sp|Q9SKK0|EBF1_ARATH ----> EIN3-binding F-box protein 1

Intron 1 GTAAGCACAA ... TAATGTGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.92	259	67	87
A2	21.59	236	48	82
A3	21.07	296	63	95
A4	24.61	193	50	76
A5	21.53	133	33	40
A6	20.25	126	21	43
A7	18.87	346	59	102
A8	19.88	137	26	42
A9	18.79	268	45	79
A10	20.05	343	68	104

>TRINITY_DN39441_c2_g8_i2 from sample A9 / Example spliced isoform

GGAGTCGTCTTCAACTGCAGTAGTAAATGATGGCGGTGATGGAACCATGGTCGATGGACCAGATTCTTCTGTCAAGAAGGATAATTGGGGAAGTTCGAGGAGAGGTAGGGGCAAAGGCAAGGGAAACAGCAGAGGTCAAGGAAAAAGAAAGGAAATTGATACTCTTGATAATGAAGAAGCTGATACTATTGATGATGGGA
ATCCTGGAGCTAGAGGTCGAGGAGGAAGAGGATGTAGAGGGAAAGGGAAGCAGAAATTAAATGATGGGACGTCCTCCCAAGAAACAAAGTTTTCAGAGGTCGAATCTGAGAAGGAGGATTCAGGGTCCTCTGAGGATGAGTCTGACAAAGATGATGAAGTCAAAGCACATTCAGAAGAAAATCATGCAGAAGAAGAAATT
GCTCCAATTACCAAGCCTGTAGATATGGGAGCATCTTCTCACCAAACGGACTTATCAGAGAATAATGGGGTTCCATCTGCTGTGCAAATTAATCCGGTTGGAGATGATGTTCAGCAAGATGTAAATCCAGGTGCCAATATTTTTGAACTAAATGCAATTGAAGTGAATGGTGCTCCTCAGAATCAGAATAGGATTACATC
GAGAGAGAGGTTTCTTGCAATAGCCCGAAGGCGGGCTTCACATTTTGCATATTTCAATCCCGAAAATGATCAACCATCATCTTCTCAGCAGGGGTCCCAGCCCAATGCTACGGTTGGAAATGATGAAGAGAGAAGAGATTGGCCTGGCCCGTTTTCTACTGCCAGGCGCTTGGTAGAGGAAAGAGCAGCAGCACTGGCAG
ATCGTCAGGAAAAGCTTTATGGCAATGATAAGCCTGCATCTCTAATTGAATGGAAGCCTTCCCGGGACAAAGACTTTGTGACCCAAGTTATACCTCCTTCGCTATATGATTTATGTTTAAGCCTTTTGTGCAAACATGTTGAACATATTGAGACACTGGAAGGAATTCCTGATTCAGCCAAGGACAGAATCTGTAGTGCT
TTCTGTGCATTACGTAAAATGACTCCTCGGACTTTAGGATTATTCATTACAGGGTCTCCAACACAAATATTTGTTCCAGATTGCTCTCTTATACCGGAGGAAGATCTTACCAAGATAATTGCAGAATGTTCAACTACTAATCTAGAGGTACTACGATTGGGAATGTGTGGACGT

>TRINITY_DN39441_c2_g8_i1 from sample A9 / Example unspliced isoform:

GGAGTCGTCTTCAACTGCAGTAGTAAATGATGGCGGTGATGGAACCATGGTCGATGGACCAGATTCTTCTGTCAAGAAGGATAATTGGGGAAGTTCGAGGAGAGGTAGGGGCAAAGGCAAGGGAAACAGCAGAGGTCAAGGAAAAAGAAAGGgtaagcacaatctctctgacacttagagagccatcttattatgatgtt
tttgtttttgtttgtctttaacctctttcgaaacatacctggtctacaggattcttctctcagaatcataattcaaaactgaatttaatcatgatattcaatcaaagattctgctgatttttatatctattcttacctttaacgccctttgaaattacctggtctatgtgatctcttctcttagagttaaattgaaatcg
aatttaataataatctttttaaaggtgaatttagtaagaatctaattacatattttatcaatgatgttgatgatgctatgcgtacgctggtttttaccatcatttgaggcctacctggtctgtagagcctcttcttgtagaatcacaatcgaaaattgagtttgatcagagatttaatcaaggatgctgctgatgcacat
acttatgcttgcttttatcgcttcgaggcccacctggttgatttcttctcttacttgaaacaaaatatttggtctaggacctcttctcttagagtcaaaataaaataatgaatttaatcaaggatgctaggtaatgttggatattgaatttaagctcttatttgtcgtaaattcgtaatgtgaagAAATTGATACTCTTG
ATAATGAAGAAGCTGATACTATTGATGATGGGAATCCTGGAGCTAGAGGTCGAGGAGGAAGAGGATGTAGAGGGAAAGGGAAGCAGAAATTAAATGATGGGACGTCCTCCCAAGAAACAAAGTTTTCAGAGGTCGAATCTGAGAAGGAGGATTCAGGGTCCTCTGAGGATGAGTCTGACAAAGATGATGAAGTCAAAGCA
CATTCAGAAGAAAATCATGCAGAAGAAGAAATTGCTCCAATTACCAAGCCTGTAGATATGGGAGCATCTTCTCACCAAACGGACTTATCAGAGAATAATGGGGTTCCATCTGCTGTGCAAATTAATCCGGTTGGAGATGATGTTCAGCAAGATGTAAATCCAGGTGCCAATATTTTTGAACTAAATGCAATTGAAGTGAA
TGGTGCTCCTCAGAATCAGAATAGGATTACATCGAGAGAGAGGTTTCTTGCAATAGCCCGAAGGCGGGCTTCACATTTTGCATATTTCAATCCCGAAAATGATCAACCATCATCTTCTCAGCAGGGGTCCCAGCCCAATGCTACGGTTGGAAATGATGAAGAGAGAAGAGATTGGCCTGGCCCGTTTTCTACTGCCAGGC
GCTTGGTAGAGGAAAGAGCAGCAGCACTGGCAGATCGTCAGGAAAAGCTTTATGGCAATGATAAGCCTGCATCTCTAATTGAATGGAAGCCTTCCCGGGACAAAGACTTTGTGACCCAAGTTATACCTCCTTCGCTATATGATTTATGTTTAAGCCTTTTGTGCAAACATGTTGAACATATTGAGACACTGGAAGGAATT
CCTGATTCAGCCAAGGACAGAATCTGTAGTGCTTTCTGTGCATTACGTAAAATGACTCCTCGGACTTTAGGATTATTCATTACAGGGTCTCCAACACAAATATTTGTTCCAGATTGCTCTCTTATACCGGAGGAAGATCTTACCAAGATAATTGCAGAATGTTCAACTACTAATCTAGAGGTACTACGATTGGGAATGTG
TGGACGT