sp|Q9LM71|FKB18_ARATH ----> Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic
Intron 1 GTCAGCTTTA ... ACTAGTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.17 | 12.7 | 1 | 5 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | 18.1 | 2.3 | 1 | 0 |
| A4 | 28.04 | 10.3 | 3 | 5 |
| A5 | 48.18 | 4 | 4 | 3 |
| A6 | 19.17 | 53.3 | 15 | 10 |
| A7 | 19.09 | 34.7 | 13 | 3 |
| A8 | 18.08 | 36.7 | 9 | 7 |
| A9 | 15.64 | 32.7 | 5 | 7 |
| A10 | 13.2 | 39.7 | 8 | 4 |
>TRINITY_DN42447_c0_g1_i4 from sample A7 / Example spliced isoformGGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCA
CCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCC
ATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGTACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAA
TGATGAGTGATGC
>TRINITY_DN42447_c0_g1_i3 from sample A7 / Example unspliced isoform:GGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGgtcagctttaagtgcaggatcaggaatgacaattagtgttttcattttattctctcagaaacaaaatagagatgagaacatttataatatatttatcctttctttctgccattggaaactggaacatatcaactgtcatcatataactagtaaagCCATATGAGTTTA
TTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCT
GATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCCATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGT
ACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGATGAGTGATGC
Intron 2 GTGTGGTTCC ... ACATCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 1 | 1 | 6 |
| A2 | 33.33 | 2 | 2 | 0 |
| A3 | 100 | 0 | 0 | 1 |
| A4 | 100 | 0 | 0 | 3 |
| A5 | 66.67 | 1 | 2 | 2 |
| A6 | 83.33 | 1 | 4 | 6 |
| A7 | 20 | 2 | 1 | 0 |
| A8 | 100 | 0 | 10 | 13 |
| A9 | 75 | 2 | 3 | 9 |
| A10 | 100 | 0 | 2 | 1 |
>TRINITY_DN42447_c0_g1_i3 from sample A7 / Example spliced isoformGGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGGTCAGCTTTAAGTGCAGGATCAGGAATGACAATTAGTGTTTTCATTTTATTCTCTCAGAAACAAAATAGAGATGAGAACATTTATAATATATTTATCCTTTCTTTCTGCCATTGGAAACTGGAACATATCAACTGTCATCATATAACTAGTAAAGCCATATGAGTTTA
TTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCT
GATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCCATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGT
ACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGATGAGTGATGC
>TRINITY_DN42447_c0_g1_i1 from sample A7 / Example unspliced isoform:GGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGGTCAGCTTTAAGTGCAGGATCAGGAATGACAATTAGTGTTTTCATTTCATTCTCTCAGAAACAAAATAGgtgtggttccaaaattataatttaagtttcatgctaatcacctcctagctacaagatatcttcacactttagcctgtggtttcataggcagtggtttat
tggtctaatagatatctacatcagcagAGATGAGAACATTTATAATAAATTTATCCTTTCTTTCTGCCATTGGAAACTGGAACATATCAACTGTCATCATATAACTAGTAAAGCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAA
GCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTG
GTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCCATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGTACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTT
CCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGATGAGTGATGC
Intron 3 GTCAGCTTTA ... CACCGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 3 | 1 | 6 |
| A2 | 44.44 | 5 | 2 | 6 |
| A3 | 33.33 | 4 | 1 | 3 |
| A4 | 80 | 1 | 3 | 5 |
| A5 | 57.14 | 3 | 5 | 3 |
| A6 | 42.86 | 30 | 15 | 30 |
| A7 | 51.72 | 14 | 21 | 9 |
| A8 | 49.37 | 20 | 19 | 20 |
| A9 | 50.88 | 14 | 15 | 14 |
| A10 | 46.88 | 17 | 11 | 19 |
>TRINITY_DN43813_c1_g1_i3 from sample A9 / Example spliced isoformCTCCAGTACAAAGTAGCCTGGATAGATGTGGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACC
AGCCCCTATTCGGAGATGCTACCCCTCATCCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTT
GCATTGCATTGTTGATTGAACAGCCTGCACAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGG
TCTTACTGTTGTCTCGAGTCGTGAATCCAAAATTCTGGCTGGAAATCGGGTGATTGCTCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAA
GTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCT
>TRINITY_DN43813_c1_g1_i5 from sample A9 / Example unspliced isoform:CTCCAGTACAAAGTAGCCTGGATAGATGTGGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACC
AGCCCCTATTCGGAGATGCTACCCCTCATCCGCCCCTTATTCACCCTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTT
GCATTGCATTGTTGATTGAACAGCCTGCACAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACACAGGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTC
TCGAGTCGTGAATCCAAAATTCTGGCTGGAAATCGGGTGATTGCTCAGgtcagctttaagtgcaggatcaggaatgacaattagtgttttcatttcattctctcagaaacaaaataggtgtggttccaaaattataatttaagtttcatgctaatcacctcctagctacaagatatcttcacactttagcctgtggtttc
ataggcagtggtttattggtctaatagatatctacatcagcagagatgagaacatttataatatatttatcctttctttctgccattggaaactggaacatatcaactgtcatcatataactagtaaagccatatgagtttattgttggagcaccaccgggcagGGAACGAAAACGCGAATTTGTAGACAATCCAAATGG
TCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAA
AGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCCATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGTACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCA
TGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGCTGAGTGATGCACTTTGCTTAAATAAATTGTGCTCGCAAATAAAAAAGCTGCTCAATTTAGGTTAGGATCTCATGAGATGCCTCTAGTGGAACCTTCTATG
ATCAGTGAACAAGTATTGCTGAACCAACCTTGGGAAAATGGCTAAGTGCCAAGGTGGAAGGATTGGTCCAAGTTGGCCAAATTAGGATCTCATGGGAATCTTCTAGT
Intron 4 GTCAGCTTTA ... ACTAGTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19 | 12.8 | 1 | 5 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | 18.29 | 2.3 | 1 | 0 |
| A4 | 34.25 | 10.6 | 3 | 8 |
| A5 | 52 | 3.9 | 5 | 3 |
| A6 | 20.65 | 54.6 | 16.2 | 12 |
| A7 | 20.49 | 36.3 | 15.6 | 3 |
| A8 | 25.1 | 37.5 | 16 | 9 |
| A9 | 22.18 | 33.6 | 10.2 | 9 |
| A10 | 15.42 | 40.8 | 9.8 | 5 |
>TRINITY_DN42447_c0_g1_i4 from sample A7 / Example spliced isoformGGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCA
CCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCC
ATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGTACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAA
TGATGAGTGATGC
>TRINITY_DN42447_c0_g1_i1 from sample A7 / Example unspliced isoform:GGATAACGTACAATATCTTTTGCAAAAGAGTGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGTTGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCAT
CCTCCCCTTATTCACCTTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAATGGCCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCA
CAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGTGTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCA
AAATTCTGGCTGGAAATCGGGTGATTGCTCAGgtcagctttaagtgcaggatcaggaatgacaattagtgttttcatttcattctctcagaaacaaaataggtgtggttccaaaattataatttaagtttcatgctaatcacctcctagctacaagatatcttcacactttagcctgtggtttcataggcagtggtttat
tggtctaatagatatctacatcagcagagatgagaacatttataataaatttatcctttctttctgccattggaaactggaacatatcaactgtcatcatataactagtaaagCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAA
GCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTG
GTCATAAGTTATAACTAAGGTTTTGGGCTAGAGATAGTGATTGTTTATTGCATCCCATGAACTTATTAATTCTTTGTACCCATGCATGTATGTTTATATAGGACAGTAGACCATTTTGAGAACTGTACCCTCTGTTACTGAGGACAATAAATTTTCTTATTCAGGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTT
CCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGATGAGTGATGC
Intron 5 GTTTTGGGCT ... TCTTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 2 | 6 | 3 |
| A2 | 100 | 0 | 8 | 1 |
| A3 | 66.67 | 1 | 4 | 0 |
| A4 | 50 | 2 | 2 | 2 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 77.62 | 16 | 80.7 | 30.3 |
| A7 | 74.42 | 11 | 46 | 18 |
| A8 | 84.83 | 11 | 72 | 51 |
| A9 | 78.18 | 12 | 63 | 23 |
| A10 | 68.42 | 3 | 6 | 7 |
>TRINITY_DN41654_c0_g1_i3 from sample A6 / Example spliced isoformCAATTGGTAGCCTCCAGTACAAAGTAGCCTGGATAGATGTGGATAACGTACAATATCTTTTGCAAAAGAGAGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGT
TGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCATCCGCCCCTTATTCACCCTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAAT
GACCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCACAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTGTGTCTTGGATGCTGTTCACTTTGATTGT
GTATACCGAGGTCTTACTGTTGTCTCGAGTCGTGAATCCAAAATTCTGGCTGGAAATCGGGTGATTGCTCAGCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGA
GGGCATGCGATTAGGAGCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGGTGATGAAGCAGTTCATCCATG
TTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTGCTAACTTTTAGGGATGCCTTATAATGCTGAGTGATGCACTTTGCTTAAATAAATTGTGCTCGCAAATAAAAAAGCTGCTCAATTTAGGTTAGGATCTCATGAGATGCCTCTAGTGGAACCTTCTATGAT
CAGTGAACAAGTATTGCTGAACCAACCTTGGGAAAATGGCTAAGTGCCAAGGTGGAAGGATTGGTCCAAGTTGGCCAGATTAGGATCTCATGGGAATCTTCTAGTAGAACCCTCTATGGCCTGTCAACTAGTATTGCTGCACTGAACTTGGGAAAAGACTAAGTCCCAAGGTGGAAGGATTGGTTCTAGTTGGCTAAGTT
AGGGTCTCATGAGAAGCTTCTAGTGGAATCTTCTATGATTTGTCAATAAGTATTGCTGCACTGACCTTGGGAGTTTCCCAAGTCCCAAGTGTTAGTTTTTTCTCTAATTCTAGAACCGATTTACACATTCAATTATTTTCCCAATAATTTACACATTCTAGAAATG
>TRINITY_DN41654_c0_g1_i8 from sample A6 / Example unspliced isoform:CAATTGGTAGCCTCCAGTACAAAGTAGCCTGGATAGATGTGGATAACGTACAATATCTTTTGCAAAAGAGAGTGGTGTGAGCGTTGTTGGCAATGGCCCTGGCATGCCATGACTACTTATATGCACTTGGCACAGGCAGAGCTGTTCCTCAGAATAGCCACATGTCTTCGTCTTCCTCTTCATTACAGCAGTATTTAAGT
TGGCATTTACCAGCCCCTATTCGGAGATGCTACCCCTCATCCGCCCCTTATTCACCCTTTCTTCATATCACTTCAAGCCCAAAACCCACAGGGGTTTCGGTTGGTCCGATTACTGCAGTGAAGATTCTAGCTGGTGGGCACCTGCGGGAGAAGGATAGGGAAATCGCTATTTCAAGACGAGAGGTGGGTGTTGCCACAAT
GACCCTTACTTGCATTGCATTGTTGATTGAACAGCCTGCACAGGCCAGACAGCGCAGGAACGCCAAAGCCATCCCCATTGAAGAATACAAAACCAACAGTGATGGGATTAAGTACTACGATCTGGTTGAAGGGAATGGGCCTGAAGCCAGAAAAGGGTCAACTGTGTTGGTTCACTTTGATTGTGTATACCGAGGTCTTA
CTGTTGTCTCGAGTCGTGAATCCAAAATTCTGGCTGGAAATCGGGTGATTGCTCAGCCATATGAGTTTATTGTTGGAGCACCACCGGGCAGGGAACGAAAACGCGAATTTGTAGACAATCCAAATGGTCTTTTCTCTGCTCAAGCAGCACCAAAGCCACCACCAGCTTTATATTCAATAACTGAGGGCATGCGATTAGGA
GCGCAGCGGACTGTAATTGTGCCACCTGAAGTGGGCTATGGTAAGAAGGGCATGAATGAAATTCCGCCTGATGGAACCTTTGAACTGAATGTGGAGCTTCTACAAGTCAAATCACCTACTCCAGCAAAGTAACATCTTTAGTGGTCATAAGTTATAACTAAGgttttgggctagagatagtgattgtttattgcatccca
tgaacttattaattctttgtacccatgcatgtatgtttatataggacagtagaccattttgagaactgtaccctctgttactgaggacaataaattttcttattcagGTGATGAAGCAGTTCATCCATGTTCAGTTTGATCTTCCATAAGTTATATTCTAATCTCATTTTGCTGTCAAAGAGACTGAAAACAGAGGGCTG
CTAACTTTTAGGGATGCCTTATAATGCTGAGTGATGCACTTTGCTTAAATAAATTGTGCTCGCAAATAAAAAAGCTGCTCAATTTAGGTTAGGATCTCATGAGATGCCTCTAGTGGAACCTTCTATGATCAGTGAACAAGTATTGCTGAACCAACCTTGGGAAAATGGCTAAGTGCCAAGGTGGAAGGATTGGTCCAAGT
TGGCCAGATTAGGATCTCATGGGAATCTTCTAGTAGAACCCTCTATGGCCTGTCAACTAGTATTGCTGCACTGAACTTGGGAAAAGACTAAGTCCCAAGGTGGAAGGATTGGTTCTAGTTGGCTAAGTTAGGGTCTCATGAGAAGCTTCTAGTGGAATCTTCTATGATTTGTCAATAAGTATTGCTGCACTGACCTTGGG
AGTTTCCCAAGTCCCAAGTGTTAGTTTTTTCTCTAATTCTAGAACCGATTTACACATTCAATTATTTTCCCAATAATTTACACATTCTAGAAATG