sp|Q9XJ35|CLPR1_ARATH ----> ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic


Intron 1 GTTAGTGATT ... AATGCTCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A123.36246756
A224.59184601
A323.34220673
A422.98181546
A53169311
A621.215091370
A723.479032770
A820.348542182
A923.9310683360
A1023.528262540



>TRINITY_DN105189_c0_g1_i2 from sample A3 / Example spliced isoform
CCCCCGGATTATTAATAATTAATTCTTACTTTCTCGAATGACGCTCGAGAAACAATATCTGTAGTAGAAATAGGCATCCACTGAAAAATAAGCGAAAGGCAGGTGTTCACAGCCATGGCTTCCCTTGGAGTTTCAGGAGGATTTACATGTGAGAACTTAGTCACCAGAAAATCTCATCTATCATCATCATTATCATCCTG
CGGAAGTCAATGGACAGGTGGGTCTGTTCAGGTTTTTGGAAGGGGATTCTCCTCAAAATTCTGCAACAAGAAGAAACGCGGGAAGGTTACTGGAGCCAAGGCCAGCTATGATCACATTCCGAAGCAGTTCAGACAGGAGAGTCTCAAAGAAGGGTTGATGGAGAATTTCCAAAATATACCTGAATCTCTTTATGGTCTCA
ATCCTTCACAAATGGATATGTTTCTCACAGAAGACAGCCCAATTAAGCGCCAAGCTGAGCGAGTTACTGAGGAATCAATATCATCTGCAAAACACTATAGGGAGGGTACTGGTATGTGGAGTCTGACAGGCTTGAAGAATGGTCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGCGGGAGGGGGAGGACAT
GGAAGGCTAAGGTCTGCTCCACCGGATTTACCTTCTCTGCTATTGGATGCTCGAATATTGTACCTAGGCATGCCTATTGTGCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCGAAGCCAATTTATTTTTATATAAACTCACCAGGAACACAGAATGAAAAGCGTGAGGCCAT
CGCATTTGAGACTGAGGCATACGCTATTGCAGATATGATAGCGTATATTAAGCCCAAGGTTTACACACTGAACTGTGGAATGGCCTTTGGCCAGGCAGCAATGCTTCTGTCACTTGGAGCCAAGGGACATCGTGCTCTTATGCCTAGCTCAACAACAAAACTGCACCTGCCAGTAGTGAATAAATCCAGTGGTTCTTCCA
TTGATATGTGGATCAAGGCAAAAGAGTTGGAAGCAAATACACAGTATTACATTGAATTACTGGCAAAAGGAATTGGCAAAACACAAGAAGAGATTGCAAAGGATATCCAAAGATCAAGATACTTTTTCCCACAGGAAGCAATTGATTATGGTATTGCTGATAAGATCCTCCCAAAACAGGGTTTGGTCATGGAGAAAAGG
AACTATGATGATATGCTTGCTCAATCAAAAGCTGCACGGATGAAATCTGGCAGGGCTGGTCCACTGGCTGCTCCAGCAGGCAGGCCCTAGGTATAGATCATTGATGAGTTACCTTTTCCAGTTAACATGAGTTGTTCAGAGATTGCTACAGCTATCATGGTTGTTAGAATTTGTATAACCTGAAAGATGTATCTTATATG
ACCCTTATCAATCTTTGTTATTTTCTAGCATGCATATAGTGCTTTGTATATTGTCAAAATTGCAATGAGCTTCTGGACATGTTGTAAACAAACATTCAAGGCAATATGATTAAATACCTAATGAAAGCAAGCACTCCAGAAAATGTAAAAA


>TRINITY_DN105189_c0_g1_i1 from sample A3 / Example unspliced isoform:
CCCCCGGATTATTAATAATTAATTCTTACTTTCTCGAATGACGCTCGAGAAACAATATCTGTAGTAGAAATAGGCATCCACTGAAAAATAAGCGAAAGGCAGGTGTTCACAGCCATGGCTTCCCTTGGAGTTTCAGGAGGATTTACATGTGAGAACTTAGTCACCAGAAAATCTCATCTATCATCATCATTATCATCCTG
CGGAAGTCAATGGACAGGTGGGTCTGTTCAGGTTTTTGGAAGGGGATTCTCCTCAAAATTCTGCAACAAGAAGAAACGCGGGAAGGTTACTGGAGCCAAGGCCAGCTATGATCACATTCCGAAGCAGTTCAGACAGGAGAGTCTCAAAGAAGGGTTGATGGAGAATTTCCAAAATATACCTGAATCTCTTTATGGTCTCA
ATCCTTCACAAATGGATATGTTTCTCACAGAAGACAGCCCAATTAAGCGCCAAGCTGAGCGAGTTACTGAGGAATCAATATCATCTGCAAAACACTATAGGGAGGGTACTGGTATGTGGAGTCTGACAGGCTTGAAGAATGGTCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGCGGGAGGGGGAGGACAT
GGAAGGCTAAGGTCTGCTCCACCGGATTTACCTTCTCTGCTATTGGATGCTCGAATATTGTACCTAGGCATGCCTATTGTGCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCGAAGCCAATTTATTTTTATATAAACTCACCAGGAACACAGgttagtgattggttggtgta
ttaacaatttaacactaaatggattccttgcattacaccggattgccgcttttcagctttacactagagctgtttttaacagaaattgtattttccatcccatttgacatctccttgcaatcaatgctccagAATGAAAAGCGTGAGGCCATCGCATTTGAGACTGAGGCATACGCTATTGCAGATATGATAGCGGTAAG
TAACAAACTAAGTAAATTAAGGGAATTAGATTTGTAAATGAAAATGTTATCAAAGATTCAGAACAGTTGATTGGAATACAC



Intron 2 GTAATATTTT ... TCTTCTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A114.19266144
A213.73201032
A319.75195148
A411.79172023
A512.9967110
A621.765860163
A722.759681285
A821.1511152299
A919.8810402258
A1021.166781182



>TRINITY_DN36315_c0_g1_i2 from sample A9 / Example spliced isoform
CGGGGGGACGCTCGAGAAACAATATCTGTAGTAGAAATAGGCATCCACTGAAAAATAAGCGAAAGGCAGGTGTTCACAGCCATGGCTTCCCTTGGAGTTTCAGGAGGATTTACATGTGAGAACTTAGTCACCAGAAAATCTCATCTATCATCATCATTATCATCCTGCGGAAGTCAATGGACAGGTGGGTCTGTTCAGGT
TTTTGGAAGGGGATTCTCCTCAAAATTCTGCAACAAGAAGAAACGCGGGAAGGTTACTGGAGCCAAGGCCAGCTATGATCACATTCCGAAGCAGTTCAGACAGGAGAGTCTCAAAGAAGGGTTGATGGAGAATTTCCAAAATATTCCTGAATCTCTTTATGGTCTCAATCCTTCACAAATGGATATGTTTCTCACAGAAG
ACAGCCCAATTAAGCGCCAAGCTGAGCGAGTTACTGAGGAATCAATATCATCTGCAAAACACTATAGGGAGGGTACTGGTATGTGGAGTTTGACAGGCTTGAAGAATGGTCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGCGGGAGGGGGAGGACATGGAAGGCTAAGGTCTGCTCCACCGGATTTACCT
TCTCTGCTATTGGATGCTCGAATATTGTACCTAGGCATGCCTATTGTGCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCGAAGCCAATTTATTTTTATATAAACTCACCAGGAACACAGAATGAAAAGCGTGAGGCCATCGCATTTGAGACTGAGGCATACGCTATTGCAGA
TATGATAGCGTATATTAAGCCCAAGGTTTACACACTGAACTGTGGAATGGCCTTTGGCCAGGCAGCAATGCTTCTGTCACTTGGAGCCAAGGGACATCGTGCTCTTATGCCTAGCTCAACAACAAAACTGCACCTGCCAGTAGTGAATAAATCCAGTGGTTCTTCCATTGATATGTGGATCAAGGCAAAAGAGTTGGAAG
CAAATACACAGTATTACATTGAATTACTGGCAAAAGGAATTGGCAAAACACAAGAAGAGATTGCAAAGGATATCCAAAGATCAAGATACTTTTTCCCACAGGAAGCAATTGATTATGGTATTGCTGATAAGATCCTCCCAAAACAGGGTTTGGTCATGGAGAAAAGGAACTATGATGATATGCTTGCTCAATCAAAAGCT
GCACGGATGAAATCTGGCAGGGCTGGTCCACTGGCTGCTCCAGCAGGCAGGCCCTAGGTATAGATCATTGATGAGTTACCTTTTCCAGTTAACATGAGTTGTTCAGAGATTGCTACAGCTATCATGGTTGTTAGAATTTGTATAACCTGAAAGATGTATCTTATATGACCCTTATCAATCTATGTTATTTTCAAGCATGC
ATACAGTGCTTTGTATATTGTCAAAATTGCAATGAGCTTCTGGACATGTTGTAAACAAACATTCAAGGCAATATGATTAAATACCTAATGAAAGCAAGCACTCCAGAAAATGTAAATCATGT


>TRINITY_DN36315_c0_g1_i1 from sample A9 / Example unspliced isoform:
TATGTGAGTCTACTTCATTCAGGCTTATGCAGTTTCTCAATAAGTTCAAGGGCACACTCATAGCTTGTTGCAATATGGTCTACTGGAACTTGAAAATAAGATATCATATCAAGAATCCAAGGGTCACTCATACGCAAGTGTCAGAAGCACAGTTGAAAGTGTTTATAAGATTCGTGTTTTTTTATGCATGTTCTGGTAAT
TTATGCTATCTTAGTAGGTTCAGATATCTAGTCATTCGTTGTTAAGAAATATGCTGATGAACTGCCTTTTTTTCTATCATAGCAAAACTGCACCTGCCAGTAGTGAATAAATCCAGTGGTTCTTCCATTGATATGTGGATCAAGgtaatatttttccctttttttaagatgttacttaagaaatctagaaagttgttctt
aactaacagggaaatgcttacttagctccttttaaaggagtgcttaatacttattataggccagctgatgaaattatgtcttcttcagGCAAAAGAGTTGGAAGCAAATACACAGTATTACATTGAATTACTGGCAAAAGGAATTGGCAAAACACAAGAAGAGATTGCAAAGGATATCCAAAGATCAAGATACTTTTTCC
CACAGGAAGCAATTGATTATGGTATTGCTGATAAGATCCTCCCAAAACAGGGTTTGGTCATGGAGAAAAGGAACTATGATGATATGCTTGCTCAATCAAAAGCTGCACGGATGAAATCTGGCAGGGCTGGTCCACTGGCTGCTCCAGCAGGCAGGCCCTAGGTATAGATCATTGATGAGTTACCTTTTCCAGTTAACATG
AGTTGTTCAGAGATTGCTACAGCTATCATGGTTGTTAGAATTTGTATAACCTGAAAGATGTATCTTATATGACCCTTATCAATCTATGTTATTTTCAAGCATGCATACAGTGCTTTGTATATTGTCAAAATTGCAATGAGCTTCTGGACATGTTGTAAACAAACATTCAAGGCAATATGATTAAATACCTAATGAAAGCA
AGCACTCCAGAAAATGTAAATCATGT