NA ----> NA
Intron 1 GTATGCACAA ... TCATGTGTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.37 | 5 | 6 | 3 |
| A2 | 60 | 4 | 4 | 8 |
| A3 | 55.56 | 2 | 5 | 0 |
| A4 | 100 | 0 | 1 | 1 |
| A5 | 20 | 2 | 0 | 1 |
| A6 | 25 | 3 | 0 | 2 |
| A7 | 51.43 | 3 | 0 | 6 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 33.33 | 2 | 0 | 2 |
| A10 | 36.36 | 7 | 2 | 6 |
>TRINITY_DN112169_c0_g1_i3 from sample A1 / Example spliced isoformGCGGGGGGTTGCGAGCAACGATTACAAAGGTGAAATGAATTGGCTTGTTTTTCATTCAATGTCAGGGATTTGATGGTGGGAACTGGGACATCAGCGCAGAGCAGAAGTGTTGTAGTTGCTAAAGAGCCGAGCCTACAATCCTCTGGTGCAGTCTTGACTATAAAGATTATAGAGGTGGAATGAATTGGGTTGTTTTTTCA
TTCAATGTGAGAGATTTGATGGTGGGAGAGCAGCGCAGAGCAGAGCATAGGTGTTGTAGTTGCTACAAAGCGGAGCCCATAATCCTCTGGTGCAACATAAAGCAAATGAAGTGAAACTCAGCGCCCACCATCAAAGCGTTGTCTATATACTGCCAATGTTAGTGGCGTCCACGGCTGGTTATAGGCAGGGCATGAACGGC
TGGCTAGTAAAGGTTCGAGGCCACCCTATGCCGAGGTTGGTTGTGATTTCTGGAACATGTCAAGTCCCTGCTGGAGAGGGTTACCAGGAAATGGATTTTGGAGAAGATGAAAGGCTTTTCCTCACTGTTTTTTTTTTAAATTATCCTCTTCCTCTTCCTATCCCTCCTGCGCGCTGAATAGAGTGAAGATTAAATGATGG
TTGGTGGCTTCGATAAACCCATGAATATCCTCTCATGGGTGGAAACTAAGAGGCAATAGAGGAGAAATCTGTAGAGACAAAGAAGAATAAAGACAGAGATCCTGTAGAGGCAAAGGAGGCTATATAGAAAATTCTAATTATATAGCAAAGGAAGTGAAATTCTGTGCCCGCCAGCAAAGCCTTGTCTATATGCTGCCATC
GTTAGTGGCGTCCACGGCTGGTTATGGGCAGGGCATGGCCGGCTGGCTAGTAAAGGTCCAAGGTCACCTGTTCATCTTCAAAGTTATTTTGGCATTAGCTGTGAAGCTCGTGGTGGAATGAGAAAGTCTTGCTGGAATTAGAAATTTAAAGTTATTTTGGCACCAATTGTGAAGCTCCTGTTGGAATTAGAAAGTCTTAT
ATAATGAATGCACTTGGTAAACCCTACGCTGATGGAGGTTCTGATTTCTGAAACTTGTTCAGTCCCGACTCCCTGTTGTCGAGGGTGATTTTGGAGATGAAGAAAGGCCTTTTCCTGAAAGGTATCTTTTAAATTACACTCTCCCTCCCGCGCGCTGAATAGGTATATCTTTTGGCTACCTCTTTTCATGAACACAATTT
TCGTTATTTTATTCTGTTATTCTGTAGGCCACTGATTTCTTCTGCATTGAAACTGAGCAGAGAAAACTACTGAGCAGAGAAAACTACTGCTGCAGAGCAGAGCTGAGAGGCTGATGGGA
>TRINITY_DN112169_c0_g1_i5 from sample A1 / Example unspliced isoform:GCGGGGGGTTGCGAGCAACGATTACAAAGGTGAAATGAATTGGCTTGTTTTTCATTCAATGTCAGGGATTTGATGGTGGGAACTGGGACATCAGCGCAGAGCAGAAGTGTTGTAGTTGCTAAAGAGCCGAGCCTACAATCCTCTGGTGCAGTCTTGACTATAAAGATTATAGAGGTGGAATGAATTGGGTTGTTTTTTCA
TTCAATGTGAGAGATTTGATGGTGGGAGAGCAGCGCAGAGCAGAGCATAGGTGTTGTAGTTGCTACAAAGCGGAGCCCATAATCCTCTGGTGCAACATAAAGCAAATGAAGTGAAACTCAGCGCCCACCATCAAAGCGTTGTCTATATACTGCCAATGTTAGTGGCGTCCACGGCTGGTTATAGGCAGGGCATGAACGGC
TGGCTAGTAAAGGTTCGAGGCCACCCTATGCCGAGGTTGGTTGTGATTTCTGGAACATGTCAAGTCCCTGCTGGAGAGGGTTACCAGGAAATGGATTTTGGAGAAGATGAAAGGCTTTTCCTCACTGTTTTTTTTTTAAATTATCCTCTTCCTCTTCCTATCCCTCCTGCGCGCTGAATAGAGTGAAGATTAAATGATGG
TTGGTGGCTTCGATAAACCCATGAATATCCTCTCATGGGTGGAAACTAAGAGGCAATAGAGGAGgtatgcacaacttctttctggtgtatttttgttgtgtttcatatgtgtatgtttttactgattcaagggttttaatatatctagattcatgtgtagAAATCTGTAGAGACAAAGAAGAATAAAGACAGAGATCCTG
TAGAGGCAAAGGAGGCTATATAGAAAATTCTAATTATATAGCAAAGGAAGTGAAATTCTGTGCCCGCCAGCAAAGCCTTGTCTATATGCTGCCATCGTTAGTGGCGTCCACGGCTGGTTATGGGCAGGGCATGGCCGGCTGGCTAGTAAAGGTCCAAGGTCACCTGTTCATCTTCAAAGTTATTTTGGCATTAGCTGTGA
AGCTCGTGGTGGAATGAGAAAGTCTTGCTGGAATTAGAAATTTAAATCCCGACTCCCTGTTGTCGAGGGTGATTTTGGAGATGAAGAAAGGCCTTTTCCTGAAAGGTATCTTTTAAATTACACTCTCCCTCCCGCGCGCTGAATAGGTATATCTTTTGGCTACCTCTTTTCATGAACACAATTTTCGTTATTTTATTCTG
TTATTCTGTAGGCCACTGATTTCTTCTGCATTGAAACTGAGCAGAGAAAACTACTGAGCAGAGAAAACTACTGCTGCAGAGCAGAGCTGAGAGGCTGATGGGA
Intron 2 GTTATTTTGG ... ACTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 3 | 6 | 5 |
| A2 | 67.57 | 6 | 12 | 13 |
| A3 | 52 | 6 | 7 | 6 |
| A4 | 56.52 | 5 | 8 | 5 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 55.56 | 4 | 6 | 4 |
| A7 | 100 | 0 | 9 | 5 |
| A8 | 100 | 0 | 8 | 1 |
| A9 | 100 | 0 | 7 | 6 |
| A10 | 100 | 0 | 5 | 4 |
>TRINITY_DN112169_c0_g1_i5 from sample A1 / Example spliced isoformGCGGGGGGTTGCGAGCAACGATTACAAAGGTGAAATGAATTGGCTTGTTTTTCATTCAATGTCAGGGATTTGATGGTGGGAACTGGGACATCAGCGCAGAGCAGAAGTGTTGTAGTTGCTAAAGAGCCGAGCCTACAATCCTCTGGTGCAGTCTTGACTATAAAGATTATAGAGGTGGAATGAATTGGGTTGTTTTTTCA
TTCAATGTGAGAGATTTGATGGTGGGAGAGCAGCGCAGAGCAGAGCATAGGTGTTGTAGTTGCTACAAAGCGGAGCCCATAATCCTCTGGTGCAACATAAAGCAAATGAAGTGAAACTCAGCGCCCACCATCAAAGCGTTGTCTATATACTGCCAATGTTAGTGGCGTCCACGGCTGGTTATAGGCAGGGCATGAACGGC
TGGCTAGTAAAGGTTCGAGGCCACCCTATGCCGAGGTTGGTTGTGATTTCTGGAACATGTCAAGTCCCTGCTGGAGAGGGTTACCAGGAAATGGATTTTGGAGAAGATGAAAGGCTTTTCCTCACTGTTTTTTTTTTAAATTATCCTCTTCCTCTTCCTATCCCTCCTGCGCGCTGAATAGAGTGAAGATTAAATGATGG
TTGGTGGCTTCGATAAACCCATGAATATCCTCTCATGGGTGGAAACTAAGAGGCAATAGAGGAGGTATGCACAACTTCTTTCTGGTGTATTTTTGTTGTGTTTCATATGTGTATGTTTTTACTGATTCAAGGGTTTTAATATATCTAGATTCATGTGTAGAAATCTGTAGAGACAAAGAAGAATAAAGACAGAGATCCTG
TAGAGGCAAAGGAGGCTATATAGAAAATTCTAATTATATAGCAAAGGAAGTGAAATTCTGTGCCCGCCAGCAAAGCCTTGTCTATATGCTGCCATCGTTAGTGGCGTCCACGGCTGGTTATGGGCAGGGCATGGCCGGCTGGCTAGTAAAGGTCCAAGGTCACCTGTTCATCTTCAAAGTTATTTTGGCATTAGCTGTGA
AGCTCGTGGTGGAATGAGAAAGTCTTGCTGGAATTAGAAATTTAAATCCCGACTCCCTGTTGTCGAGGGTGATTTTGGAGATGAAGAAAGGCCTTTTCCTGAAAGGTATCTTTTAAATTACACTCTCCCTCCCGCGCGCTGAATAGGTATATCTTTTGGCTACCTCTTTTCATGAACACAATTTTCGTTATTTTATTCTG
TTATTCTGTAGGCCACTGATTTCTTCTGCATTGAAACTGAGCAGAGAAAACTACTGAGCAGAGAAAACTACTGCTGCAGAGCAGAGCTGAGAGGCTGATGGGA
>TRINITY_DN112169_c0_g1_i3 from sample A1 / Example unspliced isoform:GCGGGGGGTTGCGAGCAACGATTACAAAGGTGAAATGAATTGGCTTGTTTTTCATTCAATGTCAGGGATTTGATGGTGGGAACTGGGACATCAGCGCAGAGCAGAAGTGTTGTAGTTGCTAAAGAGCCGAGCCTACAATCCTCTGGTGCAGTCTTGACTATAAAGATTATAGAGGTGGAATGAATTGGGTTGTTTTTTCA
TTCAATGTGAGAGATTTGATGGTGGGAGAGCAGCGCAGAGCAGAGCATAGGTGTTGTAGTTGCTACAAAGCGGAGCCCATAATCCTCTGGTGCAACATAAAGCAAATGAAGTGAAACTCAGCGCCCACCATCAAAGCGTTGTCTATATACTGCCAATGTTAGTGGCGTCCACGGCTGGTTATAGGCAGGGCATGAACGGC
TGGCTAGTAAAGGTTCGAGGCCACCCTATGCCGAGGTTGGTTGTGATTTCTGGAACATGTCAAGTCCCTGCTGGAGAGGGTTACCAGGAAATGGATTTTGGAGAAGATGAAAGGCTTTTCCTCACTGTTTTTTTTTTAAATTATCCTCTTCCTCTTCCTATCCCTCCTGCGCGCTGAATAGAGTGAAGATTAAATGATGG
TTGGTGGCTTCGATAAACCCATGAATATCCTCTCATGGGTGGAAACTAAGAGGCAATAGAGGAGAAATCTGTAGAGACAAAGAAGAATAAAGACAGAGATCCTGTAGAGGCAAAGGAGGCTATATAGAAAATTCTAATTATATAGCAAAGGAAGTGAAATTCTGTGCCCGCCAGCAAAGCCTTGTCTATATGCTGCCATC
GTTAGTGGCGTCCACGGCTGGTTATGGGCAGGGCATGGCCGGCTGGCTAGTAAAGGTCCAAGGTCACCTGTTCATCTTCAAAGTTATTTTGGCATTAGCTGTGAAGCTCGTGGTGGAATGAGAAAGTCTTGCTGGAATTAGAAATTTAAAgttattttggcaccaattgtgaagctcctgttggaattagaaagtcttat
ataatgaatgcacttggtaaaccctacgctgatggaggttctgatttctgaaacttgttcagTCCCGACTCCCTGTTGTCGAGGGTGATTTTGGAGATGAAGAAAGGCCTTTTCCTGAAAGGTATCTTTTAAATTACACTCTCCCTCCCGCGCGCTGAATAGGTATATCTTTTGGCTACCTCTTTTCATGAACACAATTT
TCGTTATTTTATTCTGTTATTCTGTAGGCCACTGATTTCTTCTGCATTGAAACTGAGCAGAGAAAACTACTGAGCAGAGAAAACTACTGCTGCAGAGCAGAGCTGAGAGGCTGATGGGA