sp|Q9XGY4|TIM8_ARATH ----> Mitochondrial import inner membrane translocase subunit TIM8

Intron 1 GTTTATTTTG ... ATTTCTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	14.88	163	12	45
A2	13.22	233	14	57
A3	12.57	219	19	44
A4	12.31	171	13	35
A5	12.74	113	6	27
A6	11.78	2227	130	465
A7	12.92	1682	155	344
A8	13.81	1214	102	287
A9	11.91	1660	137	312
A10	13.54	1175	110	258

>TRINITY_DN132387_c2_g2_i2 from sample A1 / Example spliced isoform

ATATAAAATAAAATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGT
AGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTG
TAGTTTCAAATGCATTAAGATGAAGAGTTAGAAAAGGTGGATTGGACAATTCAGAGGGAAAATCTAATTTTAAATAACTTCTTTATCCAGTTAGAAAAGACTCCCAAAATTTTCCAAGAGTCGCCACTCTACAGAATATTTCGTTTAACTCAATTTAACATTGCATATTAGTACTTTCAAAGCAATTTATTGCAAAAGGG
CTCCTCAACTCCATAATTTTTGCCTAAGATTTCAAACTTTTTCTGGGTATTTTATGATTATGTTAATTCCTAACCCTAACTTATTTCCTTTTATTTGAATATTTTAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCC

>TRINITY_DN132387_c2_g2_i3 from sample A1 / Example unspliced isoform:

ATATAAAATAAAATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGgtttattttggacaattgtacatctcaacttcccc
agccatttcttcagCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACTGACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCAC
TAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTGTAGTTTCAAATGCATTAAGATGAAGAGTTAGAAAAGGTGGATTGGACAATTCAGAGGGAAAATCTAATTTTAAATAACTTCTTTATCCAGTTAGAAAAGACTCCCAAAATTTTCCAAGAGTCGCCACTCTACAGAATATTTCGTTTAACTC
AATTTAACATTGCATATTAGTACTTTCAAAGCAATTTATTGCAAAAGGGCTCCTCAACTCCATAATTTTTGCCTAAGATTTCAAACTTTTTCTGGGTATTTTATGATTATGTTAATTCCTAACCCTAACTTATTTCCTTTTATTTGAATATTTTAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTC
CACACTGCATTAGAAGATGATATTTTCGCCC

Intron 2 GTGGATTGGA ... AATATTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	83.76	19	98	7
A2	76.13	25.7	82	1.1
A3	80.85	27	114	4
A4	69.74	23	53	1.9
A5	78.57	9	33	1
A6	82	264.1	1203	16.4
A7	83.95	157	821	18.4
A8	82.53	224	1058	30.4
A9	83.08	202	992	42.9
A10	83.19	117	579	26

>TRINITY_DN113706_c2_g5_i2 from sample A3 / Example spliced isoform

AAAATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACT
GACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTGTAGTTTCAA
ATGCATTAAGATGAAGAGTTAGAAAAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGGTTTACATATGTTTTCTGAAAGAGCCATGATGAACTGATGTTGGATTGACAAAGGGTGATAGTCTTCTCGACATTGATTTGATTGACAAA
GGATGCTAGTCTTCTTTGAGAGCCACCATTGCCCCTCTCTGCTATCTGAGCTGATCGACCACCGATCTGATCCATTCAGATCGTAGAGCCAAC

>TRINITY_DN113706_c2_g5_i1 from sample A3 / Example unspliced isoform:

AAAATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACT
GACAGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTGTAGTTTCAA
ATGCATTAAGATGAAGAGTTAGAAAAGgtggattggacaattcagagggaaaatctaattttaaataacttctttatccagttagaaaagactcccaaaattttccaagagtcgccactctacagaatatttcgtttaactcaatttaacattgcatattagtactttcaaagcaatttattgcaaaagggctcctcaac
tccataatttttgcctaagatttcaaactttttctgggtattttatgattatgttaattcctaaccctaacttatttccttttatttgaatattttagATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGGTTTACATATGTTTTCTGA
AAGAGCCATGATGAACTGATGTTGGATTGACAAAGGGTGATAGTCTTCTCGACATTGATTTGATTGACAAAGGATGCTAGTCTTCTTTGAGAGCCACCATTGCCCCTCTCTGCTATCTGAGCTGATCGACCACCGATCTGATCCATTCAGATCGTAGAGCCAAC

Intron 3 GTATGTTGTG ... TTCTTAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	-1	0	0	1
A2	-1	0	0	1
A3	50	1	1	0
A4	0	2	0	2
A5	0	1	0	1
A6	75	1	3	0
A7	53.33	7	8	2
A8	52	12	13	1
A9	46.67	16	14	2
A10	46.15	7	6	1

>TRINITY_DN41404_c0_g1_i2 from sample A8 / Example spliced isoform

ATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACTGAC
AGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTGTAGTTTCAAATG
CATTAAGATGAAGAGTTAGAAAAGGTGGATTGGACAATTCAGAGGGAAAATCTAATTTTAAATAACTTCTTTATCCAGTTAGAAAAGACTCCCAAAATTTTCCAAGAGTCGCCACTCTACAGAATATTTCGTTTAACTCAATTTAACATTGCATATTAGTACTTTCAAAGCAATTTATTGCAAAAGGGCTCCTCAACTCC
ATAATTTTTGCCTAAGATTTCAAACTTTTTCTGGGTATTTTATGATTATGTTAATTCCTAACCCTAACTTATTTCCTTTTATTTGAATATTTTAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGGTTTACATATGTTTTCTGAAAG


GATCACTAATACTAATTAGTTGATTGGCGAGAGAAATATGAATCATCCAGCATTACTATGGTAGCATGAAAGTATATAGCATGCATTTATTGTTAGATATGCACAATATCTATGAAGAAAATGTTATGTAACATGTATTTGTTAACAGATATGCACATTATATATGAAGAAAATATTGCCATCCACACTTGCTGGAAAGT
ATGCGAGTATAACAGTTGTTTCATCCTTCTGGGATTGGAGAGTTTACTTTTTTCGACAGTTTACTGGAGTATAATTTTGAAATTTTATATAGAAAGATGTATATGTGCATCCCGAGTATGATGTTCTTTCAGCAAAGTAATAGCATTTAGTAGCGATTCAGAATAGAAGTAATATTTAGTAGCAACTTGTTGCATGTATA
CTACCATCAAACATGTGCAAAAATAGCATATATTTAGCAAGGCATGTTAAAAAGACATTCG

>TRINITY_DN41404_c0_g1_i1 from sample A8 / Example unspliced isoform:

ATAAAAGGCCTTATAAGGGCCCAATAGAGTACAGTAGTGGGTAGCCTTGGTTGTGAGAGGTTTTCTATTCTTTCAAGTGTTCAGGATTGAAGCGGCCGAGCGCAGGCGATGGATTCTCCCTCAATGAACGCGGATTTGCAGAGCTTTCTCGAGCAAGAAAAGCAAAAAGCGATGATGAATGAACTCGTAGGAAAACTGAC
AGATGTCTGCTGGGATAAATGCATTACAAGTGCTCCTGGGAGCAAGTTTAGCTCCAGTGAGACTGCCTGCCTTACCAATTGTGCTCAACGTTTTTTAGACATGAGTGCAATAATCATTCGACGGTTTCAGAGCATGCACTAAGCGGTGAAGAGTCATTGGGAAGTTGCTTTTGTGAGCCAGAAGCTTGTAGTTTCAAATG
CATTAAGATGAAGAGTTAGAAAAGGTGGATTGGACAATTCAGAGGGAAAATCTAATTTTAAATAACTTCTTTATCCAGTTAGAAAAGACTCCCAAAATTTTCCAAGAGTCGCCACTCTACAGAATATTTCGTTTAACTCAATTTAACATTGCATATTAGTACTTTCAAAGCAATTTATTGCAAAAGGGCTCCTCAACTCC
ATAATTTTTGCCTAAGATTTCAAACTTTTTCTGGGTATTTTATGATTATGTTAATTCCTAACCCTAACTTATTTCCTTTTATTTGAATATTTTAGATTTTCCAATTACCTCCTGCTGTGGAAACATATTGCTTGATTTCCACACTGCATTAGAAGATGATATTTTCGCCCACATTGAGGTTTACATATGTTTTCTGAAAG


gtatgttgtgacttagttttgacttttaatacaattattatttcttatttcaagatgaagatattcatgcatgctatgcaaacaatgtcgttatttcttagcagGATCACTAATACTAATTAGTTGATTGGCGAGAGAAATATGAATCATCCAGCATTACTATGGTAGCATGAAAGTATATAGCATGCATTTATTGTTAG
ATATGCACAATATCTATGAAGAAAATGTTATGTAACATGTATTTGTTAACAGATATGCACATTATATATGAAGAAAATATTGCCATCCACACTTGCTGGAAAGTATGCGAGTATAACAGTTGTTTCATCCTTCTGGGATTGGAGAGTTTACTTTTTTCGACAGTTTACTGGAGTATAATTTTGAAATTTTATATAGAAAG
ATGTATATGTGCATCCCGAGTATGATGTTCTTTCAGCAAAGTAATAGCATTTAGTAGCGATTCAGAATAGAAGTAATATTTAGTAGCAACTTGTTGCATGTATACTACCATCAAACATGTGCAAAAATAGCATATATTTAGCAAGGCATGTTAAAAAGACATTCG