NA ----> NA
Intron 1 GTTCCTGAAT ... GCTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.4 | 28 | 44 | 53 |
| A2 | 75 | 15 | 45 | 45 |
| A3 | 60 | 16 | 28 | 20 |
| A4 | 85.71 | 5 | 33 | 27 |
| A5 | 77.27 | 5 | 22 | 12 |
| A6 | 72.14 | 50 | 132 | 127 |
| A7 | 67.3 | 69 | 152 | 132 |
| A8 | 74.75 | 38 | 123 | 102 |
| A9 | 69.41 | 52 | 126 | 110 |
| A10 | 67.86 | 45 | 103 | 87 |
>TRINITY_DN99406_c0_g1_i2 from sample A3 / Example spliced isoformTTTTTATGGGCCGCGTCCCCCCTTTGGCCTGGTAGCGACTGCATGTCACCATAAACGTTCTATAAAACTGTTGACGACCTGTCCTGTCTGTCAATAAGGACTACTGAAGGAGAGCGAAGTTCCTAATATTGCATGCACATGGACATGGAAATAATCCAGACTGTTATGTTGAAAGCTGGGGGCGAGGGGACTGTTAGCTG
AGCAGGCATTTGATATTATATATAATGCGATTATCAAGGCGATCACTGTTAGATTGGGTGAAGATGTAAGTGAAAATGGTGAGTATGCAATTATGCTCAGCTCCGGCCTTAGCTCTATCTCCATCTCTAAAGAATGGGCATGCATCGTGGAGCAACAAGGCGGCGAGGCAAGTGGGCAGGGTGGGAGTGAGAGTGAGAGC
AATTTCATCAGCAGAAGCAGAAGAAGAAAGCAGCTTTGGAGTGGTATTCGGGGCAGGGGGAACGGGAGGCCATGTGTATCCAGCCATCGCCATAGCGGATGAGATGAAGGCGATCATGAGTCCCACTATCAACTTACAAATCCACTTCGTCGGCACTAAGAACAGATTGGAATGGAAGGCAGTCCCGGCCGCCGGATACG
AAATACTCCCAATTCCAGCAGTGGGTTTGAAGCGCCCGATCCTCTCCCCAACAAATTTGTTGTTACCATTCAAACTCCTGCATTGCTTGTGGGAATGCTGGAAAATACTGGGTGAATTGCGACCTCATGTGGTGGTGGGAACGGGGGGCTATGTAGCTGCTCCCATTTGCTTCATGGCTTTCATCAGGGGCATCCCTGTG
GCTATACAAGAGCAGAATGTGTCCCCCGGCATAGCAAATAAAATTCTGGGGATGCTGGCAACGATGGTGTTTGTGGCGTTTCCTTCATCGATTGATTTTTTCCCCAAAGACAAGTGCGTCATCAGCGGCAATCCCATACGCCCTGCATTAAGAAAATATGTGTCGAATGCGGTTGCCCGATCGCATTTCTTTCCAAGGGG
TTCACAGCTTTCCAATAGCCAACTGCTACTTATTCTCGGGGGTTCATTGGGTGCAAATTCCATCAACATTGCGGTGTTAGGGATGTACTCCCAGATGCTATCTGAGCATGACAACAGATATATCATTTGGCAAACGGGCATTGACAACTTTGATGAGATGGACAGTCTGGTCAGGGGTCATCCTCGGCTATTCATTACCC
CCGGCAGACCTTGTTATTGCACGAGCTGGTGCAATGACTTGTAGTGAGCTTCTAGCCACAGGAAAACCTTCTATACTGATACCTTCAACAAATGTGGCGGAAAACCATCAGGTGAAAAATGCTACTGTTATGTCTGAGATAGCAGGTGCCAAATTATTGTATGATGATGAGCTTGACTCAACCACACTTGCAGAATCTAT
CAATGACATTTTGGCTGATGAAAAGCTAAGGATGGATATGCATGAAAAGGCCTTAAAAGCAGCTCTACCTGATGCAGCTTCTAAAATTGCAGAATCTGTACTTTCACTTGTAAAAGGTGGCAGTAAAAGCAATTAGTTTTCTCTTGTGAAGTTGACTCGGGTTCAAATCCCAGTGAGAATGCTCTGGTAAAAGTTGCATG
GAGATAGGGTGAAAGTCTCAGCAACCTTTGGCCCACGGTGCAGAGAAAAAGTAAATTAGAGGCCCTGTTTGTGGGCTAACCCCAAATGTTCCTGTTAAAAACAAACAATTAGTTTTCTCTTGTTCGCATATGTATTTGATTAATATAGAGGTTCACATTAAAGTGTGTTGATGATCAAGGGTGCTATTATGGAGTTCTTA
GTCACCTGATTTAGATATTGAAAATAGGGACAATGACAACTGAACAATATATACTCATATATCTCTTCAAGACGTCACTTGATGTTGTCCAAGTGTTCAATGTTGCATGACGATATTGGGGTCGAGGATGGTAATGAGCTACTGTACTGATTTCTTAATTTCAACGGTATTGGATTTTGAAATAAAGCATTACAAATTTA
CAATTTGTGCCAAACTCAATAATAAATGCTTTGTAAGTAACAAAAGCCTTGATATTTAAAAGAAC
>TRINITY_DN99406_c0_g1_i1 from sample A3 / Example unspliced isoform:TTTTTATGGGCCGCGTCCCCCCTTTGGCCTGGTAGCGACTGCATGTCACCATAAACGTTCTATAAAACTGTTGACGACCTGTCCTGTCTGTCAATAAGGACTACTGAAGGAGAGCGAAGTTCCTAATATTGCATGCACATGGACATGGAAATAATCCAGACTGTTATGTTGAAAGCTGGGGGCGAGGGGACTGTTAGCTG
AGCAGGCATTTGATATTATATATAATGCGATTATCAAGGCGATCACTGTTAGATTGGGTGAAGATGTAAGTGAAAATGGTGAGTATGCAATTATGCTCAGCTCCGGCCTTAGCTCTATCTCCATCTCTAAAGAATGGGCATGCATCGTGGAGCAACAAGGCGGCGAGGCAAGTGGGCAGGGTGGGAGTGAGAGTGAGAGC
AATTTCATCAGCAGAAGCAGAAGAAGAAAGCAGCTTTGGAGTGGTATTCGGGGCAGGGGGAACGGGAGGCCATGTGTATCCAGCCATCGCCATAGCGGATGAGATGAAGGCGATCATGAGTCCCACTATCAACTTACAAATCCACTTCGTCGGCACTAAGAACAGATTGGAATGGAAGGCAGTCCCGGCCGCCGGATACG
AAATACTCCCAATTCCAGCAGTGGGTTTGAAGCGCCCGATCCTCTCCCCAACAAATTTGTTGTTACCATTCAAACTCCTGCATTGCTTGTGGGAATGCTGGAAAATACTGGGTGAATTGCGACCTCATGTGGTGGTGGGAACGGGGGGCTATGTAGCTGCTCCCATTTGCTTCATGGCTTTCATCAGGGGCATCCCTGTG
GCTATACAAGAGCAGAATGTGTCCCCCGGCATAGCAAATAAAATTCTGGGGATGCTGGCAACGATGGTGTTTGTGGCGTTTCCTTCATCGATTGATTTTTTCCCCAAAGACAAGTGCGTCATCAGCGGCAATCCCATACGCCCTGCATTAAGAAAATATGTGTCGAATGCGGTTGCCCGATCGCATTTCTTTCCAAGGGG
TTCACAGCTTTCCAATAGCCAACTGCTACTTATTCTCGGGGGTTCATTGGGTGCAAATTCCATCAACATTGCGGTGTTAGGGATGTACTCCCAGATGCTATCTGAGCATGACAACAGATATATCATTTGGCAAACGGGCATTGACAACTTTGATGAGATGGACAGTCTGGTCAGGGGTCATCCTCGGCTATTCATTACCC
CgttcctgaataacatggatttggcttatgcagCGGCAGACCTTGTTATTGCACGAGCTGGTGCAATGACTTGTAGTGAGCTTCTAGCCACAGGAAAACCTTCTATACTGATACCTTCAACAAATGTGGCGGAAAACCATCAGGTGAAAAATGCTACTGTTATGTCTGAGATAGCAGGTGCCAAATTATTGTATGATGAT
GAGCTTGACTCAACCACACTTGCAGAATCTATCAATGACATTTTGGCTGATGAAAAGCTAAGGATGGATATGCATGAAAAGGCCTTAAAAGCAGCTCTACCTGATGCAGCTTCTAAAATTGCAGAATCTGTACTTTCACTTGTAAAAGGTGGCAGTAAAAGCAATTAGTTTTCTCTTGTGAAGTTGACTCGGGTTCAAAT
CCCAGTGAGAATGCTCTGGTAAAAGTTGCATGGAGATAGGGTGAAAGTCTCAGCAACCTTTGGCCCACGGTGCAGAGAAAAAGTAAATTAGAGGCCCTGTTTGTGGGCTAACCCCAAATGTTCCTGTTAAAAACAAACAATTAGTTTTCTCTTGTTCGCATATGTATTTGATTAATATAGAGGTTCACATTAAAGTGTGT
TGATGATCAAGGGTGCTATTATGGAGTTCTTAGTCACCTGATTTAGATATTGAAAATAGGGACAATGACAACTGAACAATATATACTCATATATCTCTTCAAGACGTCACTTGATGTTGTCCAAGTGTTCAATGTTGCATGACGATATTGGGGTCGAGGATGGTAATGAGCTACTGTACTGATTTCTTAATTTCAACGGT
ATTGGATTTTGAAATAAAGCATTACAAATTTACAATTTGTGCCAAACTCAATAATAAATGCTTTGTAAGTAACAAAAGCCTTGATATTTAAAAGAAC