sp|O82462|SYEC_ARATH ----> Glutamate--tRNA ligase, cytoplasmic
Intron 1 GTATTCCTTC ... TGTGAGAAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 3 | 4 | 5 |
| A2 | 55.56 | 2 | 4 | 1 |
| A3 | 61.9 | 4 | 7 | 6 |
| A4 | 6.67 | 7 | 1 | 0 |
| A5 | 20 | 4 | 1 | 1 |
| A6 | 100 | 0 | 3 | 2 |
| A7 | 30 | 7 | 3 | 3 |
| A8 | 71.43 | 2 | 6 | 4 |
| A9 | 45.45 | 3 | 3 | 2 |
| A10 | 33.33 | 3 | 2 | 1 |
>TRINITY_DN111732_c0_g1_i8 from sample A3 / Example spliced isoformCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAATTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGCACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTC
ACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATG
>TRINITY_DN111732_c0_g1_i11 from sample A3 / Example unspliced isoform:CTTATTTCAACAATAAATAATTCCATGACTTGTCTTTGGTTGGCCTGCTTTATTTTTCTTCCCAGTGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGgtattccttcatcgtttctttgttgcctatgaattatgaattgctgcata
ttccttatttttctggtctttttattgcaatattgacatcttatttcatttctttaacccttgtgagaaagGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGC
Intron 2 GTATTCCTTC ... ATGCGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 6 | 4 | 2 |
| A2 | 38.46 | 4 | 4 | 1 |
| A3 | 40.74 | 8 | 7 | 4 |
| A4 | 9.09 | 5 | 1 | 0 |
| A5 | 100 | 0 | 1 | 1 |
| A6 | 17.65 | 7 | 3 | 0 |
| A7 | 42.86 | 4 | 3 | 3 |
| A8 | 75 | 1 | 6 | 0 |
| A9 | 9.68 | 14 | 3 | 0 |
| A10 | 8.57 | 16 | 2 | 1 |
>TRINITY_DN111732_c0_g1_i1 from sample A3 / Example spliced isoformCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGC
ATAGAGCATACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTG
TTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGG
TATATCGCTAAAGGCTGAACCCAAGCTTCCTCCAGGGTTGCCG
>TRINITY_DN111732_c0_g1_i11 from sample A3 / Example unspliced isoform:CTTATTTCAACAATAAATAATTCCATGACTTGTCTTTGGTTGGCCTGCTTTATTTTTCTTCCCAGTGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGgtattccttcatcgtttctttgttgcctatgaattatgaattgctgcata
ttccttatttttctggtctttttattgcaatattgacatcttatttcatttctttaacccttgtgagaaaggcaacgagtatgtgacaatgagtgtgatctggatgcgtacagAATGGAAGTGGTTTTGGC
Intron 3 GTATGTATGA ... CAATCCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.57 | 48 | 3 | 6 |
| A2 | 6 | 47 | 4 | 2 |
| A3 | 9.22 | 64 | 9 | 4 |
| A4 | 14.29 | 39 | 6 | 7 |
| A5 | 20.83 | 19 | 6 | 4 |
| A6 | 1.75 | 28 | 1 | 0 |
| A7 | 12.61 | 52 | 3 | 12 |
| A8 | 12.2 | 18 | 1 | 4 |
| A9 | 11.3 | 51 | 7 | 6 |
| A10 | 7.6 | 79 | 3 | 10 |
>TRINITY_DN42449_c2_g2_i13 from sample A9 / Example spliced isoformGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTG
GCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG
>TRINITY_DN42449_c2_g2_i2 from sample A9 / Example unspliced isoform:CGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatgatgcatagagcatacagatacgcagatgcatagagcatacatgtcaacttgcctcacattgtctgtttagtgggatcctcctcctttgtgtgctaccat
tcatcctccatcttccacaatccctagGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG
Intron 4 GTAAGTTTTA ... CTGGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.04 | 98.7 | 23.7 | 36.7 |
| A2 | 20.52 | 81 | 8 | 21 |
| A3 | 24.73 | 127 | 9 | 43 |
| A4 | 30.09 | 66 | 9 | 28 |
| A5 | 28.84 | 54.3 | 1 | 21.7 |
| A6 | 15.28 | 53.7 | 0 | 10.3 |
| A7 | 17.54 | 190.7 | 11.7 | 42.7 |
| A8 | 20.76 | 39.7 | 3 | 11 |
| A9 | 20.79 | 142 | 0.3 | 40 |
| A10 | 16.96 | 211.7 | 4 | 46.7 |
>TRINITY_DN134098_c0_g4_i2 from sample A1 / Example spliced isoformAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC
>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAgtaagttttattttttctctttggattctaatgtgttttttctttcattatttgttttatcatggccatgctcaagtgttcgtgtgtatttcttttaatctttggatttgctgggttcagAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGTGCGTGAGGAGGAGGATGCATTTATTTATTTATTTTCGTTCTTTGTTTATTCTGTTAACAATTATCAAAATTGTTTATCTACCAGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC
Intron 5 GTATGTATGG ... CAATCCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.67 | 46 | 29 | 2 |
| A2 | 38.98 | 36 | 23 | 2 |
| A3 | 44.35 | 64 | 51 | 4 |
| A4 | 32.69 | 35 | 17 | 5 |
| A5 | 56.1 | 18 | 23 | 0 |
| A6 | 38.24 | 21 | 13 | 1 |
| A7 | 51.69 | 57 | 61 | 1 |
| A8 | 41.94 | 18 | 13 | 1 |
| A9 | 48.65 | 57 | 54 | 1 |
| A10 | 38.14 | 73 | 45 | 6 |
>TRINITY_DN111732_c0_g1_i5 from sample A3 / Example spliced isoformCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAACAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTGT
TTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCTTCCT
CCAGGGTTGCCG
>TRINITY_DN111732_c0_g1_i12 from sample A3 / Example unspliced isoform:CTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTAGGGACCCTAGATTATAGGGTTTGCAGGTTTTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAA
GAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatggcacttttcgctcctgggtaatcggacgcagatgcatagagcatacagatacgcagatgcatagagcatacatgtcaacttgcctcacattgtctgtttagtgggatcctcctcctttgtgtgctaccattcatcctccatcttccacaatc
cctagCAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCTTCCTCCAGGGTTGCCG
Intron 6 GTATGTATGG ... TATCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.59 | 108 | 24 | 32 |
| A2 | 11.61 | 99 | 12 | 14 |
| A3 | 15.32 | 152 | 28 | 27 |
| A4 | 18.78 | 80 | 16 | 21 |
| A5 | 20.88 | 72 | 17 | 21 |
| A6 | 6.45 | 58 | 2 | 6 |
| A7 | 4.27 | 202 | 6 | 12 |
| A8 | 6.67 | 42 | 2 | 4 |
| A9 | 1.71 | 172 | 0 | 6 |
| A10 | 0 | 198 | 0 | 0 |
>TRINITY_DN134098_c0_g4_i3 from sample A1 / Example spliced isoformAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTAGGGACCCTAGATTATAGGGTTTGCAGGTTTTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAATTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCA
TACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGAATGGAAGTGGTTTTGGCATAT
>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatggtgcgtgaggaggaggatgcatttatttatttattttcgttctttgtttattctgttaacaattatcaaaattgtttatctaccagTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC
Intron 7 GTCGGGACCT ... TTGTGGAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.39 | 30 | 67 | 69 |
| A2 | 66.88 | 26 | 49 | 56 |
| A3 | 57.2 | 58 | 74 | 81 |
| A4 | 62.82 | 29 | 45 | 53 |
| A5 | 47.2 | 33 | 27 | 32 |
| A6 | 70.91 | 16 | 36 | 42 |
| A7 | 63.64 | 66 | 117 | 114 |
| A8 | 63.64 | 14 | 23 | 26 |
| A9 | 53.02 | 70 | 81 | 77 |
| A10 | 61.1 | 78 | 118 | 127 |
>TRINITY_DN45273_c2_g2_i9 from sample A10 / Example spliced isoformGGGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATTGGGAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAAAATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTGGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGA
ACAACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAACTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGA
GCATACA
>TRINITY_DN45273_c2_g2_i2 from sample A10 / Example unspliced isoform:GGGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATTGGGAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAAAATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTGGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGA
ACAACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGgtcgggaccttagattatagggtttgcaggttgtggaaagGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGG
AAGTGGTTTTGGCATATGCAGAAGATGCCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATC
Intron 8 GCAACGAGTA ... ATGCGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.14 | 22.5 | 16 | 1 |
| A2 | 41.66 | 27 | 18 | 1 |
| A3 | 28.02 | 39 | 15 | 1 |
| A4 | 37.09 | 8.5 | 5 | 0 |
| A5 | 30.68 | 23.5 | 10 | 0 |
| A6 | 40.72 | 9 | 6 | 0 |
| A7 | 41.47 | 52.5 | 35 | 3 |
| A8 | 55.55 | 3.5 | 4 | 0 |
| A9 | 36.31 | 39.5 | 22 | 5 |
| A10 | 39 | 31 | 19 | 10 |
>TRINITY_DN42449_c2_g2_i6 from sample A9 / Example spliced isoformGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGAC
GCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG
>TRINITY_DN42449_c2_g2_i4 from sample A9 / Example unspliced isoform:GGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGAC
GCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAgcaacgagtatgtgacaatgagtgtgatctggatgcgtacagAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG
Intron 9 GTGCGTGAGG ... TATCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.74 | 107 | 24 | 32 |
| A2 | 11.01 | 101 | 11 | 14 |
| A3 | 15.38 | 154 | 29 | 27 |
| A4 | 19.78 | 73 | 15 | 21 |
| A5 | 20.43 | 74 | 17 | 21 |
| A6 | 6.67 | 56 | 2 | 6 |
| A7 | 4.48 | 192 | 6 | 12 |
| A8 | 8.33 | 33 | 2 | 4 |
| A9 | 1.83 | 161 | 0 | 6 |
| A10 | 0 | 185 | 0 | 0 |
>TRINITY_DN134098_c0_g4_i2 from sample A1 / Example spliced isoformAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC
>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGgtgcgtgaggaggaggatgcatttatttatttattttcgttctttgtttattctgttaacaattatcaaaattgtttatctaccagTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC