCTTAATACTTCAATAAAAATGTTTTGTTACACTCCCGTGACTGTTTGACTGGATAACTATCACTCTGCTAGCCAACTACACCAACTAATTAT
TAATTTGTTGATGCATTTTTTTAGTGGTCATTGTGCATAGTAGATGCTTTTAGATCAAGTAAGAAATGAGTCAAAATGACTTATATAGTGTTTCATCTCCCATGAGACTCTGCCTTTGAGACTCTGTCTTTGAGCTCTTCTATGGGACTTGAGATGTATCAGAATCATATTGATCATTTTTTAATAATGAGTTGAAGTGA
TTGGTCTCTCATTTTGTCGTGTATTATTGTCCATGTTTTTCTTTTGTGTAAATTTGATATCATATCAGAGCCATGGTGACAGAACCAAGAAGGCGAAAGTGGGTAAGGCCTAGGGACTCCGTTGATCCATGACTGTACAAAGGACTGTTCACACACAAATTGGAGAGAGGAACAAGCCAAGTTCTATATCAATGGTAAAG
GTTGAGTCTTGAGTGAACAATGCCTCTCATCCAGCAGGTGAGTCAATGGTCAAACAGAGGGTTGGTAGTATGATTTGTTCTACATCAGCCTTGCCGAAAAAGACTATTTCCAATTGATGCTTGAAGACATCTCTTTGAAGTGGAG