sp|F4IPE3|IDD15_ARATH ----> Zinc finger protein SHOOT GRAVITROPISM 5

Intron 1 GTAAGTTACG ... GTACTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20	2	1	0
A2	22.86	8	4.8	0
A3	100	0	2	0
A4	33.33	2	0	2
A5	33.33	3	2	1
A6	22.58	12	6	1
A7	28	9	6	1
A8	28.95	23	9.5	9.3
A9	27.27	4	1	2
A10	35.29	22	19	5

>TRINITY_DN45277_c0_g2_i3 from sample A8 / Example spliced isoform

GCAACCAGGGCTTCCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATG
GATATGCGGTCCAATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGCAAGCGTTTTCGTCTTAAAGGGTTGAGACGTCTCTGTTGTAGAGGGAGGGTTAGTCCTGGTAATGGCATTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAG
TGTTCTGTTTAAAAGGGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGGTTGCCAAAGGGGTCTCGACACTGTATGCCGGCGTTAACGGTCAATCTAAAGTAGATTGTATGGTTATTGAATCTGCGTCTATTTCTCTCCAACCTGTTAAAGCGAAGGATTAACCCTATTTATTATCCT
CAGCACGATATTGTAGTTGCATCCACCGTTTGCTCTGTGTATGATTTCAGAGATATGTTTATAAGATGGAATGCTGTCGGTCAAATCCACGCGTTTTACCAAGCAACGATAATTTGTTGTGCCGAGTCGCAGCAACCGTCCTTGGCTCTGCATATTGTTTGTTTATTATTAAGATTAAATTTATAACAGACTCTGCATGT
GAGATCCATACCATCGCCGTGATAAGATGGGTTACCATCCTCCCTCCGATTAGTTATGGTTGTATTTAATAACTAGCAATTGCTCCAAAAGGTGCAATAATATGCGGATGGGTTGTTGTTGTGCCATCTTTAGATGTAATTT

>TRINITY_DN45277_c0_g2_i5 from sample A8 / Example unspliced isoform:

GCAACCAGGGCTTCCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATG
GATATGCGGTCCAATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGCAAGCGTTTTCGTCTTAAAGGGTTGAGACGTCTCTGTTGTAGAGGGAGGGTTAGCCCTGGTAATGGCAGTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAG
TGTTCTGTTTAAAAGGGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGgtaagttacgataccatactaaactcttctgtatatctggatttacatttaacaaccttcttaactcatctcaggtgtgtacttgcagGTTGCCAAAGGGGTCTCGACACTGTATGCCGGCGTTAACGGT
CAATCTAAAGTAGATTGTATGGTTATTGAATCTGCGTCTATTTCTCTCCAACCTGTTAAAGCGAAGGATTAACCCTATTTATTATCCTCAGCACGATATTGTAGTTGCATCCACCGTTTGCTCTGTGTATGATTTCAGAGATATGTTTATAAGATGGAATGCTGTCGGTCAAATCCACGCGTTTTACCAAGCAACGATAA
TTTGTTGTGCCGAGTCGCAGCAACCGTCCTTGGCTCTGCATATTGTTTGTTTATTATTAAGATTAAATTTATAACAGACTCTGCATGTGAGATCCATACCATCGCCGTGATAAGATGGGTTACCATCCTCCCTCCGATTAGTTATGGTTGTATTTAATAACTAGCAATTGCTCCAAAAGGTGCAATAATATGCGGATGGG
TTGTTGTTGTGCCATCTTTAGATGTAATTT

Intron 2 GTATGGATGA ... TCTGCTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	4	3
A2	-1	0	0	0
A3	100	0	0	6
A4	69.23	2	4	5
A5	-1	0	0	0
A6	90.91	1	12	8
A7	65.08	11	9	32
A8	100	0	20	11
A9	100	0	4	18
A10	96	1	12	36

>TRINITY_DN44038_c0_g1_i6 from sample A7 / Example spliced isoform

TATAGGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGGTACTTCTGGCTCACTCCAATGGAACTCGCTGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCC
CAGCAGGAACCCCTGATCCTGATGCAGAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTTCCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTT
TTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCAATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGGTATATATCATACATTGTACATGCC
AAGTTCGCGATTGTCATCGTTTTCTAAGTATTTTAAGTTTCTAGCCAAACTTGTATTTAGTTGATTATCTGGGGTAGAGAAGGATTCCTGTGCCATCGGAAAAGGCGGGAAGTTCTGCAGATGTTAAAAGGCCATGAATAGGCTGTTTTACATTGAATGTTTATTACTGGCGAATGGGGAGGCAATCTATACAAATGTCT
ATATTATATAGATCATTTGCAGATTTCGAACTAGGAAGCGATCTCTGGAATTTAAATCCCTGTTCTGATTTTATTGATTTTCTATTTTGTAAATGAGCATGACGAACTCTGTCGAATGAGTATAAAACTCTCTTTTACTTTGATTGTTTATTTCGGGCGAATGGGAAAGCTATCTTTATAAATGTAATGATTGCTCGCCT
ATTTCGTTTTGGGAGAAAAGGCAACCTGTTAGTAATAGGCGGAAGCCCTGGAACCCACTCATTCTTTTTGCAGCAAGCGTTTTCGTCTTAAAGGGTTGAGACGTCTCTGTTGTAGAGGGAGGGTTAGTCCTGGTAATGGCATTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAGTGTTCTGTTTAAAAG
GGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGGTGTGTACTTGCAGGTTGCCAAAGGGGTCTCGAC

>TRINITY_DN44038_c0_g1_i9 from sample A7 / Example unspliced isoform:

TATAGGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGgtatggatgactgcattagttgataagctgcgtctgcttgtaaaccctagatcctatgagaattcttcttcatcgttatccactatgaactctgcttcagGTACTTCTGGCTCACTCCAATGGAAC
TCGCTGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCCCAGCAGGAACCCCTGATCCTGATGCAGAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTT
CCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCA
ATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGGTATATATCATACATTGTACATGCCAAGTTCGCGATTGTCATCGTTTTCTAAGTATTTTAAGTTTCTAGCCAAACTTGTATTTAGTTGATTATCTGGGGTAGAGAAGGATTCCTGTGCCATCGGA
AAAGGCGGGAAGTTCTGCAGATGTTAAAAGGCCATGAATAGGCTGTTTTACATTGAATGTTTATTACTGGCGAATGGGGAGGCAATCTATACAAATGTCTATATTATATAGATCATTTGCAGATTTCGAACTAGGAAGCGATCTCTGGAATTTAAATCCCTGTTCTGATTTTATTGATTTTCTATTTTGTAAATGAGCAT
GACGAACTCTGTCGAATGAGTATAAAACTCTCTTTTACTTTGATTGTTTATTTCGGGCGAATGGGAAAGCTATCTTTATAAATGTAATGATTGCTCGCCTATTTCGTTTTGGGAGAAAAGGCAACCTGTTAGTAATAGGCGGAAGCCCTGGAACCCACTCATTCTTTTTGCAGCAAGCGTTTTCGTCTTAAAGGGTTGAG
ACGTCTCTGTTGTAGAGGGAGGGTTAGTCCTGGTAATGGCATTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAGTGTTCTGTTTAAAAGGGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGGTGTGTACTTGCAGGTTGCCAAAGGGGTCTCGAC

Intron 3 GTATGATAGA ... GTATGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	2
A2	-1	0	0	0
A3	0	1	0	0
A4	33.33	1	1	0
A5	-1	0	0	0
A6	28.57	5	2	2
A7	25.93	10	6	1
A8	22.22	14	5	3
A9	15.79	8	0	3
A10	26.32	14	6	4

>TRINITY_DN40513_c0_g4_i3 from sample A9 / Example spliced isoform

GGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGGTATGGATGACTGCATTAGTTGATAAGCTGCGTCTGCTTGTAAACCCTAGATCCTATGAGAATTCTTCTTCATCGTTATCCACTATGAACTCTGCTTCAGGTACTTCTGGCTCACTCCAATGGAACTCGC
TGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCCCAGCAGGAACCCCTGATCCTGATGCAGAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTTCCAT
AGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCAATCC
GACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGGTATATATCATACATTGTACATGCCAAGTTCGCGATTGTCATCGTTTTCTAAGTATTTTAAGTTTCTAGCCAAACTTGTATTTAGTTGATTATCTGGGGTAGAGAAGGATTCCTGTGCCATCGGAAAAG
GCGGGAAGTTCTGCAGATGTTAAAAGGCCATGAATAGGCTGTTTTACATTGAATGTTTATTACTGGCGAATGGGGAGGCAATCTATACAAATGTCTATATTATATAGATCATTTGCAGATTTCGAACTAGGAAGCGATCTCTGGAATTTAAATCCCTGTTCTGATTTTATTGATTTTCTATTTTGTAAATGAGCATGACG
AACTCTGTCGAATGAGTATAAAACTCTCTTTTACTTTGATTGTTTATTTCGGGCGAATGGGAAAGCTATCTTTATAAATGTAATGATTGCTCGCCTATTTCGTTTTGGGAGAAAAGGCAACCTGTTAGTAATAGGCGGAAGCCCTGGAACCCAC

>TRINITY_DN40513_c0_g4_i1 from sample A9 / Example unspliced isoform:

GGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGGTATGGATGACTGCATTAGTTGATAAGCTGCGTCTGCTTGTAAACCCTAGATCCTATGAGAATTCTTCTTCATCGTTATCCACTATGAACTCTGCTTCAGGTACTTCTGGCTCACTCCAATGGAACTCGC
TGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCCCAGCAGGAACCCCTGgtatgatagatagtaggaatcgcctttggttttagccatagccctggatatatacctattattgttatgtatgtgcagATCCTGATGCA
GAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTTCCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAA
CGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCAATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGGTATATATCATACATTGTACATGCCAAGTTCGCGATTGTCATCGTTTTCTA
AGTATTTTAAGTTTCTAGCCAAACTTGTATTTAGTTGATTATCTGGGGTAGAGAAGGATTCCTGTGCCATCGGAAAAGGCGGGAAGTTCTGCAGATGTTAAAAGGCCATGAATAGGCTGTTTTACATTGAATGTTTATTACTGGCGAATGGGGAGGCAATCTATACAAATGTCTATATTATATAGATCATTTGCAGATTT
CGAACTAGGAAGCGATCTCTGGAATTTAAATCCCTGTTCTGATTTTATTGATTTTCTATTTTGTAAATGAGCATGACGAACTCTGTCGAATGAGTATAAAACTCTCTTTTACTTTGATTGTTTATTTCGGGCGAATGGGAAAGCTATCTTTATAAATGTAATGATTGCTCGCCTATTTCGTTTTGGGAGAAAAGGCAACC
TGTTAGTAATAGGCGGAAGCCCTGGAACCCAC

Intron 4 GTATATATCA ... CTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	45.45	3	3	2
A2	-1	0	0	0
A3	25	3	2	0
A4	100	0	1	0
A5	50	2	4	0
A6	48.84	11	13	8
A7	55.56	12	21	9
A8	67.44	7	21	8
A9	42.86	4	5	1
A10	63.64	6	11	10

>TRINITY_DN44038_c0_g1_i3 from sample A7 / Example spliced isoform

TATAGGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGGTATGGATGACTGCATTAGTTGATAAGCTGCGTCTGCTTGTAAACCCTAGATCCTATGAGAATTCTTCTTCATCGTTATCCACTATGAACTCTGCTTCAGGTACTTCTGGCTCACTCCAATGGAAC
TCGCTGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCCCAGCAGGAACCCCTGATCCTGATGCAGAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTT
CCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCA
ATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGCAAGCGTTTTCGTCTTAAAGGGTTGAGACGTCTCTGTTGTAGAGGGAGGGTTAGTCCTGGTAATGGCATTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAGTGTTCTGTTTAAA
AGGGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGGTTGCCAAAGGGGTCTCGACACTGTATGCCGGCGTTAACGGTCAATCTAAAGTAGATTGTATGGTTATTGAATCTGCGTCTATTTCTCTCCAACCTGTTAAAGAGAAGGATTAACCCTATTTATTATCCTCAGCACGATATTG
TAGTTGCATCCACCGTTTGCTCTGTGTATGATTTCAGAGATATGTTTATAAGATGGAATGCTGTCGGTCAAATCCACGCGTTTTACCAAGCAACGATAATTTGTTGTGCCGAGTCGCAGCAACCGTCCTTGGCTCTGCATATTGTTTGTTTATTATTAAGATTAAATTTATAACAGACTCTGCATGTGAGATCCATACCA
TCGCCGTGATAAGATGGGTTACCATCCTCCCTCCGATTAGTTATGGTTGTATTTAATAACTAGCAATTGCTCCAAAAGGTGCAATAATATGCGGATGGGTTGTTGTTGTGCCATCTTTAGATGTAATTTGGCATTTGTTAAGAAAACTTGACATGTCATTTTATTATATTAGATAATTT

>TRINITY_DN44038_c0_g1_i9 from sample A7 / Example unspliced isoform:

TATAGGGTTTGCAGGGTTCACTGTACTTCAGTGTATTTGCTGCAATCAGAGTGCTTGACAGAGGTTCCCACGGGGTATGGATGACTGCATTAGTTGATAAGCTGCGTCTGCTTGTAAACCCTAGATCCTATGAGAATTCTTCTTCATCGTTATCCACTATGAACTCTGCTTCAGGTACTTCTGGCTCACTCCAATGGAAC
TCGCTGCACATTCAAGCCGTCCCAGGATCTGAATCTTCCTCGCTTCAAACGTCGTCGCCCTTTCCAGTCTCATCCAACAACAACAAACGCAACCGTCGCCCAGCAGGAACCCCTGATCCTGATGCAGAGGTGGTGGCATTGTCGTCCAAGACGTTAATGGAATCTGATAGATATATCTGCGAGATATGCAACCAGGGCTT
CCATAGGTATCAAAACCTGCAGATGCACAGGCGTCGGCACAAGGTTCCCTGGAAGCTGTTAAAGAAACCCACTCCAGAAGTCCGGAAGCGAGTGTATGTTTTCCCAGAACCAACCTGCCTTCACAACGATCCGTGCCATGCTCTGGGAGAAGCACTTCCGCAGAAAACACAGCATTGAGAAGCAATGGATATGCGGTCCA
ATCCGACTACAAAGCCCATCTCAAGGCCTGCGGAACTAAAGGCCATTCCTGTGACTGTGGTAGAGTCTTCTCCAGgtatatatcatacattgtacatgccaagttcgcgattgtcatcgttttctaagtattttaagtttctagccaaacttgtatttagttgattatctggggtagagaaggattcctgtgccatcgga
aaaggcgggaagttctgcagatgttaaaaggccatgaataggctgttttacattgaatgtttattactggcgaatggggaggcaatctatacaaatgtctatattatatagatcatttgcagatttcgaactaggaagcgatctctggaatttaaatccctgttctgattttattgattttctattttgtaaatgagcat
gacgaactctgtcgaatgagtataaaactctcttttactttgattgtttatttcgggcgaatgggaaagctatctttataaatgtaatgattgctcgcctatttcgttttgggagaaaaggcaacctgttagtaataggcggaagccctggaacccactcattctttttgcagCAAGCGTTTTCGTCTTAAAGGGTTGAG
ACGTCTCTGTTGTAGAGGGAGGGTTAGTCCTGGTAATGGCATTAGATAGTCCACCGGGACTTGAGTTGAGGAGCCAAGCTCAGAGTGTTCTGTTTAAAAGGGTTCGGTGTAACTTCATACAGCTGCACTGTGTTTTCTCCACTTCATAAGCTTTGGTGTGTACTTGCAGGTTGCCAAAGGGGTCTCGAC