NA ----> NA

Intron 1 GCTATCTTGG ... ACAACAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.76	59	63	30
A2	49.66	48	58	41
A3	43.02	82	84.5	50
A4	53.09	42	55	44.5
A5	38.06	33	32	15
A6	57.9	58	95	72.5
A7	47.55	97	122.5	63
A8	46.31	115	120	86.5
A9	43.64	117	118	74
A10	40.87	100	84	60.5

>TRINITY_DN48872_c0_g2_i12 from sample A7 / Example spliced isoform

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCGTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCATGCGGAAGAGTTATTT
CTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGATGCTAATTTTTGGC

>TRINITY_DN48872_c0_g2_i2 from sample A7 / Example unspliced isoform:

CCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCgctatcttggtcagggcatatcctctggaagtacattcatatgctctttagtcaatggcttcagtatttcaggtatacaacttaattggcttgcatcagcagatttttcacaaccattggtcatggacaacaacagGTATGCAATTCTAGAAATATTCC
TCTAGCCAAAGTTCCACAAAAGTTCCATTTTCACAAGGAAGAGTTATTTTCATGCGGAAGAGTTATTTCTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGATGCTAATTTTTGGC

Intron 2 GCTATCTTGG ... AGTATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	53.91	59	96	42
A2	50.26	48	73	24
A3	50.3	82	125	41
A4	58.21	42	90	27
A5	50	33	55	11
A6	60.94	58	128	53
A7	58.1	97	171	98
A8	55.77	115	195	95
A9	52.73	117	187	74
A10	50.25	100	138	64

>TRINITY_DN48872_c0_g2_i12 from sample A7 / Example spliced isoform

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCGTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCATGCGGAAGAGTTATTT
CTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGATGCTAATTTTTGGC

>TRINITY_DN48872_c0_g2_i3 from sample A7 / Example unspliced isoform:

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAGCCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCgctatcttggtcagggcatatcctctggaagtacattcatatgctctttagtcaatggcttcagtatttcag


GTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCACAAGGAAGAGTTATTTTCATGCGGAAGAGTTATTTCTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGA
TGCTAATTTTTGGC

Intron 3 GCAATGGAGT ... ATTTCAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.84	121	153	46
A2	50.69	107	110	17
A3	54.83	117	142	44
A4	60.25	97	147	40
A5	54.46	46	55	24
A6	48.35	94	88	42
A7	56.73	119	156	31
A8	60.71	66	102	26
A9	67	98	199	57
A10	66.14	86	168	40

>TRINITY_DN117781_c1_g1_i7 from sample A1 / Example spliced isoform

ATTTTAAGACAAATCAGACCGTTGGAGAAGTTTCATTTCACGGTCTCGTTTTTCGCAGTGCGGAGACATACAAAGGTTTTCACTGCACAAATCCGTCTCATCTTGCGGTTGAGCAATGGCGCGATTTCAGCACAGAGAAATCTGTTTTTGTCCATTTCATCTTGTGGTAGGGCAATGGAGCGATTTTGTCCATCTCATCT
TGTGGTAGGCAATGGAGCGATTTCAACAGAGGAATCCGTTTTTGTCCTTCTCATCTTGTGGTAGGGGAATGGAGCGATTTCAGCTCAGGGAAATCTGTATGATTTTCGTTGTGCGGAGACATACAAAGTCTTCAAAATCACGACGACACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGGTTGTTCTC
TGCCCCTCATTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCAGTACTCTCGTGGTAGGGAAATGTAGCGATTTCAGCACATAGAATTTCTTCAAAATCATGACGGCATGGCATCATTGGAAAGTGTGGGAAATTGTTTATCAAGTGAGGGTTTGTGGTAGGGCAATGTAGCGATTTCAGCACGGAGAATGTTTTCAA
AATCACGACGGTACGACATCATTGAAAATTGTCGG

>TRINITY_DN117781_c1_g1_i11 from sample A1 / Example unspliced isoform:

ATTTTAAGACAAATCAGACCGTTGGAGAAGTTTCATTTCACGGTCTCGTTTTTCGCAGTGCGGAGAGCGGAGACATACAATTTTAAGACAAATCAGACCGTTGGAGAAGTTTCATTTCACAAGGCTTTCACTGCAGAAATCCGTGGTCTCGTTTTTCGCAGTGCGGAGACTTAGAAAGGTTTTCACTGCACAAATAAATC
CATCTCATCTTGCGGTAGAGCAATGGCGCGATTTCAACACAGAGAAATCCGTTTTTGTCCATCTCATCTTGTGGTAGGgcaatggagtgatttcagcatagagaagtccggttttgtccatcttatcttgcggtagggcaatggagcgatttcaacataggcaatggagcgattttgtccatctcatcttgtggtaggca
atggagcgatttcaacagCAATGGAGCGATTTCAGCACCAGAGGAATCCGTTTTTGTCCTTCTCATCTTGTGGTAGGGGAATGGAGCGATTTCAGCTCAGGGAAATCTGTATGATTTTCGTTGTGCGGAGACATACAAAGTCTTCAAAATCACGACGACACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAA
GGGGTTGTTCTCTGCCCCTCATTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCAGTACTCTCGTGGTAGGGAAATGTAGCGATTTCAGCACATAGAATTTCTTCAAAATCATGACGGCATGGCATCATTGGAAAGTGTGGGAAATTGTTTATCAAGTGAGGGTTTGTGGTAGGGCAATGTAGCGATTTCAGCACGGA
GAATGTTTTCAAAATCACGACGGTACGACATCATTGAAAATTGTCGG

Intron 4 GTATACAACT ... ACAACAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	51.72	42	57	33
A2	69.03	24	63	44
A3	55.91	41	58	46
A4	66.04	27	58	47
A5	56.86	11	16	13
A6	62.01	53	101	72
A7	45.71	98	101	64
A8	51.41	95	112	89
A9	53.75	74	96	76
A10	50.39	64	71	59

>TRINITY_DN48872_c0_g2_i3 from sample A7 / Example spliced isoform

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAGCCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCGCTATCTTGGTCAGGGCATATCCTCTGGAAGTACATTCATATGCTCTTTAGTCAATGGCTTCAGTATTTCAG


GTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCACAAGGAAGAGTTATTTTCATGCGGAAGAGTTATTTCTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGA
TGCTAATTTTTGGC

>TRINITY_DN48872_c0_g2_i2 from sample A7 / Example unspliced isoform:

CCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCGCTATCTTGGTCAGGGCATATCCTCTGGAAGTACATTCATATGCTCTTTAGTCAATGGCTTCAGTATTTCAGgtatacaacttaattggcttgcatcagcagatttttcacaaccattggtcatggacaacaacagGTATGCAATTCTAGAAATATTCC
TCTAGCCAAAGTTCCACAAAAGTTCCATTTTCACAAGGAAGAGTTATTTTCATGCGGAAGAGTTATTTCTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGATGCTAATTTTTGGC

Intron 5 GCTATCTTGG ... AGTATTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.29	59	146	76
A2	62.35	48	99	60
A3	56.15	82	144	66
A4	66.27	42	118	47
A5	57.96	33	68	23
A6	74.84	58	200	145
A7	64.92	97	222	137
A8	62.9	115	249	141
A9	61.45	117	250	123
A10	59.51	100	173	121

>TRINITY_DN48872_c0_g2_i12 from sample A7 / Example spliced isoform

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCGTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCATGCGGAAGAGTTATTT
CTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTATTCTGATGCTAATTTTTGGC

>TRINITY_DN48872_c0_g2_i5 from sample A7 / Example unspliced isoform:

GTACGACATCATTGAAAATTGTCGGAAATTGTTTATCAAGAAAGGGTTTATTCTCTGCCCCTCGTTTCCACTTCTCAGCCGGAGAAACCCTGAAGAAGCGGTACACCGAGGGTTGTTTCCAAATCTGCgctatcttggtcagggcagatcatctggaagttggtcagggcagatcatctggaagtacattcatatgctct
ttagtcaatggcttcagtatttcagGTATGCAATTCTAGAAATATTCCTCTAGCCAAAGTTCCACAAAAGTTCCATTTTCATGCGGAAGAGTTATTTCTGACTCATCGAGGAGAATATTATCAAGCTTTTCCACAGGTATTCTACGGAAGAGTTATTTCTGACTCATTGAGGAGAATATTGTCAAGCTTTTCCACAGGTA
TTCTGATGCTAATTTTTGGC