sp|Q9FFZ6|RBP11_ARATH ----> Small RNA-binding protein 11, chloroplastic
Intron 1 GTATGTGCTC ... ATCTATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 35 | 7 | 14 |
| A2 | 23.08 | 20 | 4 | 6 |
| A3 | 27.59 | 21 | 1 | 8 |
| A4 | 0 | 14 | 0 | 0 |
| A5 | 31.82 | 15 | 3 | 7 |
| A6 | 19.34 | 171 | 1 | 41 |
| A7 | 17.47 | 189 | 6 | 40 |
| A8 | 22.51 | 210 | 2 | 61 |
| A9 | 17.27 | 206 | 0 | 43 |
| A10 | 21.54 | 153 | 5 | 42 |
>TRINITY_DN99032_c0_g2_i1 from sample A2 / Example spliced isoformGACACTCTTCCCTATAAGAAAACATGGCGCACGTAAATGTGATTGCTAAAGTTGGTGTATTAGAAATTGAAACTTCATGGTATGAATCCATGGGGCAGTAGGGTTTAAAATATTTGAGAAGAGGGTGAAGAAGGCATTCGAGGAAGATGTCAATGGTTCCAGGGTTCAGGCGTTTGCTGGGGAATCGTCTCTCTTCTCCA
TGTCCACGCTTTACAGCCTTCTTTTCGAGGGGAATCACCACCAAACTTTTTGTTGGAGGACTTTCTTTTTATACAACAGAGAAAGCTTTGACAGAAGCATTCTCACGCTTTGGTGAAGTAGTCGAAGTTAAAGTAGTTATGGATAGAGTTTCTCAAAGATCAAAAGGCTTTGGATTTGTTCAATATGCTTCTGAAGCAGA
TGCAGAAAGAGCTAAAGCTGAAATGAATGGGAAGGTTCTGAGCGGGAGAATAATATTTGTGGATTCTGTAAAACCTAAATCTCAGCTTAGTGGGGATCTTCCAAGTGCGACAGTCCCTCCCGTTTTAAGCAGTGAAACAGTTGGCAGAGATGATTTTGAAAAGCTCTAATTTACAGATTCAATGCTTTTAGAATTTCTGG
TTTGCATTTCCAAGATAGGGTCATCATTGGTATATTGCCTAGGATTGCATTGCAAAATTCATCGTATTGTTTTGCTGTCAAAGAAAAGCAATTCTATTACACAATTAGAAAATCCGGAAGAAAACAGTACAGAGAAAAAATATTACTAAAATATGAATGTGTATGCTCTACATCCTCGTCATTGCATTTACCATTCAGAA
AACATCAGGAAAGGAAAAACATTTTCTCAACTTGATCTTTGAGTCTATACTATACTTCTAGATGAGTCTTTGCAGTCTTTAATGACCTTTGAAGCAGAAGCCCCCTCGTGTGGGGCAAGCTTTCATTGGTGAAGCAGAAAATATTCTTGGTTTATATTTGTCAGAATTTATATGTGAGTTGTTTAAGCTTTTATTGCCAT
TCTATATTCTTCTTCCAGTTAAGTTAATTTGAGGAATATGTGATCCCATTTCTCAACAAGAAGCACGATTTAATTAACGTGGCTGTAGTAACAGTGGTGGTTTGTGAGCAATTATTGCTTACAATTTAGT
>TRINITY_DN99032_c0_g2_i2 from sample A2 / Example unspliced isoform:GACACTCTTCCCTATAAGAAAACATGGCGCACGTAAATGTGATTGCTAAAGTTGGTGTATTAGAAATTGAAACTTCATGGTATGAATCCATGGGGCAGTAGGGTTTAAAATATTTGAGAAGAGGGTGAAGAAGGCATTCGAGGAAGATGTCAATGGTTCCAGGGTTCAGGCGTTTGCTGGGGAATCGTCTCTCTTCTCCA
TGTCCACGCTTTACAGCCTTCTTTTCGAGGGGAATCACCACCAAACTTTTTGTTGGAGGACTTTCTTTTTATACAACAGAGAAAGCTTTGACAGAAGCATTCTCACGCTTTGGTGAAGTAGTCGAAGGTATGTGGCAATGTGCATGCTATTTACTTCTGTGATGAGGTCATGCGAGGAGGAGGATGTGTGTTAGTGCATA
TACATGTAGCAGAAAACACTTCTAATGTCCACCTCAATCTCTTGCAAATCTTGGTCATTGCAGTTAAAGTAGTTATGGATAGAGTTTCTCAAAGATCAAAAGGCTTTGGATTTGTTCAATATGCTTCTGAAGCAGATGCAGAAAGAGCTAAAGCTGAAATGAATGGGAAGgtatgtgctctgtatctgcttgcagacttc
tctatagatgtttttaagtgtttagtaaattgaaacaatttctaaatctattcagGTTCTGAGCGGGAGAATAATATTTGTGGATTCTGTAAAACCTAAATCTCAGCTTAGTGGGGATCTTCCAAGTGCGACAGTCCCTCCCGTTTTAAGCAGTGAAACAGTTGGCAGAGATGATTTTGAAAAGCTCTAATTTACAGATT
CAATGCTTTTAGAATTTCTGGTTTGCATTTCCAAGATAGGGTCATCATTGGTATATTGCCTAGGATTGCATTGCAAAATTCATCGTATTGTTTTGCTGTCAAAGAAAAGCAATTCTATTACACAATTAGAAAATCCGGAAGAAAACAGTACAGAGAAAAAATATTACTAAAATATGAATGTGTATGCTCTACATCCTCGT
CATTGCATTTACCATTCAGAAAACATCAGGAAAGGAAAAACATTTTCTCAACTTGATCTTTGAGTCTATACTATACTTCTAGATGAGTCTTTGCAGTCTTTAATGACCTTTGAAGCAGAAGCCCCCTCGTGTGGGGCAAGCTTTCATTGGTGAAGCAGAAAATATTCTTGGTTTATATTTGTCAGAATTTATATGTGAGT
TGTTTAAGCTTTTATTGCCATTCTATATTCTTCTTCCAGTTAAGTTAATTTGAGGAATATGTGATCCCATTTCTCAACAAGAAGCACGATTTAATTAACGTGGCTGTAGTAACAGTGGTGGTTTGTGAGCAATTATTGCTTACAATTTAGT
Intron 2 GTATGTGGCA ... GTCATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.28 | 36 | 7 | 2 |
| A2 | 25.93 | 20 | 7 | 2 |
| A3 | 26.92 | 38 | 14 | 2 |
| A4 | 18.92 | 30 | 7 | 0 |
| A5 | 20.83 | 19 | 5 | 1 |
| A6 | 16.2 | 181 | 35 | 2 |
| A7 | 17.89 | 179 | 39 | 3 |
| A8 | 14.79 | 144 | 25 | 4 |
| A9 | 16.67 | 170 | 34 | 5 |
| A10 | 22 | 156 | 44 | 7 |
>TRINITY_DN99032_c0_g2_i1 from sample A2 / Example spliced isoformGACACTCTTCCCTATAAGAAAACATGGCGCACGTAAATGTGATTGCTAAAGTTGGTGTATTAGAAATTGAAACTTCATGGTATGAATCCATGGGGCAGTAGGGTTTAAAATATTTGAGAAGAGGGTGAAGAAGGCATTCGAGGAAGATGTCAATGGTTCCAGGGTTCAGGCGTTTGCTGGGGAATCGTCTCTCTTCTCCA
TGTCCACGCTTTACAGCCTTCTTTTCGAGGGGAATCACCACCAAACTTTTTGTTGGAGGACTTTCTTTTTATACAACAGAGAAAGCTTTGACAGAAGCATTCTCACGCTTTGGTGAAGTAGTCGAAGTTAAAGTAGTTATGGATAGAGTTTCTCAAAGATCAAAAGGCTTTGGATTTGTTCAATATGCTTCTGAAGCAGA
TGCAGAAAGAGCTAAAGCTGAAATGAATGGGAAGGTTCTGAGCGGGAGAATAATATTTGTGGATTCTGTAAAACCTAAATCTCAGCTTAGTGGGGATCTTCCAAGTGCGACAGTCCCTCCCGTTTTAAGCAGTGAAACAGTTGGCAGAGATGATTTTGAAAAGCTCTAATTTACAGATTCAATGCTTTTAGAATTTCTGG
TTTGCATTTCCAAGATAGGGTCATCATTGGTATATTGCCTAGGATTGCATTGCAAAATTCATCGTATTGTTTTGCTGTCAAAGAAAAGCAATTCTATTACACAATTAGAAAATCCGGAAGAAAACAGTACAGAGAAAAAATATTACTAAAATATGAATGTGTATGCTCTACATCCTCGTCATTGCATTTACCATTCAGAA
AACATCAGGAAAGGAAAAACATTTTCTCAACTTGATCTTTGAGTCTATACTATACTTCTAGATGAGTCTTTGCAGTCTTTAATGACCTTTGAAGCAGAAGCCCCCTCGTGTGGGGCAAGCTTTCATTGGTGAAGCAGAAAATATTCTTGGTTTATATTTGTCAGAATTTATATGTGAGTTGTTTAAGCTTTTATTGCCAT
TCTATATTCTTCTTCCAGTTAAGTTAATTTGAGGAATATGTGATCCCATTTCTCAACAAGAAGCACGATTTAATTAACGTGGCTGTAGTAACAGTGGTGGTTTGTGAGCAATTATTGCTTACAATTTAGT
>TRINITY_DN99032_c0_g2_i2 from sample A2 / Example unspliced isoform:GACACTCTTCCCTATAAGAAAACATGGCGCACGTAAATGTGATTGCTAAAGTTGGTGTATTAGAAATTGAAACTTCATGGTATGAATCCATGGGGCAGTAGGGTTTAAAATATTTGAGAAGAGGGTGAAGAAGGCATTCGAGGAAGATGTCAATGGTTCCAGGGTTCAGGCGTTTGCTGGGGAATCGTCTCTCTTCTCCA
TGTCCACGCTTTACAGCCTTCTTTTCGAGGGGAATCACCACCAAACTTTTTGTTGGAGGACTTTCTTTTTATACAACAGAGAAAGCTTTGACAGAAGCATTCTCACGCTTTGGTGAAGTAGTCGAAGgtatgtggcaatgtgcatgctatttacttctgtgatgaggtcatgcgaggaggaggatgtgtgttagtgcata
tacatgtagcagaaaacacttctaatgtccacctcaatctcttgcaaatcttggtcattgcagTTAAAGTAGTTATGGATAGAGTTTCTCAAAGATCAAAAGGCTTTGGATTTGTTCAATATGCTTCTGAAGCAGATGCAGAAAGAGCTAAAGCTGAAATGAATGGGAAGGTATGTGCTCTGTATCTGCTTGCAGACTTC
TCTATAGATGTTTTTAAGTGTTTAGTAAATTGAAACAATTTCTAAATCTATTCAGGTTCTGAGCGGGAGAATAATATTTGTGGATTCTGTAAAACCTAAATCTCAGCTTAGTGGGGATCTTCCAAGTGCGACAGTCCCTCCCGTTTTAAGCAGTGAAACAGTTGGCAGAGATGATTTTGAAAAGCTCTAATTTACAGATT
CAATGCTTTTAGAATTTCTGGTTTGCATTTCCAAGATAGGGTCATCATTGGTATATTGCCTAGGATTGCATTGCAAAATTCATCGTATTGTTTTGCTGTCAAAGAAAAGCAATTCTATTACACAATTAGAAAATCCGGAAGAAAACAGTACAGAGAAAAAATATTACTAAAATATGAATGTGTATGCTCTACATCCTCGT
CATTGCATTTACCATTCAGAAAACATCAGGAAAGGAAAAACATTTTCTCAACTTGATCTTTGAGTCTATACTATACTTCTAGATGAGTCTTTGCAGTCTTTAATGACCTTTGAAGCAGAAGCCCCCTCGTGTGGGGCAAGCTTTCATTGGTGAAGCAGAAAATATTCTTGGTTTATATTTGTCAGAATTTATATGTGAGT
TGTTTAAGCTTTTATTGCCATTCTATATTCTTCTTCCAGTTAAGTTAATTTGAGGAATATGTGATCCCATTTCTCAACAAGAAGCACGATTTAATTAACGTGGCTGTAGTAACAGTGGTGGTTTGTGAGCAATTATTGCTTACAATTTAGT