NA ----> NA
Intron 1 GTTCGTACAC ... TCCGTTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 100 | 0 | 0 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 28.57 | 5 | 2 | 2 |
| A7 | 60 | 1 | 0 | 3 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | 53.85 | 3 | 3 | 4 |
| A10 | 55.56 | 2 | 2 | 3 |
>TRINITY_DN33947_c0_g1_i2 from sample A9 / Example spliced isoformATTTTAGAATTTCCTAGATCCTCATCTTGATAATCTGGGGTCGAAAATAGAATTCAAAATCACATATTGCCTCTCTCAGAGGGATGTAGGGCTCGTTTTGATGGGGCATCACAAGTGAATGCAAGTCGATGTGGAGTTGGGGCCTTTATTGAGTTGGATAACAAGCATCATATTAACCTCTGGATGAACTGTGATGCAGA
AACAAACAGAAAAAGAGAATTACTCGCACTATGAATGCTTCTTTATTATGCAAGACTTAGAAATTCAGCCCTCCAGCAAATCGCAAGGGATTCTCTCTCTACCATAAATTGGGTTTGTGGTATTGGATCCATTTCTTCGATGATCTTCCTCCCATGGCTGGATCAAGTTTCTCACTTTCTTTGTGAGATTCGTCGGGTTC
AGTTTATTCACATTTTTCAGGAGTTCAACTCTTCTGCAGATGCTTTATCTCGTAAAGGCTCTCTTGATATCTATTTTATATTAGCGGCATGTATTTCATATTCCTTTTTGGCGGCATCTCTGCTTGGGCCCTTTATTTCCTCATGCCTGGGCGTTTTTTTGGGGTGATCTTTGTGCCCTTATTTCCTTCCTGGTTTCGGA
CCTATGGTTTTGGGCTGGTGCCCGTTCGGATCTCTTGTTTTGTTCCTTGGTTGGGCAGTTCTGTGTTGCCTTGCTTATCCTTCTTGGAATCTTGCCGTATTGGGTGATCTTGCCCGGTTTCTTGGCGAGGAATAGTCGTCG
>TRINITY_DN33947_c0_g1_i1 from sample A9 / Example unspliced isoform:ATTTTAGAATTTCCTAGATCCTCATCTTGATAATCTGGGGTCGAAAATAGAATTCAAAATCACATATTGCCTCTCTCAGAGGGATGTAGGGCTCGTTTTGATGGGGCATCACAAGTGAATGCAAGTCGATGTGGAGTTGGGGCCTTTATTGAGTTGGATAACAAGCATCATATTAACCTCTGGATGAACTGTGATGCAGA
AACAAACAGAAAAAGAGAATTACTCGCACTATGAATGCTTCTTTATTATGCAAGACTTAGAAATTCAGCCCTCCAGCAAATCGCAAGGGATTCTCTCTCTACCATAAATTGGGTTTGTGGTATTGGATCCATTTCTTCGATGATCTTCCTCCCATGGCTGGATCAAGTTTCTCACTTTCTTTGTGAGATTCGTCGGGTTC
AGTTTATTCACATTTTTCAGGAGTTCAACTCTTCTGCAGATGCTTTATCTCGTAAAGgttcgtacacaacagaaggtattttttgtttttagatttgggaggatcgatgcatgttatttgacgacactttggagatctatcctccatcatttttgttgcatttcttttccgtttcagGCTCTCTTGATATCTATTTTATA
TTAGCGGCATGTATTTCATATTCCTTTTTGGCGGCATCTCTGCTTGGGCCCTTTATTTCCTCATGCCTGGGCGTTTTTTTGGGGTGATCTTTGTGCCCTTATTTCCTTCCTGGTTTCGGACCTATGGTTTTGGGCTGGTGCCCGTTCGGATCTCTTGTTTTGTTCCTTGGTTGGGCAGTTCTGTGTTGCCTTGCTTATCC
TTCTTGGAATCTTGCCGTATTGGGTGATCTTGCCCGGTTTCTTGGCGAGGAATAGTCGTCG
Intron 2 GTTCGTACAC ... TCCGTTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 100 | 0 | 0 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 28.57 | 5 | 2 | 2 |
| A7 | 60 | 1 | 0 | 3 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 63.64 | 2 | 3 | 4 |
| A10 | 55.56 | 2 | 2 | 3 |
>TRINITY_DN33634_c0_g1_i3 from sample A6 / Example spliced isoformTCGATGATCTTCCTCCCATGGCTGGATCAAGTTTCTCACTTTCTTTGTGAGATTCGTCGGGTTCAGTTTATTCACATTTTTCAGGAGTTCAACTCTTCTGCAGATGCTTTATCTCGTAAAGGCTCTCTTGATATCTATTTTATATTAGCGGCATGTATTTCATATTCCTTTTTGGCGGCATCTCTGCTTGGGCCCTTTAT
TTCCTCATGCCTGGGCGTTTTTCTGGGGTGATCTTTGTGCCCTTATTTCCTTCCTGGTTTCGGACCTATGGTTTTGGGCTGGTGCCCGTTCGGATCTCTTGTTTTGTTCCTTGGTTGGGCAGTTCTGTGTTGCCTTGCTTATCCTTCTTGGAATCTTGCCGTATTGGGTGATCTTGCCCGGTTTCTTGGCG
>TRINITY_DN33634_c0_g1_i1 from sample A6 / Example unspliced isoform:TCGATGATCTTCCTCCCATGGCTGGATCAAGTTTCTCACTTTCTTTGTGAGATTCGTCGGGTTCAGTTTATTCACATTTTTCAGGAGTTCAACTCTTCTGCAGATGCTTTATCTCGTAAAGgttcgtacacaacaaaaggtatttttttttttaaagatttgggaggatcgatgcatgttatttgacgacactttggaga
tctatcctccatcatttttgttgcatttcttttccgtttcagGCTCTCTTGATATCTATTTTATATTAGCGGCATGTATTTCATATTCCTTTTTGGCGGCATCTCTGCTTGGGCCCTTTATTTCCTCATGCCTGGGCGTTTTTCTGGGGTGATCTTTGTGCCCTTATTTCCTTCCTGGTTTCGGACCTATGGTTTTGGGC
TGGTGCCCGTTCGGATCTCTTGTTTTGTTCCTTGGTTGGGCAGTTCTGTGTTGCCTTGCTTATCCTTCTTGGAATCTTGCCGTATTGGGTGATCTTGCCCGGTTTCTTGGCGAGGAATAGTCGTCGTTATCCTTGTAACTAATCTTATATTTTTATAATTGAAAGTATAGTATTTTTCTTGAGTG