NA ----> NA

Intron 1 GTACGGAGAG ... TGTTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.11	11	5	8
A2	46.43	15	3	13
A3	48.28	15	2	14
A4	22.22	21	6	6
A5	53.85	6	0	7
A6	0	1	0	0
A7	33.33	2	0	1
A8	0	3	0	0
A9	0	1	0	0
A10	33.33	2	0	1

>TRINITY_DN115958_c2_g1_i18 from sample A3 / Example spliced isoform

GAATCTAAGAAGGTGTAGTGGTGAAGATTCCTTGCAAATGGAAAAAGTAGCGCGGAGGATAGGGCACTATCATGTTGCTAATGGGTGGGCGATTCATAAGTTTCTTGGAACTATCATAGAGACATTATATTGCTGTTGTTATCATGTCGATTTGTCCAATGAGTCCACGGAAATTGGCAATGGCCAAGCAGTACACATAG
CGAGTGACTACACTTTGGGCCCTTAGAAGGCCAAGCGAAGAAGATACCATAAATATTGAAAATTCATGGCAAAGGATTGGGAAGAAAGCACATTGCAGGAAAGATAATTTTGGATTTGGTTTGATTTTTCTGTTCGGCGGAGGGGAAAAGTGGTGCAAATAGCATACAGAGAACATGCGATGGGGATTATCGTTCAAACA
TGAAGTGGATGATTTCAGTTGTAGAATCTAAGAAGCTGTAGTGGTGAAGATGCCTTGCAAGTGGAATCTGTAGCTCAAAGGCAAGTGACAACAATTTGGGCCCTAAGAAGGTCGAGTAGAGAAGATACCATAAACATTGCAAACTCACGGCATGGGATCGGTGAGTCATGTTATTTTTTTGCAAATTAGAATTATTTTGA
AAGGGAATGAAATATTATTTGTTGCACTGCTACTTCTCTTATGAATACGTTGATTATATTGTTGCTAATAGAAGTACGTCGAGTGGAGAAATACCATAAACATCACAATTTCATGGCACAGGATCGGGGAAGAGAGC

>TRINITY_DN115958_c2_g1_i3 from sample A3 / Example unspliced isoform:

TATCACGTCAATTTGTTTGACGAGTCCAAGGAAGTTGTCTATGGCCAAGCACACATAGGGAAGAAAGCACATTGCAGGAAAGATAATgtacggagagaggaagtttgcaaacttttgtttgttgtttttttatgtactttagttttctttcctttaagcatggccatgctttgtttagtttgtcatgttttatggttgtt
tatctttgttttgtagTTTGGATTTGGTTTGATTTTTCTGTTCGGCGGAGGGGAAAAGTGGTGCAAATAGCATACAGAGAACATGCGATGGGGATTATCGTTCAAACATGAAGTGGATGATTTCAGTTGTAGAATCTAAGAAGCTGTAGTGGTGAAGATGCCTTGCAAGTGGAATTTGTAGCTCAAAGGGTAGGTGAGTC
GATCTTTAATCTTACAAATTAATGTTGTCATTTAACTGAATGAAATATTGTTGTTTGTAGAACAATTTATCGTTTTGTCATGGTTATGGTGCACTATCATGTTTCTAACGGATGAGTGATTCAAAAGTTTCCTGG