sp|Q9LDV4|ALAT2_ARATH ----> Alanine aminotransferase 2, mitochondrial
Intron 1 GTCAGTTCTG ... TGTGGTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44 | 28 | 32 | 12 |
| A2 | 50.65 | 19 | 23 | 16 |
| A3 | 56.32 | 19 | 32 | 17 |
| A4 | 62.67 | 14 | 27 | 20 |
| A5 | 41.46 | 12 | 13 | 4 |
| A6 | 30.53 | 33 | 29 | 0 |
| A7 | 43.65 | 51 | 59 | 20 |
| A8 | 36 | 48 | 50 | 4 |
| A9 | 36 | 48 | 41 | 13 |
| A10 | 45.24 | 23 | 31 | 7 |
>TRINITY_DN40932_c1_g4_i6 from sample A9 / Example spliced isoformCTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGGGTTTAGGAGGATTTTGTGT
TAACAAATAGAGAAGTGGAGAAGTTTTCAAACATGGAAACTTATATTTATGAGCATCACCTCTTTCTGTGTTCTGGAAGCACCTGTAAACATTTCTTGTTTTTGTAAGTTTCTGCTGGGGCATTCATGGAACTTTTTGGTTCTCACCCCTCAAAATATGCTTTTGAGCAGTTTCTGGATTTTTAGGTGGTGCCGTCGTGT
TGTCAAGCTAGGGGGAAACTTTAAAATGACTAAAATGAAAGTAGAAAAACAAAGATAATTTTTTCCTGGGAAATTATTATCATTAAAATATCTCTTTCAGGTTCTTTGTGTTCACATGTTTAATTTATGCAAATTCATGTTAAATCTTTTATATCACTGCTGCCTTGTTTTTGTAAAGGGATTTACCTAGAGAGTTTATT
GAAAAATTAAAAACTGTCTTCTTTTTTTGAAAATAGATTTCCCTAAGGAGTTGATTAAAAATTTAAGAAGTCATTTGCTTGTTTCTGTTGGGTTAATTTCCACTCAACAGCTTTGAGAAAGATGAGCATTGTACTAAAGATGCATTGATCACGTGCTAATCTGTCTTATGTGGATGGATTTGACATGGTTGTTGATGAGG
ATTAATCTAGCTGAATAAACACATGATTTGTTTCTTCTAGCCAATCTTATCTACCTACCCATCCTAATCCTATCATCACTTCCAACTTTGTTTCTTCAACCACTTATATGCAAAACATAGACAATTTAAATCTCTCTGGATTTTGCTTTGAAATCCTATTTTTGGTTGAAATTAGCCAAATTCAAAGTGTCTTCATGCTA
TACTTTTCTAATTTTTTTCTAGACATTGATACTATTGTACAACCACAACAAAATTGCTTATAACTTTTGCTGTGCTGAAAATTTTGTTGAGGCTTGTGGTGGCTCCTAGTAGCATATAGCTGTAATGTCCCTTTCCGCATGATCACTCGAGGGGATGACTTACTAGCCTATTTTATTCCTGTAGGCTATAGTCGACGAAA
AAATGAATTAAATAATTATTTAATGTCAAATGGGGCAAAAAGTAACATTGGAAGTGACATTAAGTAATTATTTAAAAAATGGACTTTATGAAAAGTCACTTTATTTAATTAAAAGCGGGAAATGGTGTAAGTGGCCAAAAAGGGTAAAAAATGCATAAAAGGGAAAAGTGACCCATTCTCTCATTCATCATGTCATTTTC
ACTTTCGAAAAATAAATTTGGAGAGCTCTTTTGACTTTTTCTCTCGGGAGAGAAACCCAAAGAGAACATCAGTTTTGGTGGTGAAACTATCCACTCTAGTCAATCAAGTTGGAGAGATCAGGTAGATTTTTCACTGATATTCGTGGTTGAAGACAGTGATAAACCATTTTGTGTAAAAACGTGGTGCATTTCAGAGTTTT
GAAGGCTGTTTACAGAGGGTGCACTTGTCAAATGAAAGCGTACTAGTACTTTCTTGCAACTGCTGCAACATATTGCCGTGGAGTGGACGAGTTGACTGTAGAAAGGTGCCTTGCTTCTAAGAGGGACGATTTGACTGTTAAGTGACCCAAGTGTGGTGAAAAAAAAGGAGGGCGTATTCTTCATTGTGGGGGCTGCAAAC
CCTTGTGGAGGCAGCGTGCAATTCTGAGAACTGTGTGCTTATCTGTGGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATAAGGAGAAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTAGAGGAGAGACAGTCTGCTACAGGCTGCTGGGCACATGC
TCTGTGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATAAGGAGGAGTGTTGAATTTTGTACCTAGGAGAGTGTTCCCCTAGGTGACTTTTGCCTTAGTCACTTAAAAAGGGGAAATAAAGTGACTCTTGCATTAAATGACTCGAGATAAGCATTTAACTTA
ACTTTAGAGATTAAAGTTACTTTTTGATAAATTTAAGTGAAGTGAGTGAAATTAATTTTCATGAGAATTAAATGTGCATTTATTCTCATCCACTCATCTAAACCAATCTGAGCCTTTGGATTAGATGGCTTTTTACTCACCCTAGGTTTTCACTCAAAAAGGCAAGGGAAGGCATTTAGACATTATCTTCTTGTTGTTGG
AGAAGAAGAAAAGAGAGAGCAGAGAGAGGGCACAATTTTCTAGGCAGCCGTACAGGGCAATTAATGCAGCAGCACGATTCCTGAGGCAGAGAGAAAAGTACAGCAGCACGAACCCGAGGCCATAGAGCAGAAAAGGTGGGCACAGATTTCGAGAAGAAATCTGGGCGTGAATCCTGAGGCAGTGGGCACGGTTTCCCAGA
CAAATTTCTGGGTGCATTTTCTGAGGCAGTGGGCACATTTTTCGAGGCCATACACAGCACAGTTTTCGAGAAAAGTACAGGCACATTTTTTGAGGACAGTATAGTGCGTACCTGTCCATTCTGGCACATTTTTTGAGATGCTGGGTTTGCACAGAAATCGAGGCAGTTTGCAGCACGCTTTTCGAGGCAGCCTGTGGGTG
AATTTTTCGGTGGAGATAAGTTGTATCTTGACTGTAAATTTGCTGTTCTGAATTTTTCCTGAAGAAATAAAATCATCTCTCTCTAACAGGTTTTCTCCTTGTGGGTTTTTCCTGGGCAATTTTGCCAAAAATTTATGAGGCTGAAATATTTTATGGTGTGCATTTAAATTTCATTTTTCTGCCTGTAAATGTGAGTTTCA
GCGGTGTTTTCAATGTCTGAAAATTATTTGCAATTTCCAGCCATCATACAAACTGGTCTGGGCATTAAACTATGAAAATTTGACTTGAAAACCGGGTTGGGTTGATTCTCAGAAAACTTTCAAGGAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGC
TCTGGGATCAGTTTCCTC
>TRINITY_DN40932_c1_g4_i9 from sample A9 / Example unspliced isoform:CTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGgtcagttctgtgaacattca
atgttgaatggttgttttattttccttaagaaagaagtctaataatctactattaacttcctctttatgtggtcaagGGTTTAGGAGGATTTTGTGTTAACAAATAGAGAAGTGGAGAAGTTTTCAAACATGGAAACTTATATTTATGAGCATCACCTCTTTCTGTGTTCTGGAAGCACCTGTAAACATTTCTTGTTTTT
GTAAGTTTCTGCTGGGGCATTCATGGAACTTTTTGGTTCTCACCCCTCAAAATATGCTTTTGAGCAGTTTCTGGATTTTTAGGTGGTGCCGTCGTGTTGTCAAGCTAGGGGGAAACTTTAAAATGACTAAAATGAAAGTAGAAAAACAAAGATAATTTTTTCCTGGGAAATTATTATCATTAAAATATCTCTTTCAGGTT
CTTTGTGTTCACATGTTTAATTTATGCAAATTCATGTTAAATCTTTTATATCACTGCTGCCTTGTTTTTGTAAAGGGATTTACCTAGAGAGTTTATTGAAAAATTAAAAACTGTCTTCTTTTTTTGAAAATAGATTTCCCTAAGGAGTTGATTAAAAATTTAAGAAGTCATTTGCTTGTTTCTGTTGGGTTAATTTCCAC
TCAACAGCTTTGAGAAAGATGAGCATTGTACTAAAGATGCATTGATCACGTGCTAATCTGTCTTATGTGGATGGATTTGACATGGTTGTTGATGAGGATTAATCTAGCTGAATAAACACATGATTTGTTTCTTCTAGCCAATCTTATCTACCTACCCATCCTAATCCTATCATCACTTCCAACTTTGTTTCTTCAACCAC
TTATATGCAAAACATAGACAATTTAAATCTCTCTGGATTTTGCTTTGAAATCCTATTTTTGGTTGAAATTAGCCAAATTCAAAGTGTCTTCATGCTATACTTTTCTAATTTTTTTCTAGACATTGATACTATTGTACAACCACAACAAAATTGCTTATAACTTTTGCTGTGCTGAAAATTTTGTTGAGGCTTGTGGTGGC
TCCTAGTAGCATATAGCTGTAATGTCCCTTTCCGCATGATCACTCGAGGGGATGACTTACTAGCCTATTTTATTCCTGTAGGCTATAGTTGACGAGAAAATGAATTAAATAATTATTTAATGTCAAATGGGGCAAAAAGTAACATTGGAAGTGACATTAAGTAATTATTTAAAAAATGGACTTTATGAAAAGTCACTTTA
TTTAATTAAAAGCGGGAAATGGTGTAAGTGGCCAAAAAGGGTAAAAAATGCATAAAAGGGAAAAGTGACCCATTCTCTCATTCATCATGTCATTTTCACTTTCGAAAAATAAATTTGGAGAGCTCTTTTGACTTTTTCTCTCGGGAGAGAAACCCAAAGAGAACATCAGTTTTGGTGGTGAAACTATCCACTCTAGTCAA
TCAAGTTGGAGAGATCAGGTAGATTTTTCACTGATATTCGTGGTTGAAGACAGTGATAAACCATTTTGTGTAAAAACGTGGTGCATTTCAGAGTTTTGAAGGCTGTTTACAGAGGGTGCACTTGTCAAATGAAAGCGTACTAGTACTTTCTTGCAACTGCTGCAACATATTGCCGTGGAGTGGACGAGTTGACTGTAGAA
AGGTGCCTTGCTTCTAAGAGGGACGATTTGACTGTTAAGTGACCCAAGTGTGGTGAAAAAAAAGGAGGGCGTATTCTTCATTGTGGGGGCTGCAAACCCTTGTGGAGGCAGCGTGCAATTCTGAGAACTGTGTGCTTATCTGTGGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATC
TCTGTGGGTGATTATAAGGAGAAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTAGAGGAGAGACAGTCTGCTACAGGCTGCTGGGCACATGCTCTGTGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATAAGGAGGAGTGTTGAATTTTGTACCTA
GGAGAGTGTTCCCCTAGGTGACTTTTGCCTTAGTCACTTAAAAAGGGGAAATAAAGTGACTCTTGCATTAAATGACTCGAGATAAGCATTTAACTTAACTTTAGAGATTAAAGTTACTTTTTGATAAATTTAAGTGAAGTGAGTGAAATTAATTTTCATGAGAATTAAATGTGCATTTATTCTCATCCACTCATCTAAAC
CAATCTGAGCCTTTGGATTAGATGGCTTTTTACTCACCCTAGGTTTTCACTCAAAAAGGCAAGGGAAGGCATTTAGACATTATCTTCTTGTTGTTGGAGAAGAAGAAAAGAGAGAGCAGAGAGAGGGCACAATTTTCTAGGCAGCCGTACAGGGCAATTAATGCAGCAGCACGATTCCTGAGGCAGAGAGAAAAGTACAG
CAGCACGAACCCGAGGCCATAGAGCAGAAAAGGTGGGCACAGATTTCGAGAAGAAATCTGGGCGTGAATCCTGAGGCAGTGGGCACGGTTTCCCAGACAAATTTCTGGGTGCATTTTCTGAGGCAGTGGGCACATTTTTCGAGGCCATACACAGCACAGTTTTCGAGAAAAGTACAGGCACATTTTTTGAGGACAGTATA
GTGCGTACCTGTCCATTCTGGCACATTTTTTGAGATGCTGGGTTTGCACAGAAATCGAGGCAGTTTGCAGCACGCTTTTCGAGGCAGCCTGTGGGTGAATTTTTCGGTGGAGATAAGTTGTATCTTGACTGTAAATTTGCTGTTCTGAATTTTTCCTGAAGAAATAAAATCATCTCTCTCTAACAGGTTTTCTCCTTGTG
GGTTTTTCCTGGGCAATTTTGCCAAAAATTTATGAGGCTGAAATATTTTATGGTGTGCATTTAAATTTCATTTTTCTGCCTGTAAATGTGAGTTTCAGCGGTGTTTTCAATGTCTGAAAATTATTTGCAATTTCCAGCCATCATACAAAACTGGTCTGGGCATTAAACTATGAAAATTTGACTTGAAAACCGGGTTGGGT
TGATTCTCAGAAAACTTTCAAGGAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
Intron 2 GTCAGTTCTG ... TGATTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.73 | 37 | 32 | 21 |
| A2 | 47.5 | 21 | 23 | 15 |
| A3 | 38.33 | 37 | 32 | 14 |
| A4 | 36.36 | 35 | 27 | 13 |
| A5 | 38.89 | 11 | 13 | 1 |
| A6 | 27.74 | 56 | 29 | 14 |
| A7 | 33.82 | 90 | 59 | 33 |
| A8 | 34.21 | 100 | 50 | 54 |
| A9 | 24.48 | 91 | 41 | 18 |
| A10 | 35.06 | 50 | 31 | 23 |
>TRINITY_DN40932_c1_g4_i3 from sample A9 / Example spliced isoformCTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGAAAACTTTCAAGGAGTCTGC
TGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
>TRINITY_DN40932_c1_g4_i9 from sample A9 / Example unspliced isoform:CTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGgtcagttctgtgaacattca
atgttgaatggttgttttattttccttaagaaagaagtctaataatctactattaacttcctctttatgtggtcaagggtttaggaggattttgtgttaacaaatagagaagtggagaagttttcaaacatggaaacttatatttatgagcatcacctctttctgtgttctggaagcacctgtaaacatttcttgttttt
gtaagtttctgctggggcattcatggaactttttggttctcacccctcaaaatatgcttttgagcagtttctggatttttaggtggtgccgtcgtgttgtcaagctagggggaaactttaaaatgactaaaatgaaagtagaaaaacaaagataattttttcctgggaaattattatcattaaaatatctctttcaggtt
ctttgtgttcacatgtttaatttatgcaaattcatgttaaatcttttatatcactgctgccttgtttttgtaaagggatttacctagagagtttattgaaaaattaaaaactgtcttctttttttgaaaatagatttccctaaggagttgattaaaaatttaagaagtcatttgcttgtttctgttgggttaatttccac
tcaacagctttgagaaagatgagcattgtactaaagatgcattgatcacgtgctaatctgtcttatgtggatggatttgacatggttgttgatgaggattaatctagctgaataaacacatgatttgtttcttctagccaatcttatctacctacccatcctaatcctatcatcacttccaactttgtttcttcaaccac
ttatatgcaaaacatagacaatttaaatctctctggattttgctttgaaatcctatttttggttgaaattagccaaattcaaagtgtcttcatgctatacttttctaatttttttctagacattgatactattgtacaaccacaacaaaattgcttataacttttgctgtgctgaaaattttgttgaggcttgtggtggc
tcctagtagcatatagctgtaatgtccctttccgcatgatcactcgaggggatgacttactagcctattttattcctgtaggctatagttgacgagaaaatgaattaaataattatttaatgtcaaatggggcaaaaagtaacattggaagtgacattaagtaattatttaaaaaatggactttatgaaaagtcacttta
tttaattaaaagcgggaaatggtgtaagtggccaaaaagggtaaaaaatgcataaaagggaaaagtgacccattctctcattcatcatgtcattttcactttcgaaaaataaatttggagagctcttttgactttttctctcgggagagaaacccaaagagaacatcagttttggtggtgaaactatccactctagtcaa
tcaagttggagagatcaggtagatttttcactgatattcgtggttgaagacagtgataaaccattttgtgtaaaaacgtggtgcatttcagagttttgaaggctgtttacagagggtgcacttgtcaaatgaaagcgtactagtactttcttgcaactgctgcaacatattgccgtggagtggacgagttgactgtagaa
aggtgccttgcttctaagagggacgatttgactgttaagtgacccaagtgtggtgaaaaaaaaggagggcgtattcttcattgtgggggctgcaaacccttgtggaggcagcgtgcaattctgagaactgtgtgcttatctgtgggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatc
tctgtgggtgattataaggagaagtctgctgatatatttcttacctgagaggatgtttagaggagagacagtctgctacaggctgctgggcacatgctctgtggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatctctgtgggtgattataaggaggagtgttgaattttgtaccta
ggagagtgttcccctaggtgacttttgccttagtcacttaaaaaggggaaataaagtgactcttgcattaaatgactcgagataagcatttaacttaactttagagattaaagttactttttgataaatttaagtgaagtgagtgaaattaattttcatgagaattaaatgtgcatttattctcatccactcatctaaac
caatctgagcctttggattagatggctttttactcaccctaggttttcactcaaaaaggcaagggaaggcatttagacattatcttcttgttgttggagaagaagaaaagagagagcagagagagggcacaattttctaggcagccgtacagggcaattaatgcagcagcacgattcctgaggcagagagaaaagtacag
cagcacgaacccgaggccatagagcagaaaaggtgggcacagatttcgagaagaaatctgggcgtgaatcctgaggcagtgggcacggtttcccagacaaatttctgggtgcattttctgaggcagtgggcacatttttcgaggccatacacagcacagttttcgagaaaagtacaggcacattttttgaggacagtata
gtgcgtacctgtccattctggcacattttttgagatgctgggtttgcacagaaatcgaggcagtttgcagcacgcttttcgaggcagcctgtgggtgaatttttcggtggagataagttgtatcttgactgtaaatttgctgttctgaatttttcctgaagaaataaaatcatctctctctaacaggttttctccttgtg
ggtttttcctgggcaattttgccaaaaatttatgaggctgaaatattttatggtgtgcatttaaatttcatttttctgcctgtaaatgtgagtttcagcggtgttttcaatgtctgaaaattatttgcaatttccagccatcatacaaaactggtctgggcattaaactatgaaaatttgacttgaaaaccgggttgggt
tgattctcagAAAACTTTCAAGGAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
Intron 3 GTCAGTTCTG ... TGCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.98 | 8 | 12 | 13 |
| A2 | 80 | 2 | 13 | 3 |
| A3 | 72.41 | 4 | 15 | 6 |
| A4 | 74.19 | 4 | 14 | 9 |
| A5 | 57.14 | 3 | 3 | 5 |
| A6 | 100 | 0 | 0 | 5 |
| A7 | 76.19 | 5 | 16 | 16 |
| A8 | 68.75 | 5 | 4 | 18 |
| A9 | 70 | 3 | 6 | 8 |
| A10 | 81.82 | 2 | 5 | 13 |
>TRINITY_DN48295_c9_g1_i1 from sample A7 / Example spliced isoformAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGAGTTTTGAAGGCTGTTTACAGAGGGTGCACTTGTCAAATGAAAGCGTACTAGTACTTTCTTGCAACTGCTGCAACATATTGCCGTGGAGTGGACGAGTTGACTGTAGAAAGGTGCCTTGCTTCTA
AGAGGGACGATTTGACTGTTAAGTGACCCAAGTGTGGTGAAAAAAAAGGAGGGCGTATTCTTCATTGTGGGGGCTGCAAACCCTTGTGGAGGCAGCGTGCAATTCTGAGAACTGTGTGCTTATCTGTGGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATA
AGGAGAAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTT
>TRINITY_DN48295_c9_g1_i2 from sample A7 / Example unspliced isoform:AGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGgtcagttctgtgaacattcaatgttgaatggttgttttattttccttaagaaagaagtctaataatctactattaacttcctctttatgtggtcaagggtttaggaggattttgtgttaacaaat
agagaagtggagaagttttcaaacatggaaacttatatttatgagcatcacctctttctgtgttctggaagcacctgtaaacatttcttgtttttgtaagtttctactggggcattcatggaactttttggttctcacccctcaaaatatgcttttgagcagtttctggatttttgggtggtgccgtcgtgttgtcaagc
tagggggaaactttaaaatgactaaaatgaaagtagaaaaacaaagataattttttcctgggaaattattatcattaaaatatctctttcaggttctttgtgttcacatgtttaatttatgcaaattcatgttaaatcttttatatcactgctgccttgtttttgtaaagggatttacctagagagtttattgaaaaatt
aaaaactgtcttctttttttgaaaatagatttccccaaggagttgattaaaaatttaagaagtcatttgcttgtttcagttgggttaatttccactcaacagctttgagaaagatgagcattgtactaaagatgcattgatcacgtgctaatctgtcttatgtggatggatttgacatggttgttgatgaggattaatct
agctgaataaacacatgatttgtttcttctagccaatcttatctacctacccatcctaatcctatcatcacttccaactttgtttcttcaaccacttatatgcaaaacatagacaatttaaatctctctggattttgctttgaaatcctatttttggttgaaattagccaaattcaaagtgtcttcatgctatacttttc
taatttttttctagacattgatactattgtacaaccacaacaaaattgcttataacttttgctatgctgaaaattttgttgaggcttgtggtggctcctagtagcatatagctgtaatgtccctttccgcatgatcactcgaggggatgacttactagcctattttattcctgtaggctatagtcgacgaaaaaatgaat
taaataattatttaatgtcaaatggggcaaaaagtaacattgaaagtgacattaagtaattatttaaaaaatggactttatgaaaagtcactttatttaattaaaagcgggaaatggtgtaagtggtcaaaaagggtaaaaaatgcataaaagggaaaagtgacccattctctcattcatcatgtcattttcactttcga
aaaataaatttggagagctcttttgactttttctctcgggagagaaacccaaagagaacatcagttttggtggtgaaactatccactctagtcaatcaagttggagagatcaggtagatttttcactgatattcgtggttgaagacagtgataaaccattttgtgtaaaaacgtggtgcatttcagAGTTTTGAAGGCTG
TTTACAGAGGGTGCACTTGTCAAATGAAAGCGTACTAGTACTTTCTTGCAACTGCTGCAACATATTGCCGTGGAGTGGACGAGTTGACTGTAGAAAGGTGCCTTGCTTCTAAGAGGGACGATTTGACTGTTAAGTGACCCAAGTGTGGTGAAAAAAAAGGAGGGCGTATTCTTCATTGTGGGGGCTGCAAACCCTTGTGG
AGGCAGCGTGCAATTCTGAGAACTGTGTGCTTATCTGTGGGGGCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATAAGGAGAAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTAGAGGAGAGACAGTCTGCTACAGGCTGCTGGGCACATGCTCTGTGGG
GCAGAGTTTCACTTGTTTGGTGGCCACATTTTCTTGTGAGGAGGGCACAAATCTCTGTGGGTGATTATAAGGAGGAGTGTTGAATTTTGTACCTAGGAGAGTGTTCCCCTAGGTGACTTTTGCCTTAGTCACTTAAAAAGGGGAAATAAAGTGACCCTTGCATTAAATGACTCGAGATAAGCATTTAACTTAACTTTAGA
GATTAAAGTTACTTTTTGATAAATTTAAGTGAGGTC
Intron 4 GTCAGTTCTG ... TGATTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.73 | 37 | 32 | 21 |
| A2 | 47.5 | 21 | 23 | 15 |
| A3 | 38.33 | 37 | 32 | 14 |
| A4 | 36.36 | 35 | 27 | 13 |
| A5 | 38.89 | 11 | 13 | 1 |
| A6 | 27.74 | 56 | 29 | 14 |
| A7 | 33.82 | 90 | 59 | 33 |
| A8 | 34.21 | 100 | 50 | 54 |
| A9 | 24.48 | 91 | 41 | 18 |
| A10 | 35.06 | 50 | 31 | 23 |
>TRINITY_DN40932_c1_g4_i3 from sample A9 / Example spliced isoformCTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGAAAACTTTCAAGGAGTCTGC
TGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
>TRINITY_DN40932_c1_g4_i7 from sample A9 / Example unspliced isoform:CTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGgtcagttctgtgaacattca
atgttgaatggttgttttattttccttaagaaagaagtctaataatctactattaacttcctctttatgtggtcaagggtttaggaggattttgtgttaacaaatagagaagtggagaagttttcaaacatggaaacttatatttatgagcatcacctctttctgtgttctggaagcacctgtaaacatttcttgttttt
gtaagtttctgctggggcattcatggaactttttggttctcacccctcaaaatatgcttttgagcagtttctggatttttaggtggtgccgtcgtgttgtcaagctagggggaaactttaaaatgactaaaatgaaagtagaaaaacaaagataattttttcctgggaaattattatcattaaaatatctctttcaggtt
ctttgtgttcacatgtttaatttatgcaaattcatgttaaatcttttatatcactgctgccttgtttttgtaaagggatttacctagagagtttattgaaaaattaaaaactgtcttctttttttgaaaatagatttccctaaggagttgattaaaaatttaagaagtcatttgcttgtttctgttgggttaatttccac
tcaacagctttgagaaagatgagcattgtactaaagatgcattgatcacgtgctaatctgtcttatgtggatggatttgacatggttgttgatgaggattaatctagctgaataaacacatgatttgtttcttctagccaatcttatctacctacccatcctaatcctatcatcacttccaactttgtttcttcaaccac
ttatatgcaaaacatagacaatttaaatctctctggattttgctttgaaatcctatttttggttgaaattagccaaattcaaagtgtcttcatgctatacttttctaatttttttctagacattgatactattgtacaaccacaacaaaattgcttataacttttgctgtgctgaaaattttgttgaggcttgtggtggc
tcctagtagcatatagctgtaatgtccctttccgcatgatcactcgaggggatgacttactagcctattttattcctgtaggctatagttgacgagaaaatgaattaaataattatttaatgtcaaatggggcaaaaagtaacattggaagtgacattaagtaattatttaaaaaatggactttatgaaaagtcacttta
tttaattaaaagcgggaaatggtgtaagtggccaaaaagggtaaaaaatgcataaaagggaaaagtgacccattctctcattcatcatgtcattttcactttcgaaaaataaatttggagagctcttttgactttttctctcgggagagaaacccaaagagaacatcagttttggtggtgaaactatccactctagtcaa
tcaagttggagagatcaggtagatttttcactgatattcgtggttgaagacagtgataaaccattttgtgtaaaaacgtggtgcatttcagagttttgaaggctgtttacagagggtgcacttgtcaaatgaaagcgtactagtactttcttgcaactgctgcaacatattgccgtggagtggacgagttgactgtagaa
aggtgccttgcttctaagagggacgatttgactgttaagtgacccaagtgtggtgaaaaaaaaggagggcgtattcttcattgtgggggctgcaaacccttgtggaggcagcgtgcaattctgagaactgtgtgcttatctgtgggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatc
tctgtgggtgattataaggagaagtctgctgatatatttcttacctgagaggatgtttagaggagagacagtctgctacaggctgctgggcacatgctctgtggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatctctgtgggtgattataaggaggagtgttgaattttgtaccta
ggagagtgttcccctaggtgacttttgccttagtcacttaaaaaggggaaataaagtgactcttgcattaaatgactcgagataagcatttaacttaactttagagattaaagttactttttgataaatttaagtgaagtgagtgaaattaattttcatgagaattaaatgtgcatttattctcatccactcatctaaac
caatctgagcctttggattagatggctttttactcaccctaggttttcactcaaaaaggcaagggaaggcatttagacattatcttcttgttgttggagaagaagaaaagagagagcagagagagggcacaattttctaggcagccgtacagggcaattaatgcagcagcacgattcctgaggcagagagaaaagtacag
cagcacgaacccgaggccatagagcagaaaaggtgggcacagatttcgagaagaaatctgggcgtgaatcctgaggcagtgggcacggtttcccagacaaatttctgggtgcattttctgaggcagtgggcacatttttcgaggccatacacagcacagttttcgagaaaagtacaggcacattttttgaggacagtata
gtgcgtacctgtccattctggcacattttttgagatgctgggtttgcacagaaatcgaggcagtttgcagcacgcttttcgaggcagcctgtgggtgaatttttcggtggagataagttgtatcttgactgtaaatttgctgttctgaatttttcctgaagaaataaaatcatctctctctaacaggttttctccttgtg
ggtttttcctgggcaattttgccaaaaatttatgaggctgaaatattttatggtgtgcatttaaatttcatttttctgcctgtaaatgtgagtttcagcggtgttttcaatgtctgaaaattatttgcaatttccagccatcatacaaactggtctgggcattaaactatgaaaatttgacttgaaaaccgggttgggtt
gattctcagAAAACTTTCAAGGAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
Intron 5 GTCAGTTCTG ... TGATTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.73 | 37 | 32 | 21 |
| A2 | 47.5 | 21 | 23 | 15 |
| A3 | 38.33 | 37 | 32 | 14 |
| A4 | 36.36 | 35 | 27 | 13 |
| A5 | 38.89 | 11 | 13 | 1 |
| A6 | 27.74 | 56 | 29 | 14 |
| A7 | 33.82 | 90 | 59 | 33 |
| A8 | 34.21 | 100 | 50 | 54 |
| A9 | 24.48 | 91 | 41 | 18 |
| A10 | 35.06 | 50 | 31 | 23 |
>TRINITY_DN40932_c1_g4_i3 from sample A9 / Example spliced isoformCTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGAAAACTTTCAAGGAGTCTGC
TGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC
>TRINITY_DN40932_c1_g4_i5 from sample A9 / Example unspliced isoform:CTTCACAATGATATCAAGGATCAACTGTATAAAGTGGCATCCATGACTCCTTGTTCCAACATTTCTGGTCAGATACTTGCAAGTCTTGTAATGAATCCCCCAAAGAGTGGAGATGCATCATTTGAAATGTTCTGTGCGGAAAGGGATGGTATTCTTTCATCACTTGCAAGGCGTGCAAAGgtcagttctgtgaacattca
atgttgaatggttgttttattttccttaagaaagaagtctaataatctactattaacttcctctttatgtggtcaagggtttaggaggattttgtgttaacaaatagagaagtggagaagttttcaaacatggaaacttatatttatgagcatcacctctttctgtgttctggaagcacctgtaaacatttcttgttttt
gtaagtttctgctggggcattcatggaactttttggttctcacccctcaaaatatgcttttgagcagtttctggatttttaggtggtgccgtcgtgttgtcaagctagggggaaactttaaaatgactaaaatgaaagtagaaaaacaaagataattttttcctgggaaattattatcattaaaatatctctttcaggtt
ctttgtgttcacatgtttaatttatgcaaattcatgttaaatcttttatatcactgctgccttgtttttgtaaagggatttacctagagagtttattgaaaaattaaaaactgtcttctttttttgaaaatagatttccctaaggagttgattaaaaatttaagaagtcatttgcttgtttctgttgggttaatttccac
tcaacagctttgagaaagatgagcattgtactaaagatgcattgatcacgtgctaatctgtcttatgtggatggatttgacatggttgttgatgaggattaatctagctgaataaacacatgatttgtttcttctagccaatcttatctacctacccatcctaatcctatcatcacttccaactttgtttcttcaaccac
ttatatgcaaaacatagacaatttaaatctctctggattttgctttgaaatcctatttttggttgaaattagccaaattcaaagtgtcttcatgctacttttctaatttttttctagacattgatactattgtacaaccacaacaaaattgcttataacttttgctgtgctgaaaattttgttgaggcttgtggtggctc
ctagtagcatatagctgtaatgtccctttccgcatgatcactcgaggggatgacttactagcctattttattcctgtaggctatagtcgacgaaaaaatgaattaaataattatttaatgtcaaatggggcaaaaagtaacattggaagtgacattaagtaattatttaaaaaatggactttatgaaaagtcactttatt
taattaaaagcgggaaatggtgtaagtggccaaaaagggtaaaaaatgcataaaagggaaaagtgacccattctctcattcatcatgtcattttcactttcgaaaaataaatttggagagctcttttgactttttctctcgggagagaaacccaaagagaacatcagttttggtggtgaaactatccactctagtcaatc
aagttggagagatcaggtagatttttcactgatattcgtggttgaagacagtgataaaccattttgtgtaaaaacgtggtgcatttcagagttttgaaggctgtttacagagggtgcacttgtcaaatgaaagcgtactagtactttcttgcaactgctgcaacatattgccgtggagtggacgagttgactgtagaaag
gtgccttgcttctaagagggacgatttgactgttaagtgacccaagtgtggtgaaaaaaaaggagggcgtattcttcattgtgggggctgcaaacccttgtggaggcagcgtgcaattctgagaactgtgtgcttatctgtgggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatctc
tgtgggtgattataaggagaagtctgctgatatatttcttacctgagaggatgtttagaggagagacagtctgctacaggctgctgggcacatgctctgtggggcagagtttcacttgtttggtggccacattttcttgtgaggagggcacaaatctctgtgggtgattataaggaggagtgttgaattttgtacctagg
agagtgttcccctaggtgacttttgccttagtcacttaaaaaggggaaataaagtgactcttgcattaaatgactcgagataagcatttaacttaactttagagattaaagttactttttgataaatttaagtgaagtgagtgaaattaattttcatgagaattaaatgtgcatttattctcatccactcatctaaacca
atctgagcctttggattagatggctttttactcaccctaggttttcactcaaaaaggcaagggaaggcatttagacattatcttcttgttgttggagaagaagaaaagagagagcagagagagggcacaattttctaggcagccgtacagggcaattaatgcagcagcacgattcctgaggcagagagaaaagtacagca
gcacgaacccgaggccatagagcagaaaaggtgggcacagatttcgagaagaaatctgggcgtgaatcctgaggcagtgggcacggtttcccagacaaatttctgggtgcattttctgaggcagtgggcacatttttcgaggccatacacagcacagttttcgagaaaagtacaggcacattttttgaggacagtatagt
gcgtacctgtccattctggcacattttttgagatgctgggtttgcacagaaatcgaggcagtttgcagcacgcttttcgaggcagcctgtgggtgaatttttcggtggagataagttgtatcttgactgtaaatttgctgttctgaatttttcctgaagaaataaaatcatctctctctaacaggttttctccttgtggg
tttttcctgggcaattttgccaaaaatttatgaggctgaaatattttatggtgtgcatttaaatttcatttttctgcctgtaaatgtgagtttcagcggtgttttcaatgtctgaaaattatttgcaatttccagccatcatacaaactggtctgggcattaaactatgaaaatttgacttgaaaaccgggttgggttga
ttctcagAAAACTTTCAAGGAGTCTGCTGATATATTTCTTACCTGAGAGGATGTTTGGAGGAGAGGCAGTCTGCTACAGGCTGCTAGGCACATGCTCTGGGATCAGTTTCCTC