sp|O82462|SYEC_ARATH ----> Glutamate--tRNA ligase, cytoplasmic


Intron 1 GTATTCCTTC ... TGTGAGAAAG

Found issues: Low number of reads   


SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A160345
A255.56241
A361.9476
A46.67710
A520411
A6100032
A730733
A871.43264
A945.45332
A1033.33321



>TRINITY_DN111732_c0_g1_i8 from sample A3 / Example spliced isoform
CTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAATTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGCACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTC
ACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATG


>TRINITY_DN111732_c0_g1_i11 from sample A3 / Example unspliced isoform:
CTTATTTCAACAATAAATAATTCCATGACTTGTCTTTGGTTGGCCTGCTTTATTTTTCTTCCCAGTGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGgtattccttcatcgtttctttgttgcctatgaattatgaattgctgcata
ttccttatttttctggtctttttattgcaatattgacatcttatttcatttctttaacccttgtgagaaag
GCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGC




Intron 2 GTATTCCTTC ... ATGCGTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A133.33642
A238.46441
A340.74874
A49.09510
A5100011
A617.65730
A742.86433
A875160
A99.681430
A108.571621



>TRINITY_DN111732_c0_g1_i1 from sample A3 / Example spliced isoform
CGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGC
ATAGAGCATACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTG
TTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGG
TATATCGCTAAAGGCTGAACCCAAGCTTCCTCCAGGGTTGCCG


>TRINITY_DN111732_c0_g1_i11 from sample A3 / Example unspliced isoform:
CTTATTTCAACAATAAATAATTCCATGACTTGTCTTTGGTTGGCCTGCTTTATTTTTCTTCCCAGTGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGgtattccttcatcgtttctttgttgcctatgaattatgaattgctgcata
ttccttatttttctggtctttttattgcaatattgacatcttatttcatttctttaacccttgtgagaaaggcaacgagtatgtgacaatgagtgtgatctggatgcgtacag
AATGGAAGTGGTTTTGGC




Intron 3 GTATGTATGA ... CAATCCCTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A18.574836
A264742
A39.226494
A414.293967
A520.831964
A61.752810
A712.6152312
A812.21814
A911.35176
A107.679310



>TRINITY_DN42449_c2_g2_i13 from sample A9 / Example spliced isoform
GGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTG
GCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG


>TRINITY_DN42449_c2_g2_i2 from sample A9 / Example unspliced isoform:
CGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatgatgcatagagcatacagatacgcagatgcatagagcatacatgtcaacttgcctcacattgtctgtttagtgggatcctcctcctttgtgtgctaccat
tcatcctccatcttccacaatccctag
GCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG




Intron 4 GTAAGTTTTA ... CTGGGTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A127.0498.723.736.7
A220.5281821
A324.73127943
A430.0966928
A528.8454.3121.7
A615.2853.7010.3
A717.54190.711.742.7
A820.7639.7311
A920.791420.340
A1016.96211.7446.7



>TRINITY_DN134098_c0_g4_i2 from sample A1 / Example spliced isoform
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC


>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAgtaagttttattttttctctttggattctaatgtgttttttctttcattatttgttttatcatggccatgctcaagtgttcgtgtgtatttcttttaatctttggatttgctgggttcagAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGTGCGTGAGGAGGAGGATGCATTTATTTATTTATTTTCGTTCTTTGTTTATTCTGTTAACAATTATCAAAATTGTTTATCTACCAGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC




Intron 5 GTATGTATGG ... CAATCCCTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A138.6746292
A238.9836232
A344.3564514
A432.6935175
A556.118230
A638.2421131
A751.6957611
A841.9418131
A948.6557541
A1038.1473456



>TRINITY_DN111732_c0_g1_i5 from sample A3 / Example spliced isoform
CTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAACAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTGT
TTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCTTCCT
CCAGGGTTGCCG


>TRINITY_DN111732_c0_g1_i12 from sample A3 / Example unspliced isoform:
CTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAG
CAGATAACAGTCTATAGAATAAGGGGTAGGGACCCTAGATTATAGGGTTTGCAGGTTTTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAA
GAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatggcacttttcgctcctgggtaatcggacgcagatgcatagagcatacagatacgcagatgcatagagcatacatgtcaacttgcctcacattgtctgtttagtgggatcctcctcctttgtgtgctaccattcatcctccatcttccacaatc
cctag
CAGAAGATGCTCCTCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCGCTAAAGGCTGAACCCAAGCTTCCTCCAGGGTTGCCG




Intron 6 GTATGTATGG ... TATCTACCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A120.591082432
A211.61991214
A315.321522827
A418.78801621
A520.88721721
A66.455826
A74.27202612
A86.674224
A91.7117206
A10019800



>TRINITY_DN134098_c0_g4_i3 from sample A1 / Example spliced isoform
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTAGGGACCCTAGATTATAGGGTTTGCAGGTTTTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAATTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCA
TACATGTCAACTTGCCTCACATTGTCTGTTTAGTGGGATCCTCCTCCTTTGTGTGCTACCATTCATCCTCCATCTTCCACAATCCCTAGAATGGAAGTGGTTTTGGCATAT


>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAgtatgtatggtgcgtgaggaggaggatgcatttatttatttattttcgttctttgtttattctgttaacaattatcaaaattgtttatctaccagTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC




Intron 7 GTCGGGACCT ... TTGTGGAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A169.39306769
A266.88264956
A357.2587481
A462.82294553
A547.2332732
A670.91163642
A763.6466117114
A863.64142326
A953.02708177
A1061.178118127



>TRINITY_DN45273_c2_g2_i9 from sample A10 / Example spliced isoform
GGGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATTGGGAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAAAATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTGGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGA
ACAACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAACTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATGCATAGA
GCATACA


>TRINITY_DN45273_c2_g2_i2 from sample A10 / Example unspliced isoform:
GGGGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATTGGGAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAAAATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTGGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGA
ACAACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGgtcgggaccttagattatagggtttgcaggttgtggaaagGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGGCAACGAGTATGTGACAATGAGTGTGATCTGGATGCGTACAGAATGG
AAGTGGTTTTGGCATATGCAGAAGATGCCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATC




Intron 8 GCAACGAGTA ... ATGCGTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A142.1422.5161
A241.6627181
A328.0239151
A437.098.550
A530.6823.5100
A640.72960
A741.4752.5353
A855.553.540
A936.3139.5225
A1039311910



>TRINITY_DN42449_c2_g2_i6 from sample A9 / Example spliced isoform
GGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGAC
GCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG


>TRINITY_DN42449_c2_g2_i4 from sample A9 / Example unspliced isoform:
GGCATAGGAAAGGCAAGGCCAACCTCCAAGAAAGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAAC
AACGAGAGGAGCGTCTGTTCGAGCAGATAACAGTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGAC
GCAGATGCATAGAGCATACAGATACGCAGATGCATAGAGCATACAgcaacgagtatgtgacaatgagtgtgatctggatgcgtacagAATGGAAGTGGTTTTGGCATATGCAGAAGATGCTCCCCCCCTTTCGATTTTTGCGACAGCAGCAGTTGTTGGTATATCG




Intron 9 GTGCGTGAGG ... TATCTACCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A120.741072432
A211.011011114
A315.381542927
A419.78731521
A520.43741721
A66.675626
A74.48192612
A88.333324
A91.8316106
A10018500



>TRINITY_DN134098_c0_g4_i2 from sample A1 / Example spliced isoform
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAAAGGAATGCAGTCCGAAAGAATGGCGCCTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACGCAGATG
CATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC


>TRINITY_DN134098_c0_g4_i4 from sample A1 / Example unspliced isoform:
AGAAACGGAATGGGAAAAATATAAAACATACATTGAAATTCGGAATTGGGAAAATATAAAACACACATTGAAATTCGTGTTACAAAATAAAACATGCATTAGGATCCGTGTTGCATTTGTATTAGCTAAAGGCCATGAAAAGACATTTTGATTCATTTGGAAAAGAACAACGAGAGGAGCGTCTGTTCGAGCAGATAACA
GTCTATAGAATAAGGGGTCGGGACCTTAGATTATAGGGTTTGCAGGTTGTGGAGTAAGTTTTATTTTTTCTCTTTGGATTCTAATGTGTTTTTTCTTTCATTATTTGTTTTATCATGGCCATGCTCAAGTGTTCGTGTGTATTTCTTTTAATCTTTGGATTTGCTGGGTTCAGAAGGAATGCAGTCCGAAAGAATGGCGC
CTCTGTTTGTATGGGAAACGAACGAATGAAGTATGTATGgtgcgtgaggaggaggatgcatttatttatttattttcgttctttgtttattctgttaacaattatcaaaattgtttatctaccagTTACATAGCATATGCCTGTCACTCACTTTTCGCTCCTGGGTAATCGGACGCAGATGCATAGAGCATACAGATACG
CAGATGCATAGAGCATACAGTTAAGCGCTGAAAGTTTTTTTTAATGAAATGCCTTCTCTAATCTTAATACTTATCTTTTCTTTTGATTTTAC