sp|P35684|RL3_ORYSJ ----> Large ribosomal subunit protein uL3
Intron 1 GTGAAGTAAA ... TTAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.77 | 721 | 0 | 87 |
| A2 | 15.14 | 785 | 0 | 140 |
| A3 | 13.36 | 973 | 2 | 150 |
| A4 | 8.3 | 641 | 0 | 58 |
| A5 | 10.26 | 577 | 0 | 66 |
| A6 | 11.12 | 3582 | 0 | 448 |
| A7 | 11.56 | 3565 | 0 | 466 |
| A8 | 12.92 | 1807 | 0 | 268 |
| A9 | 11.65 | 3094 | 0 | 408 |
| A10 | 12 | 3007 | 0 | 410 |
>TRINITY_DN120255_c0_g2_i3 from sample A2 / Example spliced isoformGTTTGAACGTGCTAGGGTTTTGGGTTGGCATTAGGGTATATGGTTGAGGAGACTATAAGCGATTCAAAACTTTCACCACCACAGGAGGGGGTGGTGCTGCAGCGGCAGCAGAAGAAGCAGAAGAGATGAGTCACAGGAAGTTTGAGCATCCCAGGCATGGCTCTCTGGGATTTCTCCCTCGCAAGAGAGCTCGTCGACAT
AGAGGAAAAGTGAAGTCATTCCCCAGGGATGACCCAACCAAGCCCTGCAAGCTGACAGCCTTCTTGGGCTACAAGGCCGGCATGACCCACATTGTCAGAGAGGTCGAGAAGCCCGGATCCAAACTTCACAAGAAGGAGACCTGCGAGGCCGTGACGCTAATCGAGACCCCGCCAATGGTGATCGTGGGCGTGGTCGGTTA
TATAAAGACACCCAGAGGGCTTAGAACCCTTAACGCAGTGTGGGCTCAGCACCTTAGCGAGGAGGTGAGGAGGCGGTTTTACAAGAACTGGTACAGGGCCAAGAAAAAGGCTTATACTAAATACGCCAAAAAGTATGACTCCGAGGAGGGTAAGAAGGAAATCCAGGGCGAGCTCGAGAAACTGAAGAAGTATGCTACCG
TAATCAGGGTTCTTGCTCACACCCAGATTAAGAAGATGAAAGGATTGAAGCAGAGAAAGGCTCACCTGATGGAAATCCAGGTGAATGGAGGAACAGTTCCCCAGAAAGTAGATTATGCATATAACTTCTTCGAGAAACAGGTTCCTATTGATGCCCTTTTCCAGAAGGATGAGATGATTGATGTTATTGGTGTAACTAAG
GGAAAAGGGTATGAAGGTGTTGTAACCAGGTGGGGTGTTACAAGATTGCCCAGAAAAACTCACAGGGGTTTGCGTAAGGTTGCTTGTATCGGTGCTTGGCATCCAGCCAGGGTTTCATTTACTGTTGCCAGGGCAGGTCAGAATGGGTACCATCACCGTACTGAGATGAATAAGAAGATCTACAAGATTGGTAAGAAAGA
TCAAGAATCTCACAGTGCAATGACTGAATTTGATAGGACTGAAAAGGATATAACACCAATGGGTGGGTTTCCTCACTACGGTATTGTAAAAGATGATTACATTATGATCAGAGGATGTTGTATGGGTACCAAGAAGCGGGTGGTAACTCTGCGACAGTCATTGTTGAAACAGACTTCTCGTACTGCCTTGGAGGAAATCA
AGTTGAAATTCATTGACACATCCTCTAAGTTTGGACATGGGCGGTTCCAGACAATCCAGGAGAAGGCCAAGATTTATGGTAAATTGAAGGCTTAGGTAATGCTTGCAGTGGATATTTCATCCATGCCTGCAGATAGTCTTTTTGCAGGCCAGGTTTATTTTAAGGATGAATTTTGAATGAACATTGATTTGAGATGCTCT
GATGTGCATTGAATTTTCCCAGATGAGTTTATTCATATTGAGTACCAATTGTCACAAGGCAACCTTTAATAATATTGCGAGTTCGTAAAGTCTTGCCATTTATTTTTAATAGGTACATGAAAAGTTTCATTTATTTAAATGTTGTCTGTCTCTTGAGGATGGACTAAAGTTCAGATTCTGTTGTCTTCTTCGTTGTGTTG
GATGGAAGGTAAATCTCAGTTTTCATGTATGTATTTTTGTTTCCAAGCTTGACTGGACTGATGGTGGAAGGAGGTGATGGCTATGAATTTGCAGATTATGTTGATATTATAGCTTCTTTTGGTTTTATCTGTGGCACCATTTTGAGATAGACTGGCTTGACCTAGAGGGTTCATTTAGTGTAACTTGACAAGTTATTAGT
GCCAAATTCTAGCTTCAGGAAGCCTACAGCTACATGATGACCGAGCATTTCTGACAAACCATTGCTAAAGGGGATTGCTATTTTAATATTGATGGCCGGTAATTGTTAGATGACTGTCATAACAGTGAAAATTGTTGCTCTTGTGGTCATATCTTTTACTGTATATCTGTGAACATCGATAATATCTTGACTCTTTTTAG
ACAAAGACCATGCTCCATTTTATACAGCATGCTGTGTGCCCTAGGAAATACCAAAGGTACAAAATAGTGTATATTATTTTCAGTCTTATAGTTTTATACAACACTGTAGTCAGGTCTTGTTACTTTTGTACAATACTATAGCTATTAATTTTTTTTCATTCCTTGCATTTTTAATTTTTTGGTGATTTTCCAG
>TRINITY_DN120255_c0_g2_i2 from sample A2 / Example unspliced isoform:AGCTCGTCGACATAGAGGAAAAGgtgaagtaaatcaatctctatttttggttttgtttcctgtaagtcctcaaacaggaaaagctaatcttcttctgtatgtatgtgtctgtttttatgttaaatgcagTGAAGTCATTCCCCAGGGATGACCCAACCAAGCCCTGCAAGCTGACAGCCTTCTTGGGCTACAAGGCCGGC
ATGACCCACATTGTCAGAGAGGTCGAGAAGCCCGGATCCAAACTTCACAAGAAGGAGACCTGCGAGGC
Intron 2 GTGAAGAAAA ... ATAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.5 | 1712 | 1 | 159 |
| A2 | 12.55 | 1735 | 3 | 249 |
| A3 | 11.25 | 2194 | 1 | 278 |
| A4 | 9.92 | 1444 | 1 | 159 |
| A5 | 11.06 | 1343 | 3 | 167 |
| A6 | 10.55 | 8786 | 0 | 1036 |
| A7 | 10.63 | 8571 | 6 | 1020 |
| A8 | 11.25 | 4379 | 2 | 555 |
| A9 | 10.67 | 7700 | 0 | 920 |
| A10 | 10.49 | 7604 | 0 | 891 |
>TRINITY_DN104224_c0_g1_i3 from sample A4 / Example spliced isoformATTGCTAGTAGACTAAGGTGGAACATCTCGCAAAGAAAGACTAACCTCTTCACCGATCACACGGCCTAAGTTAACAAACATGAAATTAAAAGAAATAACGCGACTCTTAACCATATATGCTCATACTAAGAAGTAATAGAGGGTATATACGCTGTAGGGTTTTGGGTTTGTATTAGGGTTTGTGTTGACGTTAGGGTTTG
GGTGAGTGGATAACCCATTCAGAGTTCACGACAAATATTAGGTACCGTAGGGTTTCTTTGGGGTGGACAGAAGGAGGAAGCCGGAGGAGGGGGAGCTGCAGCTGAAGAGATGAGTCACAGGAAGTTCGAGCATCCCAGACATGGCTCTCTGGGGTTTCTGCCCCGTAAGAGGGCTCGTCGACACAGAGGAAAAGTGAAGT
CATTCCCCAGGGATGAACCATCGAAGCCCTGTAAGCTGACGGCCTTCTTGGGCTACAAGGCCGGGATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGGAGACCTGCGAGGCTGTGACACTGATTGAGACACCACCAATGGTGATTGTGGGTGTGGTCGCCTATATTAAGACGCCCAGA
GGGCTTCGGACCCTTAACACAGTGTGGGCACAGCACCTCAGTGAGGAGGTGCGTAGGCGGTTTTACAAAAACTGGTATAGGGCTAAGAAGAAGGCTTTCACTAAATATGCCAAAAAGTATGATTCCGAGGAGGGTAAGAAGGAAATCGGGGCGGAGCTCGAGAAAATGAAGAAGTATGCCACCGTCATAAGGGTTCTCGC
TCACACTCAGGTACGTATGCATTCTATGCGGATCATCTAGTCTTGGTTATTTTGCTAGGATAAAAAATGTATTAATAGAACATCCCTGAGGTTATGGAGTTCCATAGAATGGGGTCTGTGTATATGCTCATCTTTATACAAAAGACAACAAACCCAGTGTCCAGCCCCTCGTTGGAAATCACCTGATTCATTCTGGACTA
TCTAAGCTCAAATAGATAGATAGATGGATTTATTTATTAAACTGTTCACTCAACCGAGTGGCCATATGAGATAAAGAAAGGTTTACCTTCTGTGTAACACATTCAAAGAACTTAAAGCAAAATATCACAATAAACAGAGATAGTTGTGTAATGGCGGGAATCAAATTCTTCTCCTGATCTACTTACTTGGGCTGGCTGTG
CTATTGTCTCTGCTTTCAACAGTATTCTTCTTGCAGATCCTACTGGAATGCTAATCCCTTGCCTTTGATATGCAAGCTTGATATCTCCGTGATTTGTGATTATGCTGTACAAATTAGAAAAAAATGCTGCTCGGTTCACTTCTACATTCCCACATATCCAGCACACCATTCCATCTGGTGGCTCCTTGTGTTGTTCCCAT
TTTCTTGTTTCACATCTCAACCTGTGAGAGCTGGTTCTTAGCTGCACTATTATGTGCGCTTTACATGCCAAGTGATGTAGTTTTTTGCTTTCTGATATTGTTTGTTTGTTGAAGCTGTATATGCCGTATTGTTGTTCTCTTTTGATGTGGTCACTTCTATATCCCCCCATCACTTTTTAGTGTGATGGCTTTACTGGCCA
GCCAGTCAGCCATCTGGTTGGCTTGCATCTCACATGCTGTAACTTACTAGATTGAAATGCTTCTTAACCTCTAAAAACACCATTCAATGTACTTGACCAGTTCCCATGACCTGCTAACTGCCTGCTCGGTAGGGACATCTTTGAGGAGTTAGGCTCCTTGGGTTGTTCCCATTTTTCTTGTTTCACATTCAACCTTGTGA
TGTAGTTTTGTTCTCTGATTTTGTTTGTTTGTGGAATCTGTGTATGCCGTATTGTTGTTGTATTTTGATGTGGTCACTTCTATATCCCTCTATTACTCTTTTTAGTGTAATGGCTTTGCTGGCCAGCTAGTCAGCCATCTGGTTGGCTTGCCTTCTCACATGCTGTAACTTACTAGATTGAAATGCTTCTTAACCTCTAA
AAACCTCCATTCAATGTGCTTGACCAGTTCCCATGA
>TRINITY_DN104224_c0_g1_i5 from sample A4 / Example unspliced isoform:GGCTCGTCGACACAGAGGAAAAGgtgaagaaaaaaattccacaaatctctctctccgtgtctctgttttatgcaactagaacaacagaaattaatgttctcagaaactaattttcttcgtctgcatgtgtccgtctgtgttgtgataaatgcagTGAAGTCATTCCCCAGGGATGAACCATCGAAGCCCTGTAAGCTGAC
GGCCTTCTTGGGCTACAAGGCCGGGATGACCCACATCGTCAGAGAGGTCGAGAAGCCCGGATCCAAGCTTCACAAGAAGGAGACCTGCGAGGCTGTGACACTGATTGAGACACCACCAATGGTGATTGTGGGTGTGGTCGCCTATATTAAGACGCCCAGAGGGCTTCGGACCCTTAACACAGTGTGGGCACAGCACCTCA
GTGAGGAGGTGCGTAGGCGGTTTTACAAAAACTGGTATAGGGCTAAGAAGAAGGCTTTCACTAAATATGCCAAAAAGTATGATTCCGAGGAGGGTAAGAAGGAAATCGGGGCGGAGCTCGAGAAAATGAAGAAGTATGCCACCGTCATAAGGGTTCTCGCTCACACTCAGATTAAGAAGATGAAAGGATTGAAGCAGAAG
AAGGCACACCTGATGGAAATACAAGTTAATGGGGGAACAGTTGCCCAGAAAGTAGATTATGCATATAAGTTCTTTGAGAAACAAGTTCCTATTGATGCTCTTTTCCAGAAAGATGAAATGATCGATGTTATTGGTGTTACCAAGGGTAAGGGTTATGAAGGTGTCGTTACCAGGTGGGGTGTTACAAGACTGCCCCGTAA
AACTCACAGGGGTTTGCGTAAGGTTGCTTGTATTGGTGCCTGGCATCCAGCCAGGGTTTCCTTTACTGTTGCCAGGGCTGGTCAGAATGGTTATCATCATCGTACTGAGATGAATAAGAAGATCTACAAGATTGGCAAGATAGATGAGGAATCCCACAAGGCAATGACCGAATTTGATAGGACTGAGAAGGATATAACAC
CAATGGGTGGTTTTCCTCACTATGGTATTGTAAAAGATGATTACATTATGATCAGAGGTTGTTGTATGGGTACCAAGAAGCGGGTGGTTACTTTGCGGCAGTCTTTGCTGAAACAGACTTCTCGTACTGCCTTGGAAGAAATCAAGTTGAAATTCATTGATACATCCTCTAAGTTTGGACATGGGCGATTCCAGACAACC
CAGGAGAAGGCCAAGATATTTGGTAAACTAAAGGCATAGGTAGTGCTAGTAGTGGATGTTTCATCCATGCCCGCATATAGGTTTTTTGCAGGCGAGGTTTATTTCAAGGATTAATTTTGAGAATTGATTTTGCAATCCTGTCGTATATTGAATTTTTTGGATAATTATATTGGGCACTGAATTTCGTAAGGCACCTTCAG
TATATTTGTCGGGATTACATTAAGATTGCCATTTATTTTATTTGTTAGAGCAGCTATATAGAAACAGTCATTTCTTTAATTGATTGATTAAGATAGTTAATGTTGTCCGCCTTCCTGAAAATGGATTAAAGTGTTCCGTGCACATTATGATGTCTTGTGTTTTTTTTCAAAGAAAAAAACTCTGCAGTTGATATTTACGA
GGACAAATGAAAATACACATTTACTACTCTTTTGGCTCAGATCCATGGTTTCGTAATGTCTTCACTTAGACCCGAGACACATACTGACTTCTTTTCAAAATAAACATATCTGCTGTATTCACACCAGACAGTAGACATACTTCCAACCTGACGAACTTTAACTCAGAATAAGAACAAGTACGACAACAAAATGTACTCGA
TCATAAAAAATTGACTTTTGAATCTCATTCACAGGGATATTATCCCTGATCTGCTCAATGAGTAAACCTCCCTGCAAATAGATGTCTTTCTTGTGTTACATGAAATGCAAATCTCCACG