sp|Q8L5V0|RPB9B_ARATH ----> DNA-directed RNA polymerases II, IV and V subunit 9B

Intron 1 GTCAGTATTC ... GCATATGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52.63	18	0	20
A2	41.86	25	4	18
A3	18.75	13	6	3
A4	45.83	13	0.7	11
A5	25	9	0	3
A6	31.58	91	0	42
A7	31.97	100	5	47
A8	31.48	74	0	34
A9	31.68	110	0.3	51
A10	31.68	69	2	32

>TRINITY_DN79357_c0_g1_i2 from sample A4 / Example spliced isoform

CATCTGTTGACTATCGTTTTATTTGAAGGTACAACGAATTTATTGCGATTTCTGACCTTGCAAGAGCAAGAAGAGTAGGGAGCGCTTTCACTCGTTTGGCTTCCTGTTTTGGAATAGCCATGGAATTCTGCCCCACCTGTGGAAACTTGCTACAAATTGAGCATCCGCAAATGAGTCAGAGTTTGCGTTTTTTCTGTCCC
ACTTGCCCATATGTATTTCCTATTGAACGCAAGATTAGCAAGAAACTTCAGCTGAAAAAAAAGGAGGTAGATGACGTATTTGGTGGAGAGGAAGCATGGAAAAATGTTGACCGCACAGAAGCAACTTGCCCTAAATGCAGTTTTGGTAAAGCATTCTTCATGCAAATTCAGATAAGATCAGCTGATGAGCCAATGTCGAC
TTTCTACAAGTGTTGCAATAATCAATGCCAATTCACGTGGCGACAGGATTGAGATCTGCTGCACTGCATTGCACTGTTTATTCTTCTTATATGAGCACTGAGTAAAGCTTTGTGATGGTTCTAAGAAACTAAGTAAAATAGAATAACAGTTGTAGTTTTATGGATGATATCTATGGAATAACAGTTATAGTTATCTGTCA
AAACTTCTGATGGGGATTTCTGTCAAACTTAGTTGACAATGAAAATGCATGAACCATTCTCTGTCATTCACTTTTCAGCGTTCACTGCGCAGGTGCTTACTAATAGTAGTAGTTAGAACCCGTAGGTCTGATTTGCCTCCCCTTGCAGTGAACCACTTCTCTTATGCCAGTGGCGTGCCTTCTTTACTGCTGAAAATTCC
TCCTCCATGAGCATATTAAAACAGTTCACTTTAATGCCTGCATACAAAATTGTGTATACTATTGGTAGTGTAGTCTTTTACAACAAGGCAGGTTTGTGGGCATCTGATGATGCTAAAAATAATTCCTCATATTGTAACTCAAAACATGGATTGATCAAGAAAGTAATGATGCTTGGTTACTGC

>TRINITY_DN79357_c0_g1_i3 from sample A4 / Example unspliced isoform:

ACTCGTTTGGCTTCCTGTTTTGGgtcagtattctactaactcaaaactaattatgcaatttggtctatgattccaatgcacgagcattcagaagaaactccgtttttttaaattcgtttagtgcccttgaatttgacatagacttatataaggccgattccgacttgcatatgaagAATAGCCATGGAATTCTGCCCCAC
CTGTGGAAACTTGCTACAAATTGAGCATCCGCAAATGAGTCAGAGTTTGCGTTTTTTCTGTCCCACTTGCCCATATGTATTTCCTATTGAACGCAAGATTAGCAAGAAACTTCAGCTGAAAAAAAAGGAGGTAGATGACGTATTTGGTGGAGAGGAAGCATGGAAAAATGTTGACCGCACAGAAGCAACTTGCCCTAAAT
GCAGTTTTGGTAAAGCATTCTTCATGCAAATTCAGATAAGATCAGCTGATGAGCCAATGTCGACTTTCTACAAGTGTTGCAATAATCAATGCCAATTCACGTGGCGACAGGATTGAGATCTGCTGCACTGCATTGCACTGTTTATTCTTCTTATATGAGCACTGAGTAAAGCTTTGTGATGGTTCTAAGAAACTAAGTAA
AATAGAATAACAGTTGTAGTTTTATGGATGATATCTATGGAATAACAGTTATAGTTATCTGTCAAAACTTCTGATGGGGATTTCTGTCAAACTTAGTTGACAATGAAAATGCATGAACCATTCTCTGTCATTCACTTTTCAGCGTTCACTGCGCAGGTGCTTACTAATAGTAGTAGTTAGAACCCGTAGGTCTGATTTGC
CTCCCCTTGCAGTGAACCACTTCTCTTATGCCAGTGGCGTGCCTTCTTTACTGCTGAAAATTCCTCCTCCATGAGCATATTAAAACAGTTCACTTTAATGCCTGCATACAAAATTGTGTATACTATTGGTAGTGTAGTCTTTTACAACAAGGCAGGTTTGTGGGCATCTGATGATGCTAAAAATAATTCCTCATATTGTA
ACTCAAAACATGGATTGATCAAGAAAGTAATGATGCTTGGTTACTGC