sp|Q9LKI5|XPF_ARATH ----> DNA repair endonuclease UVH1
Intron 1 GTAAGAATGA ... TGTCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 12 | 8 | 12 |
| A2 | 100 | 0 | 6 | 3 |
| A3 | 58.97 | 8 | 14 | 9 |
| A4 | 77.78 | 1 | 3 | 4 |
| A5 | 38.46 | 4 | 5 | 0 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 26.67 | 11 | 5 | 3 |
| A8 | 22.22 | 7 | 2 | 2 |
| A9 | 37.5 | 5 | 6 | 0 |
| A10 | 33.33 | 18 | 8 | 10 |
>TRINITY_DN123552_c7_g1_i2 from sample A1 / Example spliced isoformCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTCTGCGAA
CGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTTTTATAG
TTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAGGTTTTG
GTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGATTGTGAG
GCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGGTTTTTG
ATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGTTGGATTCTATTTATTTTTATGTTTCTAGCAAGCGAGCCATCAGATTCAGACAGGACACGAG
AAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGTGAGAAGTTTTAGAGGAGATAGAAGAAGAAAGACAGAAACGAACAGCATCAGAAGTAGATCCACAAACTTCTCAAGATGCATGGGATGATGGCGGTGGTGCAGTTCTAGTAGC
ATGCAAAGATGAGCGTTCATGCATTCAGCTTCAAGATTGCATTACTAAGGGGACGCAGAAGCTGATGCGAGAAGAGTGGGAAAAATATTTGTTGGGCAAGTCAGAGTTGCATGGTTTACGGACACACACCAAGAAGAAAAATCAAGTCCCCAAAGGATTTGGCATCTTAAATGGAAGAATTCGAACTGGACCTGAAAATA
ATATGGAATCTAACACTATATTTAGGCAAGAACAGGATGCTTTACTAGCTGCAGCAGCTGTTGTTGCAGCTCGAGACAAGGAGGTGATCCCTGTTGGAGATGAGCTTGCATCAGATAAGAGAGTGAAGGGACGAGGGAGAG
>TRINITY_DN123552_c7_g1_i10 from sample A1 / Example unspliced isoform:CGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTCTGCGAA
CGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTTTTATAG
TTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAGGTTTTG
GTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGATTGTGAG
GCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGGTTTTTG
ATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGgtaagaatgacatctgttaccactatcgctgattagttggtgattggaattttttttattgt
tcagcatttttagcctgtttttttaattgtttggcaagtttttgccatttttttcctgattcttattctctggaccttttcccagttattgccgcacacgattttaattttgagcttgaacttcacaaggtgctttttctgttgtcgtcaatgtctactttattaaggtttgtgttgttggctgcctgcaaagtgaaatg
tttttaggcatataactgctgtcttcattgaaatgtcctgaatgcatctgcctctggagtcagggcatgcctcgttttgtattaagatctcgccttatattgtttggtgtggaattcttatctttgacaacgttatggtcttccgtattagggatttgtttcgtcagctgactgcgaaattattttttttagtcatatag
ttgctgtgtatctttatcgaaatgttgtggatgcatcttccacttgtcttaaataatctcctttgattgttattgtggattttaactttgacaaggttatgttgttgtatgaaagggaaacaattccatgaaattttaaatttgagaatgggttgtctattaaccaggagactaaacctactctgtctgacagTTGGATT
CTATTTATTTTTATGTTTCTAGCAAGCGAGCCATCAGATTCAGACAGGACACGAGAAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGTGAGTGAGTGAATCCTTCCTCTGCATTAAAATTATGTCGAACTAATGGATTTTGACTG
ATTTCTCTTATTGCTTGAACCAAAGATCTATATTTTTAAAGTAACCACTCTTAATCCATTTCTGTCATGGTTTGAACCTAAGTCCTATATTTTAAAGTCGACATCTATGTGATATTCTGTTGAGAATTGTTAGCTTTACTTTTCATTTTCAGTTCGCTTTTGAGCTCTCATTATTTGATATGCATAGTTACAAGACATTC
TCTTGATACCGGGACAATAAATGCATAGGCATGATTCAAATTTATGATGTTTATGATTCAAATTTACTGATGATGTTTATTCAAATTTTCTTATTGTGCATCTGAAACTTTTCCCATGTGTTGGCTGATACACTTTGTAGAAAGTTGTAGCTTGCATAAAAGGGATATGCCCAACACAGAAGAATATAGCCTGAAAAATA
AATTTTAGAAACTTCATTGGAGGCCTTTGTACTATTATTGCAATGGACAAAAAGCATATTTAAAACTCAGGTTTCCAAAATTTTCTTGAAAAAAGTACATGTCAACCTTTGCCACTTAGGATGGATGCATTGGTACATCTTTAAACTGAAGTTCGATGGCAAACTTCGAAAATCATGCCCTTGACATGGACTGCTTCAAT
TGCAGTAAGAATGCAATATTTCTCA
Intron 2 GTAAGAATGA ... CTTTATTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.69 | 43 | 8 | 8 |
| A2 | 14.02 | 46 | 6 | 9 |
| A3 | 19.08 | 53 | 14 | 11 |
| A4 | 7.71 | 18 | 3 | 0 |
| A5 | 14.67 | 32 | 5 | 6 |
| A6 | 0 | 11 | 0 | 0 |
| A7 | 7.59 | 67 | 5 | 6 |
| A8 | 5.66 | 25 | 2 | 1 |
| A9 | 8.53 | 59 | 6 | 5 |
| A10 | 12 | 77 | 8 | 13 |
>TRINITY_DN107449_c0_g3_i4 from sample A3 / Example spliced isoformTGATCGCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTC
TGCGAACGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTT
TTATAGTTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAG
GTTTTGGTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGAT
TGTGAGGCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGG
TTTTTGATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGCAAGCGAGCCATCAGATTCAGACAGGACACGAGAAACTGAAAATAGTTCATCCAAA
GACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGTGAGAAGTTTTAGAGGAGATAGAAGAAGAAAGACAGAAACGAACAGCATCAGAAGTAGATCCACAAACTTCTCAAGATGCATGGGATGATGGCGGTGGTGCAGTTCTAGTAGCATGCAAAGATGAGCGTTCATGCA
TTCAGCTTCAAGATTGCATTACTAAGGGGACGCAGAAGGTACTTGCCACTTATTCTTCTGATTTCAGTTCTCGTGCAGTGGGACAAATAGTGAATTAATTCAGTGATGAAAGGAATTTTGTGCAATGATTTGGTAACAAGGTTGTTACAGAGTAGGTTCATCTTTGTGCATGTATACTTGGGGCTACAACCTGGGGTGGT
TTTGGCATGGGAAAGTTTGGTATCAAGTCATTTGTTTGACGAAGCACTGAATGCTTTTTATTAGAGTAGGTTTTTGTGAGGATGTTTTCTTGTTGACTTGAACAGGTATTTAAGCTACTTAGAGTCAGTTTATGGTAATCTTTAGCATAAGTTTGTTCGTTTTATTATTTTCACCTCTTGGGATGGAGTTGGACGGCATG
TTCCACATAGATTCAGAGATAAGGCAGTCAAGGGAAATTTTCCCTGGTAGTGCACTTTCTACATGTTTTATTCTGCAGACAAGAATTTTCTGTTGCAACTTGTACACATTTAATTTGAGGGTTTTTTAATGGTTAAGTAGTAGTGTTTGTTGCTGGAAACTCTTATCCTGGGATAGAATCACAATTTACACTATTGATTT
TTTGTAGTTATTGTTAACCCTAGATTTGGTCCAAGCAAAATTGGGGTTATTCCAAGCAGGTTATGATTCCACATTGGGGATCCGAATATGGTCATCACGTGTCCCTTTTAGAAGGGTTATTATCCATTTGGTTGATTTCTTCAGGACACACCCTACTTTATGAGGTGTTCACATGGCATGGGGTCTTGGTTATGCCATTA
TGGCTGTTTACCCTCTTTGGAGGAGAGCGCT
>TRINITY_DN107449_c0_g3_i1 from sample A3 / Example unspliced isoform:TGATCGCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTC
TGCGAACGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTT
TTATAGTTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAG
GTTTTGGTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGAT
TGTGAGGCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGG
TTTTTGATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGgtaagaatgacatctgttaccactatcgctgattagttggtgattggaattttttt
tattgttcagcatttttagcctgtttttttaattgtttggcaagtttttgccatttttttcctgattcttattctctggaccttttcccagttattgccgcacacgattttaattttgagcttgaacttcacaaggtgctttttctgttgtcgtcaatgtctactttattaagCAAGCGAGCCATCAGATTCAGACAGGA
CACGAGAAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAG
Intron 3 GTAAGAATGA ... ATGTTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.57 | 43 | 8 | 27 |
| A2 | 28.13 | 46 | 6 | 18 |
| A3 | 29.33 | 53 | 14 | 22 |
| A4 | 36.19 | 17.7 | 3 | 10 |
| A5 | 28.89 | 32 | 5 | 13 |
| A6 | 8.33 | 11 | 0 | 1 |
| A7 | 26.37 | 67 | 5 | 24 |
| A8 | 35.9 | 25 | 2 | 14 |
| A9 | 25.32 | 59 | 6 | 20 |
| A10 | 30.63 | 77 | 8 | 34 |
>TRINITY_DN123552_c7_g1_i7 from sample A1 / Example spliced isoformCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGTGGACTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTCTGCGAA
CGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTTTTATAG
TTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAGGTTTTG
GTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGATTGTGAG
GCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGGTTTTTG
ATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGCAAGCGAGCCATCAGATTCAGACAGGACACGAGAAACTGAAAATAGTTCATCCAAAGACAAT
GGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGAAGTTTTAGAGGAGATAGAAGAAGAAAGACAGAAACGAACAGCATCAGAAGTAGATCCACAAACTTCTCAAGATGCATGGGATGATGGCGGTGGTGCAGTTCTAGTAGCATGCAAAGATGAGCGTTCATGCATTCAGCTTCA
AGATTGCATTACTAAGGGGACGCAGAAGCTGATGCGAGAAGAGTGGGAAAAATATTTGTTGGGCAAGTCAGAGTTGCATGGTTTACGGACACACACCAAGAAGAAAAATCAAGTCCCCAAAGGATTTGGCATCTTAAATGGAAGAATTCGAACTGGACCTGAAAATAATATGGAATCTAACACTATATTTAGGCAAGAAC
AGGATGCTTTACTAGCTGCAGCAGCTGTTGTTGCAGCTCGAGACAAGGAGGTGATCCCTGTTGGAGATGAGCTTGCATCAGATAAGAGAGTGAAGGGACGAGGGAGAG
>TRINITY_DN123552_c7_g1_i10 from sample A1 / Example unspliced isoform:CGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTCTGCGAA
CGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTTTTATAG
TTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAGGTTTTG
GTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGATTGTGAG
GCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGGTTTTTG
ATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGgtaagaatgacatctgttaccactatcgctgattagttggtgattggaattttttttattgt
tcagcatttttagcctgtttttttaattgtttggcaagtttttgccatttttttcctgattcttattctctggaccttttcccagttattgccgcacacgattttaattttgagcttgaacttcacaaggtgctttttctgttgtcgtcaatgtctactttattaaggtttgtgttgttggctgcctgcaaagtgaaatg
tttttaggcatataactgctgtcttcattgaaatgtcctgaatgcatctgcctctggagtcagggcatgcctcgttttgtattaagatctcgccttatattgtttggtgtggaattcttatctttgacaacgttatggtcttccgtattagggatttgtttcgtcagctgactgcgaaattattttttttagtcatatag
ttgctgtgtatctttatcgaaatgttgtggatgcatcttccacttgtcttaaataatctcctttgattgttattgtggattttaactttgacaaggttatgttgttgtatgaaagggaaacaattccatgaaattttaaatttgagaatgggttgtctattaaccaggagactaaacctactctgtctgacagttggatt
ctatttatttttatgtttctagCAAGCGAGCCATCAGATTCAGACAGGACACGAGAAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGTGAGTGAGTGAATCCTTCCTCTGCATTAAAATTATGTCGAACTAATGGATTTTGACTG
ATTTCTCTTATTGCTTGAACCAAAGATCTATATTTTTAAAGTAACCACTCTTAATCCATTTCTGTCATGGTTTGAACCTAAGTCCTATATTTTAAAGTCGACATCTATGTGATATTCTGTTGAGAATTGTTAGCTTTACTTTTCATTTTCAGTTCGCTTTTGAGCTCTCATTATTTGATATGCATAGTTACAAGACATTC
TCTTGATACCGGGACAATAAATGCATAGGCATGATTCAAATTTATGATGTTTATGATTCAAATTTACTGATGATGTTTATTCAAATTTTCTTATTGTGCATCTGAAACTTTTCCCATGTGTTGGCTGATACACTTTGTAGAAAGTTGTAGCTTGCATAAAAGGGATATGCCCAACACAGAAGAATATAGCCTGAAAAATA
AATTTTAGAAACTTCATTGGAGGCCTTTGTACTATTATTGCAATGGACAAAAAGCATATTTAAAACTCAGGTTTCCAAAATTTTCTTGAAAAAAGTACATGTCAACCTTTGCCACTTAGGATGGATGCATTGGTACATCTTTAAACTGAAGTTCGATGGCAAACTTCGAAAATCATGCCCTTGACATGGACTGCTTCAAT
TGCAGTAAGAATGCAATATTTCTCA
Intron 4 GTAAGAATGA ... CTTTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 2 | 8 | 2 |
| A2 | 85.71 | 1 | 6 | 0 |
| A3 | 53.85 | 12 | 14 | 7 |
| A4 | 60 | 2 | 3 | 0 |
| A5 | 41.67 | 7 | 5 | 0 |
| A6 | -1 | 0 | 0 | 2 |
| A7 | 45.45 | 6 | 5 | 1 |
| A8 | 66.67 | 1 | 2 | 1 |
| A9 | 46.15 | 7 | 6 | 0 |
| A10 | 47.06 | 9 | 8 | 1 |
>TRINITY_DN107449_c0_g3_i3 from sample A3 / Example spliced isoformTGATCGCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTC
TGCGAACGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTT
TTATAGTTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAG
GTTTTGGTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGAT
TGTGAGGCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGG
TTTTTGATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGTTATTGCCGCACACGATTTTAATTTTGAGCTTGAACTTCACAAGGTGCTTTTTCTG
TTGTCGTCAATGTCTACTTTATTAAGCAAGCGAGCCATCAGATTCAGACAGGACACGAGAAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAGTGAGTGAGTGAATCCTTCCTCTGCATTAAAATTATGTCGAACTAATGGATTTTG
ACTGATTTCTCTTATTGCTTGAACCAAAGATCTATATTTTTAAAGTAACCACTCTTAATCCATTTCTGTCATGGTTTGAACCTAAGTCCTATATTTTAAAGTCGACATCTATGTGATATTCTGTTGAGAATTGTTAGCTTTACTTTTCATTTTCAGTTCGCTTTTGAGCTCTCATTATTTGATATGCATAGTTACAAGAC
ATTCTCTTGATACCGGGACAATAAATGCATAGGCATGATTCAAATTTATGATGTTTATGATTCAAATTTACTGATGATGTTTATTCAAATTTTCTTATTGTGCATCTGAAACTTTTCCCATGTGTTGGCTGATACACTTTGTAGAAAGTTGTAGCTTGCATAAAAGGGATATGCCCAACACAGAAGAATATAGCCTGG
>TRINITY_DN107449_c0_g3_i1 from sample A3 / Example unspliced isoform:TGATCGCGCGCATTCAACATTTCGTTGAATAGTTTCCTTTTGAAAACCATGCTGGGCTTCCACGAGCACATAGTTGCAGACCTCCTTGAAGACAGCAATGGCGGGCTGGTGGTCACGGGTTCGGGCCTCGGCCTCCACAAACTCATCGCGGCTTTAATTAAACTACACGACACGTCACAAGGGATTCTCTTCATTATCTC
TGCGAACGACTTCCAGCGACAAACAATCAAAGAAGAACTTCAACCCCGAACCCTCCAAGCGCCAGAAGTGATAAACAGCGATTATACGTCACAAGACAGAGTTGATCGTTATGGCTATGGCGGAGTCTTCTTCATCACTTCACAGATTCTCGTCGTCGATCTACTTAACGAAAAGGTCCCGCTCAGCAGAGTGGCAGGTT
TTATAGTTCTCAACGCCCATAGATTAACAGAAACCTGCACAGAAGCATTTATACTCCGTCTTTACAGATTTGCGAACAAAAGGGGTTATGTTAGGGCTTTTTCCGACAAACCCCAGGCCATGATTTCTGGGTTTTCGAAACTGGAGCGTATAATGAAAACTTTATTCGTTAAAAAACTGCATCTCTGGCCAAGGTTTCAG
GTTTTGGTTTCCGATATACTGGAGAAAGATCCTCCCGAGGTTATCGATATTAGGGTTCCATTAACTTCTTATATGAAGGGAATTCAGTCTGCTATTATTGAGGTCATGGACGCCTGTTTGAAGGAGCTCAGAAAGACTAATAAAGTGGATGTGGAGGACTTGACGGTGGAGAATGGGCTTTTTAAGTCATTTCATGAGAT
TGTGAGGCAGCAATTGGATTCCATATGGCATATTATTGGAAGGAAGACGAAGCAGCTGGTTGGGGATTTGAAGACATTGAGGAAACTGTTGGATTACTTGGTTCGGTATGATGCTGTGACTTACTTGAAGTATTTGGATGCACTGAGGGTTTCTGAGGGTATGAGGTCGATTTGGATTTTTGCTAGCCCTAGCCATAGGG
TTTTTGATTTTGCGAAGAAACGGGTTTATCAGGTTGTGAGAGCCGATGGCGGAAAAGTGGGGTCTGCGAACGGGTTGGTCAAGGGGGTTGGGAGTGGTAGAGGGGATGCGGGCAAGCGTAGAAAGATAAGCGGCAATGGAAGTGgtaagaatgacatctgttaccactatcgctgattagttggtgattggaattttttt
tattgttcagcatttttagcctgtttttttaattgtttggcaagtttttgccatttttttcctgattcttattctctggaccttttcccagTTATTGCCGCACACGATTTTAATTTTGAGCTTGAACTTCACAAGGTGCTTTTTCTGTTGTCGTCAATGTCTACTTTATTAAGCAAGCGAGCCATCAGATTCAGACAGGA
CACGAGAAACTGAAAATAGTTCATCCAAAGACAATGGGGGCATTGAGCTGGAGGTAGTTGGAGAGGAAATGCCAAAATGGAAGGTGTTGCGAG