sp|Q9FGW9|GTE10_ARATH ----> Transcription factor GTE10
Intron 1 GTAGGCCATG ... GTAACCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.83 | 19 | 1.3 | 5 |
| A2 | 38.62 | 20.7 | 0.7 | 13 |
| A3 | 20 | 4 | 1.3 | 1 |
| A4 | 100 | 0 | 0.7 | 1 |
| A5 | 37.5 | 5 | 1.3 | 3 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 36.96 | 29 | 2.7 | 17 |
| A8 | 23.68 | 29 | 4.7 | 9 |
| A9 | 31.88 | 47 | 4 | 22 |
| A10 | 41.46 | 24 | 0 | 17 |
>TRINITY_DN35954_c0_g1_i1 from sample A9 / Example spliced isoformTTGAAAACCCTTACCTTTGTTATCACATGGTAATGTAATGCCCTTCCCAATGACTTTACTTCGTCGCAGATTAAACCCCCGATACCCAACCAGTCTTCAAGTGCTACATCAGTCGGAACCGGGCACCTAATGCATCCTCTACTGGACATAATTATCGATCAGATGTATTCTACAAGAATTACCACTGGAACTTGCTGAAA
ACTGATTGCCAAATGACAAAAACTATTTGACTGGAGCACCTTTAGCTGCCTGTAACCTGTTCTCCTATTATTGTCCTCATGAAATGTATTTTAACAGCCTACAAAGTCGCTGGATGCTTTTGTAAAGAACTAACCTGGTGATGGAGAGATTGAGACCAAAGATAAAGCTCAAAGGTGCAGCTAATAAAAAGGCAGCAGAC
AGCGTCGAGTCAGAAAGAAGTCAAGACCAATTCAAGGGTGCACCAGTAATTCCTGGTGCCAATGTAGGTCAAGGAGAAGGTTTCTTCCCAGTACTCACTGGAGGTAATAAACGGAAGCGGGGCCCGAGGGCTGGAGAAAGGAGAACAAAAGAGAAACAACGATTTACTTTTAGCAGGGGCTCAACAGTGCCATCTGTTCT
AGGAGATGAAGAAGAATTTTCAGATCAAGAGGAAAATGAAAGCAAAGAAGACATCGAAGTTGATGTTAAGATGACAGATAAAAGGCAGGTCACAACAGCTAGTAATGGTTTGAGTACTGAATTGGTGGAAGTAAAGGGTCCACAGTCATTTCAACAAAAACAAGGACATTTGAAAGTCAGGGTCAAGGCATCAAAGCTTC
AAGAAGGATCTTCTACTCCTGAGAAGCAAAGGGTTAATGATAATGAAAATGCTAATTCACCAGAAGTTCAGAAGGAATGTCAGAAGCCAGATTCAAAACAACTTGAGAAGGCAAGCAGTTTAATATTGAAGGCTGCAAGATCCTTTGATCAGCCAAGCACTCCAAGGCAAAATAGGTCTAACAAATCTAATGAGATGGCA
AGCAGTCTGCATCAAAATGAGATAGAGAAGTTGCATATTATCTCCGAAAATCAGGAAAAGAATATGGTAGATATATCAGAAGGACTGCATCAAAGGCATGGAAGGCAATCCCATGCTGTTGAAAAGGGTCAAACTGACCAGTCTGAGTACGATGCAAAAGAATTGAAGGATGCTTTGATGGTTGTGAAGAAAATAATGAA
AATGGATGCAGCAGAACCCTTCAACACTCCAGTAAATCCAGTTGCTCTTGGTATCCCAGATTATTTTGATGTCATTGACACACCAATGGACCTCGGCACAGTATGCAGTGCATTGGAAAGAGGTGAAAAGTACATGAATTCTCGGGATGTTTTTAAGGATATTCAGTTTATCTGGGAGAATTGCTATAAATATAACAGTA
AAGGTGATCCCATTTTGGATCTTATGAAAAGGGTGAAAAAGAATTTTGTGAAGTATTGGACTGCGGCTGGTTTATATTATGAGTCACCGAAGAGGACAACTGAGACAGAGCATGAAGGTGGCGAAAACCCAGATGGAAGTGAAGAACCACAAACAGGGAAAACAAAATTCATAGAATCAGTACAGTCTTGTTTGAGAAGT
CCAAAATCAAGGGATGAACAAGTTGAACAGGTTATTCCAGTAAGCGAGGCAAGGGAACAAGTGTATGAGAAAAATGTTGAAGCAACACAGGTTCAACACTGTGTCAAAGAATCAGATACTGAGATGGATATTTTGCACCCTCCTCAAACAGATTCCCTGGTCAAAAACAAGGGGATGAAGCTTAAGATTAAGAAATCGAA
GTCTGAACCTGAAGAACAAGAGAAGACTGTATCAATTGCTGAAAAGACAGATGGCATATCAATTGGAACTGATGAAGATTCTGGACCTAAAGTTGTTGATTCTGCTCAGTCCTTTGAGGAAGATGTTCAACAGAAGGATATAAGCGTAAAATCCAAGACACGACGTCGACATGGAAAATATAACCATAAAGAGGGCTGCC
TATGTGCTGTCTGCAATGCAAAACGACGTAGGCATGAACGTGAAGAAAATGCCCAGCTAGCTAAGAACCAAAGTACAATGGTTGATGTTGATCAATCAGAGAAGATGAAGGAAAAGGTGAGTGTGTTTCTGGACAAGCCTCTTGGTGAAGGGGGTAGAACCAAACCGGAGTATGCATCAAATACAAAATTAATTGCTGGG
ACAGAAGAGCAAGAGCGTAAAGTCAAAGTAGAAACAAGGAAACACAAAGTGAAGGCAGAACTTAAAGATGAACAGGAGGTGCATATGCATGAGGGCAGAGAGACACGAAGGAAAGAAAGCAGAAAGGCACAGCCACAAGTAGAACATGGGTTACAAATGCAATGGGAAAAAGAGGAACAGAAAAAAGAATCAGAAACACA
ACAGGAAGAGGATGAGAAGGAATCACTAATGCAAGAGGCAGATGAGGAACAGCAGCAGGAGGGAAAAGACATGCAAAATCAAGAAGAGGTTCAAGAGGAAGAAGCAAGACGAGGAAAAATGCAAGAGGAAGCAGGGACGCCACTTCAAGAAGGAGATATACAACAAGAGGGTGAGTTTGGGAGATATTATCCTGCAGATT
ATGAGACCCCAGTTCAATATGCAAGTCCTTCAATAATGCAAATCTGCCAGGTCCTGTTTACTCGTGACCATTATTCTGTTTGGAATCGGGCACATTCATTGACTTGTGAACCTTCAAAAACAATCTCAGAAAATAAGATCCTGGCTGCTATTTCGACACTTATGGAGTAGAATCATTTTATCTTAGATGGTTGCATTATG
GTCAGGATAGTTGTTGCATTAAGAACTCCTATATGCAAAAATTTAAGCATTTTCAATTATTAGACATATTTCCTTCTTTGTAAAGAGAGATAAACTTGTTAAATATATTTGTTTAGTGTATGTATAAATATTAATTACTTCTTTAGTGTATTGTTATTTCTCTATAACTATACTAGCACACCCCCGTTATGGGTGAATGG
TGATGCCAAAAACTATTTATTGTGAAAGGTTTAATGATGTAATGTAGAAAGAGTGTTGGTAATGTTATGAATGGATTTTTTTTCTCTTTGGAATCTGTAGGGTTCCCCTGTAATATTTCCTGCAAACTTTGAATACCTATTTTAATATATTGAGTACAAC
>TRINITY_DN35954_c0_g1_i3 from sample A9 / Example unspliced isoform:TCAGAGAAGATGAAGGAAAAGgtaggccatgaaaaataccccaagcagaggcccgaaaatgtcaccaccgatgatgtgcataaacgtggcactagttaaggccaaaagacattaccggccatttgtagagcctgaatttcatcttgaataatgtcttctagactttgtgaggctccattcaaagttgattgtaaccaaag
GTGAGTGTGTTTCTGGACAAGCCTCTTGGTGAAGGGGGTAGAACCAAACCGGAGTATGCATCAAATACAAAATTAATTGCTGGGACAGAAGAGCAAGAGCGTAAAGTCAAAGTAGAAACAAGGAAACACAAAGTGAAGGCAGAACTTAAAGATGAACAGGAGGTGCATATGCATGAGGGCAGAGAGACACGAAGGAAAGA
AAGCAGAAAGGCACAGCCACAAGTAGAACATGGGTTACAAATGCAATGGGAAAAAGAGGAACAGAAAAAAGAATCAGAAACACAACAGGAAGAGGATGAGAAGGAATCACTAATGCAAGAGGCAGATGAGGAACAGCAGCAGGAGGGAAAAGACATGCAAAATCAAGAAGAGGTTCAAGAGGAAGAAGCAAGACGAGGAA
AAATGCAAGAGGAAGCAGGGACGCCACTTCAAGAAGGAGATATACAACAAGAGGGTGAGTTTGGGAGATATTATCCTGCAGATTATGAGACCCCAGTTCAATATGCAAGTCCTTCAATAATGCAAATCTGCCAGGTCCTGTTTACTCGTGACCATTATTCTGTTTGGAATCGGGCACATTCATTGACTTGTGAACCTTCA
AAAACAATCTCAGAAAATAAGATCCTGGCTGCTATTTCGACACTTATGGAGTAGAATCATTTTATCTTAGATGGTTGCATTATGGTCAGGATAGTTGTTGCATTAAGAACTCCTATATGCAAAAATTTAAGCATTTTCAATTATTAGACATATTTCCTTCTTTGTAAAGAGAGATAAACTTGTTAAATATATTTGTTTAG
TGTATGTATAAATATTAATTACTTCTTTAGTGTATTGTTATTTCTCTATAACTATACTAGCACACCCCCGTTATGGGTGAATGGTGATGCCAAAAACTATTTATTGTGAAAGGTTTAATGATGTAATGTAGAAAGAGTGTTGGTAATGTTATGAATGGATTTTTTTTCTCTTTGGAATCTGTAGGGTTCCCCTGTAATAT
TTCCTGCAAACTTTGAATACCTATTTTAATATATTGAGTACAAC
Intron 2 GTTCGTCACT ... ATGAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 8 | 1 | 12 |
| A2 | 71.43 | 6 | 2 | 15 |
| A3 | 47.37 | 20 | 7 | 18 |
| A4 | 83.33 | 2 | 0 | 10 |
| A5 | 46.15 | 7 | 1 | 6 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 75 | 1 | 1 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 100 | 0 | 0 | 4 |
| A10 | 0 | 3 | 0 | 0 |
>TRINITY_DN112140_c1_g1_i15 from sample A3 / Example spliced isoformCCTCGATTACATTGATCCTCTCAATCATTTATTCCCGTCATAGCTTGCTACCACCTGCTAGCTTAGTGTCGTGTTCACGGAGTATTTAATGGTACAAATGCTCGTTCGGCATTCACTGTTACGCTTTTTGCTTCCGATTTTCAAGGTTCCTCTGTGTCTTGCTGCATGGACCTCCCGGATTTGAATTAATGAATTAATGG
AGTTGCCCAAATGTTCGTAAGGAAGCTGTTGTTGTTTGCTGAGAGTGGTTTTGAGGTTTCTGAGCGGAGCTTTGTAGCAATTGCGGAATGCCAGAGTTTGTCTTGAGTTTTACATGCATACTTGCTTTGAGTAGTTAGTGAGGCGTCGACCCCAGCCTTAGCATTCTCTGTATGAAGTAACTAAAGCCCGTTGCATGCAT
CAATTCTTGCTAATTCGAAGTGTAGGCAAGCCTTGCGATAGAAGACCATAGCATTTCCTCTGCGGTTTGCCGTTTCTTGTGTCCAAAATGGCAGAATCTTCTACTAGGAGGAAAAGAAGTAATAATGAGGGCTACCTTGGAATGTTTCCTAAGAAGAAACCCAAGCCTGAACCCAAGGAGAACAAATTCATGTTCAGGGT
TTTGCTTCCTAATGGTTTGATTTTAACTCTAGAGTTGGAGGATGTCGGTGGCCGAGTTTGTAAGGACTGTTAGGAGAAAATGGAAGATGCAATGGGTGAATGAATTGAAAATGGAAACATCATATGCGATGAATCTCGCAACAACCCCATGATCGTAGCTCTGCAGGATGGTGGTATAAACAGTGTCCACACATTTCAGG
ACATGTGGAATGTGACTCCAGAACCACATCTCTTGGTGGAATTACCCCAAGAATACACTTTCCAGACAGCATTGGCTGATTTAATTGACAACTCTTTACAAGCGGTATGGGCCAATGGACCTGGCGAAAGGCGATTGATAAGTGTTAATCTCCAAGATGGAGAGGTATCGATTTTTGATAGTGGCCAGGGAATGGACAGT
AGCACAGAAAATTCTATTGCAAAATGGGGAACCATGGGCTCTTCTAACCATAGAGCTGTTAGAGGTTCTGCAATAGGATTAAAGCCACCATATTTGAAGCCATACTTTGGAATGTATGGTTTTGGAGGCCTTGCTGCTTCCATGCATCTGGGAGGGCTGGTTATGGTATCATCAAAGACAAAAATGTCAAAGAAGGTAGT
TACATTAAAGCTGGAAAAGGACACACTCGTACAGAAATCAAAAGCAGATCGGATCTGGAGGACAGGAGGAGACATAAGGGAGGTCTCACAAGAAGAAAAAGACATGTCTCCTCATGGAAGTTTTACAAAGGTGCATATATCCAAGTTAAAGTCAAATTATTGGAATGAAGATCAACTTAAATGTATGCTGAAAGACATCT
ACTTTCCATATATTCAGAATGATGATGGCTTTGATGAATCTGTTCGGACAAGCACTCCAGTAGAATTTGAGGTAAATGGTACAAACTTGACTGAGGTAGCAGGAGGTGAGGTCGTTGCAACAAATTTGGCAGCTTGTAATGGTCCGCCATTTGTTCTGGAGCTTCACTTAAGGAAAAAAAATGATTTGCAGGGACATGCA
AAATCTGAAGCAAACAGGAGTGTTGCTGAAGACAGTGCCAATGCAAGGATCACGTGTTTTTACTTCCCAATAATTCAGGGGAAAGAAAGTGTGGACACTATTTTAGAAAAGCTTGAGGTGGAGGGTTATGGCGTGGGGGAGAGCTTTGAGACACTCTGCCGTGTTTCTATACGTCGATTAGGACGTTTACTTCCTGATGC
ACGCTGGGGGCGTCTTCCCTTTATGGAACCCAAGCGCAAGCGAGTAGAGAATGCTCTGGTTCCACAACGTTGTTTCAAAAGAGTCAAATGTTTTGTTGAATCAGACGCTGGATTTGCGCCGACAACATCAAAAACAGATCTTGCTCACAAGCATCCATTTACTCTTGTATTGAAGAACCTAGGACGCAGACCTGATAATA
GTGAGTCTGCAATATGTATGGAAATAGAAAGAGAAGGCAGGCAGATAACACCAGTTCAACTTGAGAAGGAGTACCAAGATTGGTTAAAAGCTATGCATGAAAGCTATGATGAAGAGGTAGAGTGTGGTGATGGGGAGGCTACACTGATATTAAATCCTAGTAATGGGAAGGATCTTGGAATTTCTAACAAGGTTATACGA
GTTCTTACCCAGATAAAGAGGAAAGGATATCTATGGAAGGCTTCTCAAAAGATAAAGATCCTTAAAGGAGCTGCTGATCCACGAAAGGACCTATATGCTACTTTGGAGTATATCTTGTGTGAGGGATTCGATGGTGATCCAGGTGAAGCTCGTATGATCTGCAGGCCCATGGAATGTCCTGAAGTGGAAGGTAGCAAATT
GTTGTTCACCAATGGAAATGCAAGCTTTGAACTCGGGAGTTCCAGATCTCTTCCCCTGGATCTGATATCCTCTGGAAAGTGTCAGGCTCTGGATGAGGATACATGGAAGAGACAGGCTGAGAGGAAACGGTTGAAGACTCCTTCATTTATTGATGTATTGCGTACAGATCAGGTCCTTAAATTTGATGTAGACAAGGGAT
TTCCCAAAGGAGAAACTGTTCAAGCAGGATTTGTCTTTCCAAAAGAGATTATTGCAGTTGTACGGCCACATGCTTTCAAAGCAGCAGATAATATGATGAGTAAGAGCTCAGATGACGTAGATCAGAAATCGGTTGTTAAGGATAACATGGAAATGAAGATGGATATTCATGTCATCCCTTGGGATGACTCTGATCAAAAC
ACTTTACCCACTGGTGATGTGAAATTCAGCATGCAGACAAAAACTTGTTCTCGGAATGGAATTCATGGTTTGTATAGTTTTCGTATGGAAGGATCCAGACTGAATGAAATGTTTGAGAAAGTTGGGAGATACAGATTTATATTTTCTCTGGTGAACAATCCATATGCAACTTTGATGTCAGCAGAAGAAGATCTGTTTGT
AGTAGCATCAGAGAAAGTTGGGAAGTGGAAACTTAGGTTTGAAATGTCAGATACCGAGTGTACCGAAATTAAACGACCTAATGTAAGGCTGGGTTCTGATATTGGACCTCTTTATATCTCATGTTATGATGTCTACTCAAATCGGATGGCTTTCAAGGCCTATCCTCAGCTTGAAGTGCATGTTCATAAGATGGAAACAC
CAGTGAAGATTAAGATAGAGAAAGCATCTGGATGTCTCACCCCAGACAGAATGTATTTCCAAATTTCGAAAATTTTGTTGGGGGGAGGCAAACTGGATGAGTTGCGACCTAGTTTTGAAGCATTCTTAAGAGTTGGTTCCAAGGACTCTTGTTATGCAGAAATTCCTCTAGCAGTCTTACCAGGAGATATGTGCTCTGTG
AAGTTGAGTAATGCTGAACTGGATAACTGCTTGCGTCCTGGAGATGTGATTCATAAACTTAAGCTGCAGGTGCTGGATGCTTATGAAAATCCTGTTGAGAAAGGACGGAAAATAAAGGTGGAATTGACTGGATTAGAGTTCCAAGACCAGGAGTTCCAAGACCAGGATGACCCAAATCGGGAGTATCGGGAGGTTGATGA
TCAAGGTTGGGTAAACTTTGGAGGGCTACTGAAAGTTACAGGCAAATATGGCTCAAAAGGTTGCGTTCGTGTGTCTTCAGGCACAAAAAATTTGCTTATCAAAGAGTTTGAACTTCTATCGAGGGTACTCAAAGTTGTATCTGGGATTCCGGAACAAGCTCATTCTGGTTCTGTTCTAAAGGATGTTGTGTTTGGAATCT
TTGATGATGAAGGGAATATTGATTCCAAGATGAATGGGTGCCATCATACATTGACAGTTGATTTGTGTACTTTGGGTTCTGTTCAATACACCTTCATTGAGGGAAAGTGTACAGTGTCTAAACTTCAGCTTCCAGAAGTCTCTGGATTGTTGGAATTTAAAGCTTTGCATTCCTGGCATACGGAGCTCTTTGTGTGTATT
AAGGTTGATGTTCATCCAAATCCACGGCTAGAGATGGTTAGTGTTCCAGAGCAACCTTTGGATGATGGAGCAGTATGTCACGCTTACGATGAGAGCACAGCAAGTCAAACACAAATAAGTAGTCAAATTATGTTGAATGAAGCAAAATTGTTTATCGAGACTTTAATGAGTGAGACGACGAAATGGGAGCATGAGATGAA
AATAACTGCAACCAAAGTTAAAAGGCGTGAAGATGAACTTAACAAACTGGAAAGTAGAAAAAATGAAGTGAATATATCTCTGAGTGACTTGGAAAGAGAGCTAAATAAATGTATTTCAGTTTCTTCTTCAAAAAGTGATGGGAAAGGAATGCCAAATCAAGGTTCTCATAGTGTGGATGACACTTTAGAAGAAATCAAAA
GACAAGGAACGACTGCATCTGGCCTATGGCTCGACTTAAGTAGGCGGACTGTTCAATCAAGAGAAAGCCCCATCTTACAGGATGTGGTTGGAATTGTTGCGTTGTTAGGGAAAGTAGAAGATGATGTCCTGAGTTGGGCACTATCTGAGTATTTGGGAAGGGAAAACATGCTTGCAGTTGTCTGCAAGTCTCGTGCAGGG
GCTAAAGCATTTGAGCAATATGATCACAGTGGTACCATAGCGACAGAGACGGGTATCCATGGTCTAGCAAGTGCGCAAAAAGCAAGAATTAATGGAAGGTTCCGTGTGATTTGCCTTGAAGACGTAAGGCCTTATGAGGGAGGATTCAAAGTTGATGATCCACAAAAGCAACTGATTATAGAGGATCCAAAATTTTCAGA
TGGAATCCTACCTGAAGGATATATGGGATATGCTGTAAATATGATAAAATTGGATCAAGAGGAGCTATGCCTTTCAACCTCATCAGGGATTGGATTGAGAGGAACGCTATTTTTTAATCTTTTCTCATATCTGCAAGTCTACAAAACAAGAAACCACATGAAACAGGCGATATCTTATATAAGAGATGGGGCTATCTCAT
TGGATGGAGGTATCCTATGGAGAAAAGGTGTTATTGAATGTGGAAACAGGGAGAAAGTTGCTGTGATGTTTCCAACTACCTCAGCAAAAACAGCGCCTTTTACCTCAGCAAAAGCAATGCCCTCACTCTTCACTCTGCGAGTTGATATCCAAGAAAAAATTGCAAGGAAGAAGGAAGAAAAAGAATTGATAGAGAAACTA
ACAAATCGTGCTCGTGACAAACTGGAACGTTCAAAGAAAGAATTTGAAGAGAAAAAGAAAGAATTTGAAGAGAGGGAGGCTCGGAAGAACATGTTTGTGGAAAATGCTCGGGAACAAGGCTTATTTTTGGAGAACCACGAGCTGTGTGATTAAATCATAAATTTTTAGTTATGATCTTTGTATGTAATCATTTATTTTGG
TCGTTTGCTCTGAACAATTCACAGAAGACTGATTACATTTTGAATTATCATTTCCTTGATCTTCATGTAAATATACATACAAAGAATTTTCATGTAAAGATACTACAATGTCAGAAAGTTTGGGCCGATGGCTCTTGTACAGCTATTTATGTTAAAACACTAAACAAGGAGGC
>TRINITY_DN112140_c1_g1_i6 from sample A3 / Example unspliced isoform:CCTCGATTACATTGATCCTCTCAATCATTTATTCCCGTCATAGCTTGCTACCACCTGCTAGCTTAGTGTCGTGTTCACGGAGTATTTAATGGTACAAATGCTCGTTCGGCATTCACTGTTACGgttcgtcactcggttgctctgtctgtaattttcccaagtggtccgtctgtagactgcccagtgttccaatcctcgga
gcggttctttttcgtacattactgaactagttttatttgataatgaatgcagCTTTTTGCTTCCGATTTTCAAGGTTCCTCTGTGTCTTGCTGCATGGACCTCCCGGATTTGAATTAATGAATTAATGGAGTTGCCCAAATGTTCGTAAGGAAGCTGTTGTTGTTTGCTGAGAGTGGTTTTGAGGTTTCTGAGCGGAGCT
TTGTAGCAATTGCGGAATGCCAGAGTTTGTCTTGAGTTTTACATGCATACTTGCTTTGAGTAGTTAGTGAGGCGTCGACCCCAGCCTTAGCATTCTCTGTATGAAGTAACTAAAGCCCGTTGCATGCATCAATTCTTGCTAATTCGAAGTGTAGGCAAGCCTTGCGATAGAAGACCATAGCATTTCCTCTGCGGTTTGCC
GTTTCTTGTGTCCAAAATGGCAGAATCTTCTACTAGGAGGAAAAGAAGTAATAATGAGGGCTACCTTGGAATGTTTCCTAAGAAGAAACCCAAGCCTGAACCCAAGGAGAACAAATTCATGTTCAGGGTTTTGCTTCCTAATGGTTTGATTTTAACTCTAGAGTTGGAGGATGTCGGTGGCCGAGTTTGTAAGGACTGTT
AGGAGAAAATGGAAGATGCAATGGGTGAATGAATTGAAAATGGAAACATCATATGCGATGAATCTCGCAACAACCCCATGATCGTAGCTCTGCAGGATGGTGGTATAAACAGTGTCCACACATTTCAGGACATGTGGAATGTGACTCCAGAACCACATCTCTTGGTGGAATTACCCCAAGAATACACTTTCCAGACAGCA
TTGGCTGATTTAATTGACAACTCTTTACAAGCGGTATGGGCCAATGGACCTGGCGAAAGGCGATTGATAAGTGTTAATCTCCAAGATGGAGAGGTATCGATTTTTGATAGTGGCCAGGGAATGGACAGTAGCACAGAAAATTCTATTGCAAAATGGGGAACCATGGGCTCTTCTAACCATAGAGCTGTTAGAGGTTCTGC
AATAGGATTAAAGCCACCATATTTGAAGCCATACTTTGGAATGTATGGTTTTGGAGGCCTTGCTGCTTCCATGCATCTGGGAGGGCTGGTTATGGTATCATCAAAGACAAAAATGTCAAAGAAGGTAGTTACATTAAAGCTGGAAAAGGACACACTCGTACAGAAATCAAAAGCAGATCGGATCTGGAGGACAGGAGGAG
ACATAAGGGAGGTCTCACAAGAAGAAAAAGACATGTCTCCTCATGGAAGTTTTACAAAGGTGCATATATCCAAGTTAAAGTCAAATTATTGGAATGAAGATCAACTTAAATGTATGCTGAAAGACATCTACTTTCCATATATTCAGAATGATGATGGCTTTGATGAATCTGTTCGGACAAGCACTCCAGTAGAATTTGAG
GTAAATGGTACAAACTTGACTGAGGTAGCAGGAGGTGAGGTCGTTGCAACAAATTTGGCAGCTTGTAATGGTCCGCCATTTGTTCTGGAGCTTCACTTAAGGAAAAAAAATGATTTGCAGGGACATGCAAAATCTGAAGCAAACAGGAGTGTTGCTGAAGACAGTGCCAATGCAAGGATCACGTGTTTTTACTTCCCAAT
AATTCAGGGGAAAGAAAGTGTGGACACTATTTTAGAAAAGCTTGAGGTGGAGGGTTATGGCGTGGGGGAGAGCTTTGAGACACTCTGCCGTGTTTCTATACGTCGATTAGGACGTTTACTTCCTGATGCACGCTGGGGGCGTCTTCCCTTTATGGAACCCAAGCGCAAGCGAGTAGAGAATGCTCTGGTTCCACAACGTT
GTTTCAAAAGAGTCAAATGTTTTGTTGAATCAGACGCTGGATTTGCGCCGACAACATCAAAAACAGATCTTGCTCACAAGCATCCATTTACTCTTGTATTGAAGAACCTAGGACGCAGACCTGATAATAGTGAGTCTGCAATATGTATGGAAATAGAAAGAGAAGGCAGGCAGATAACACCAGTTCAACTTGAGAAGGAG
TACCAAGATTGGTTAAAAGCTATGCATGAAAGCTATGATGAAGAGGTAGAGTGTGGTGATGGGGAGGCTACACTGATATTAAATCCTAGTAATGGGAAGGATCTTGGAATTTCTAACAAGGTTATACGAGTTCTTACCCAGATAAAGAGGAAAGGATATCTATGGAAGGCTTCTCAAAAGATAAAGATCCTTAAAGGAGC
TGCTGATCCACGAAAGGACCTATATGCTACTTTGGAGTATATCTTGTGTGAGGGATTCGATGGTGATCCAGGTGAAGCTCGTATGATCTGCAGGCCCATGGAATGTCCTGAAGTGGAAGGTAGCAAATTGTTGTTCACCAATGGAAATGCAAGCTTTGAACTCGGGAGTTCCAGATCTCTTCCCCTGGATCTGATATCCT
CTGGAAAGTGTCAGGCTCTGGATGAGGATACATGGAAGAGACAGGCTGAGAGGAAACGGTTGAAGACTCCTTCATTTATTGATGTATTGCGTACAGATCAGGTCCTTAAATTTGATGTAGACAAGGGATTTCCCAAAGGAGAAACTGTTCAAGCAGGATTTGTCTTTCCAAAAGAGATTATTGCAGTTGTACGGCCACAT
GCTTTCAAAGCAGCAGATAATATGATGAGTAAGAGCTCAGATGACGTAGATCAGAAATCGGTTGTTAAGGATAACATGGAAATGAAGATGGATATTCATGTCATCCCTTGGGATGACTCTGATCAAAACACTTTACCCACTGGTGATGTGAAATTCAGCATGCAGACAAAAACTTGTTCTCGGAATGGAATTCATGGTTT
GTATAGTTTTCGTATGGAAGGATCCAGACTGAATGAAATGTTTGAGAAAGTTGGGAGATACAGATTTATATTTTCTCTGGTGAACAATCCATATGCAACTTTGATGTCAGCAGAAGAAGATCTGTTTGTAGTAGCATCAGAGAAAGTTGGGAAGTGGAAACTTAGGTTTGAAATGTCAGATACCGAGTGTACCGAAATTA
AACGACCTAATGTAAGGCTGGGTTCTGATATTGGACCTCTTTATATCTCATGTTATGATGTCTACTCAAATCGGATGGCTTTCAAGGCCTATCCTCAGCTTGAAGTGCATGTTCATAAGATGGAAACACCAGTGAAGATTAAGATAGAGAAAGCATCTGGATGTCTCACCCCAGACAGAATGTATTTCCAAATTTCGAAA
ATTTTGTTGGGGGGAGGCAAACTGGATGAGTTGCGACCTAGTTTTGAAGCATTCTTAAGAGTTGGTTCCAAGGACTCTTGTTATGCAGAAATTCCTCTAGCAGTCTTACCAGGAGATATGTGCTCTGTGAAGTTGAGTAATGCTGAACTGGATAACTGCTTGCGTCCTGGAGATGTGATTCATAAACTTAAGCTGCAGGT
GCTGGATGCTTATGAAAATCCTGTTGAGAAAGGACGGAAAATAAAGGTGGAATTGACTGGATTAGAGTTCCAAGACCAGGAGTTCCAAGACCAGGATGACCCAAATCGGGAGTATCGGGAGGTTGATGATCAAGGTTGGGTAAACTTTGGAGGGCTACTGAAAGTTACAGGCAAATATGGCTCAAAAGGTTGCGTTCGTG
TGTCTTCAGGCACAAAAAATTTGCTTATCAAAGAGTTTGAACTTCTATCGAGGGTACTCAAAGTTGTATCTGGGATTCCGGAACAAGCTCATTCTGGTTCTGTTCTAAAGGATGTTGTGTTTGGAATCTTTGATGATGAAGGGAATATTGATTCCAAGATGAATGGGTGCCATCATACATTGACAGTTGATTTGTGTACT
TTGGGTTCTGTTCAATACACCTTCATTGAGGGAAAGTGTACAGTGTCTAAACTTCAGCTTCCAGAAGTCTCTGGATTGTTGGAATTTAAAGCTTTGCATTCCTGGCATACGGAGCTCTTTGTGTGTATTAAGGTTGATGTTCATCCAAATCCACGGCTAGAGATGGTTAGTGTTCCAGAGCAACCTTTGGATGATGGAGC
AGTATGTCACGCTTACGATGAGAGCACAGCAAGTCAAACACAAATAAGTAGTCAAATTATGTTGAATGAAGCAAAATTGTTTATCGAGACTTTAATGAGTGAGACGACGAAATGGGAGCATGAGATGAAAATAACTGCAACCAAAGTTAAAAGGCGTGAAGATGAACTTAACAAACTGGAAAGTAGAAAAAATGAAGTGA
ATATATCTCTGAGTGACTTGGAAAGAGAGCTAAATAAATGTATTTCAGTTTCTTCTTCAAAAAGTGATGGGAAAGGAATGCCAAATCAAGGTTCTCATAGTGTGGATGACACTTTAGAAGAAATCAAAAGACAAGGAACGACTGCATCTGGCCTATGGCTCGACTTAAGTAGGCGGACTGTTCAATCAAGAGAAAGCCCC
ATCTTACAGGATGTGGTTGGAATTGTTGCGTTGTTAGGGAAAGTAGAAGATGATGTCCTGAGTTGGGCACTATCTGAGTATTTGGGAAGGGAAAACATGCTTGCAGTTGTCTGCAAGTCTCGTGCAGGGGCTAAAGCATTTGAGCAATATGATCACAGTGGTACCATAGCGACAGAGACGGGTATCCATGGTCTAGCAAG
TGCGCAAAAAGCAAGAATTAATGGAAGGTTCCGTGTGATTTGCCTTGAAGACGTAAGGCCTTATGAGGGAGGATTCAAAGTTGATGATCCACAAAAGCAACTGATTATAGAGGATCCAAAATTTTCAGATGGAATCCTACCTGAAGGATATATGGGATATGCTGTAAATATGATAAAATTGGATCAAGAGGAGCTATGCC
TTTCAACCTCATCAGGGATTGGATTGAGAGGAACGCTATTTTTTAATCTTTTCTCATATCTGCAAGTCTACAAAACAAGAAACCACATGAAACAGGCGATATCTTATATAAGAGATGGGGCTATCTCATTGGATGGAGGTATCCTATGGAGAAAAGGTGTTATTGAATGTGGAAACAGGGAGAAAGTTGCTGTGATGTTT
CCAACTACCTCAGCAAAAACAGCGCCTTTTACCTCAGCAAAAGCAATGCCCTCACTCTTCACTCTGCGAGTTGATATCCAAGAAAAAATTGCAAGGAAGAAGGAAGAAAAAGAATTGATAGAGAAACTAACAAATCGTGCTCGTGACAAACTGGAACGTTCAAAGAAAGAATTTGAAGAGAAAAAGAAAGAATTTGAAGA
GAGGGAGGCTCGGAAGAACATGTTTGTGGAAAATGCTCGGGAACAAGGCTTATTTTTGGAGAACCACGAGCTGTGTGATTAAATCATAAATTTTTAGTTATGATCTTTGTATGTAATCATTTATTTTGGTCGTTTGCTCTGAACAATTCACAGAAGACTGATTACATTTTGAATTATCATTTCCTTGATCTTCATGTAAA
TATACATACAAAGAATTTTCATGTAAAGATACTACAATGTCAGAAAGTTTGGGCCGATGGCTCTTGTACAGCTATTTATGTTAAAACACTAAACAAGGAGGC
Intron 3 GTGGGATGGG ... CTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 54 | 12 | 12 |
| A2 | 16.03 | 55 | 10 | 11 |
| A3 | 16.52 | 48 | 4 | 15 |
| A4 | 19.44 | 29 | 9 | 5 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 42.86 | 2 | 2 | 1 |
| A7 | 8.89 | 41 | 3 | 5 |
| A8 | 17.43 | 45 | 14 | 5 |
| A9 | 14.94 | 37 | 8 | 5 |
| A10 | 18.75 | 52 | 12 | 12 |
>TRINITY_DN118195_c0_g2_i3 from sample A1 / Example spliced isoformGTTATCACATGGTAATGTAATGCCCTTCCCAATGACTTTACTTCGTCGCAGATTAAACCCCCGATACCCAACCAGTCTTCAAGTGCTACATCAGTCGGATCCGGGCACCTAATGCATCCTCTACTGGACATAATTATCGATCAGATGTATTCTACAAGAATTACCACTGGAACTTGCTGAAAACTGATTGCCAAATGACA
AAAACTATTTGACTGGAGCACCTTTAGCTGCCTGTAACCTGTTCTCCTATTATTGTCCTCATGAAATGTATTTTAACAGCCTACAAAGTCGCTGGATGCTTTTGTAAAGAACTAACCTGGTGATGGAGAGATTGAGACCAAAGATAAAGCTCAAAGGTGCAGCTAATAAAAAGGCAGCAGACAGCGTCGAGTCAGAAAGA
AGTCAAGACCAATTCAAGGGTGCACCAGTAATTCCTGGTGCCAATGTAGGTCAAGGAGAAGGTTTCTTCCCAGTACTCACTGGAGGTAATAAACGGAAGCGGGGCCCGAGGGCTGGAGAAAGGAGAACAAAAGAGAAACAACGATTTACTTTTAGCAGGGGCTCAACAGTGCCATCTGTTCTAGGAGATGAAGAAGAATT
TTCAGATCAAGAGGAAAATGAAAGCAAAGAAGACATCGAAGTTGATGTTAAGATGACAGATAAAAGGCAGGTCACAACAGCTAGTAATGGTTTGAGTACTGAATTGGTGGAAGTAAAGGGTCCACAGTCATTTCAACAAAAACAAGGACATTTGAAAGTCAGGGTCAAGGCATCAAAGCTTCAAGAAGGATCTTCTACTC
CTGAGAAGCAAAGGGTTAATGATAATGAAAATGCTAATTCACCAGAAGTTCAGAAGGAATGTCAGAAGCCAGATTCAAAACAACTTGAGAAGGCAAGCAGTTTAATATTGAAGGCTGCAAGATCCTTTGATCAGCCAAGCACTCCAAGGCAAAATAGGTCTAACAAATCTAATGAGATGGCAAGCAGTCTGCATCAAAAT
GAGATAGAGAAGTTGCATATTATCTCCGAAAATCAGGAAAAGAATATGGTAGATATATCAGAAGGACTGCATCAAAGGCATGGAAGGCAATCCCATGCTGTTGAAAAGGGTCAAACTGACCAGTCTGAGTACGATGCAAAAGAATTGAAGGATGCTTTGATGGTTGTGAAGAAAATAATGAAAATGGATGCAGCAGAACC
CTTCAACACTCCAGTAAATCCAGTTGCTCTTGGTATCCCAGATTATTTTGATGTCATTGACACACCAATGGACCTCGGCACAGTATGCAGTGCATTGGAAAGAGGTGAAAAGTACATGAATTCTCGGGATGTTTTTAAGGATATTCAGTTTATCTGGGAGAATTGCTATAAATATAACAGTAAAGGTGATCCCATTTTGG
ATCTTATGAAAAGGGTGAAAAAGAATTTTGTGAAGTATTGGACTGCGGCTGGTTTATATTATGAGTCACCGAAGAGGACAACTGAGACAGAGCATGAAGGTGGCGAAAACCCAGATGGAAGTGAAGAACCACAAACAGGGAAAACAAAATTCATAGAATCAGTACAGTCTTGTTTGAGAAGTCCAAAATCAAGGGATGAA
CAAGTTGAACAGGTTATTCCAGTAAGCGAGGCAAGGGAACAAGTGTATGAGAAAAATGTTGAAGCAACACAGGTTCAACACTGTGTCAAAGAATCAGATACTGAGATGGATATTTTGCACCCTCCTCAAACAGATTCCCTGGTCAAAAACAAGGGGATGAAGCTTAAGATTAAGAAATCGAAGTCTGAACCTGAAGAACA
AGAGAAGACTGTATCAATTGCTGAAAAGACAGATGGCATATCAATTGGAACTGATGAAGATTCTGGACCTAAAGTTGTTGATTCTGCTCAGTCCTTTGAGGAAGATGTTCAACAGAAGGATATAAGCGTAAAATCCAAGACACGACGTCGACATGGGTAATTTTCTTTATGCTTCCTTTTGAAGAAATCTCAAATCTTTT
GTCTGTTTACATGGGACAATTCTTTTGGCAGAGGATAAGTTTCACTGTCAGGTTTTACATGCACAATACCAGAAGAAGAGCAAATGGGAATATAACACTTGCCACGTTCTTGACACTAACAAGAGGTGT
>TRINITY_DN118195_c0_g2_i2 from sample A1 / Example unspliced isoform:GTTATCACATGGTAATGTAATGCCCTTCCCAATGACTTTACTTCGTCGCAGATTAAACCCCCGATACCCAACCAGTCTTCAAGTGCTACATCAGTCGGATCCGGGCACCTAATGCATCCTCTACTGGACATAATTATCGATCAGATGTATTCTACAAGAATTACCACTGGAACTTGCTGAAAACTGATTGCCAAATGACA
AAAACTATTTGACTGGAGCACCTTTAGCTGCCTGTAACCTGTTCTCCTATTATTGTCCTCATGAAATGTATTTTAACAGCCTACAAAGTCGCTGGATGCTTTTGTAAAGAACTAACCTGGTGATGGAGAGATTGAGACCAAAGATAAAGCTCAAAGGTGCAGCTAATAAAAAGGCAGCAGACAGCGTCGAGTCAGAAAGA
AGTCAAGACCAATTCAAGGGTGCACCAGTAATTCCTGGTGCCAATGTAGGTCAAGGAGAAGGTTTCTTCCCAGTACTCACTGGAGGTAATAAACGGAAGCGGGGCCCGAGGGCTGGAGAAAGGAGAACAAAAGAGAAACAACGATTTACTTTTAGCAGGGGCTCAACAGTGCCATCTGTTCTAGGAGATGAAGAAGAATT
TTCAGATCAAGAGGAAAATGAAAGCAAAGAAGACATCGAAGTTGATGTTAAGATGACAGATAAAAGGCAGGTCACAACAGCTAGTAATGGTTTGAGTACTGAATTGGTGGAAGTAAAGGGTCCACAGTCATTTCAACAAAAACAAGGACATTTGAAAGTCAGGGTCAAGGCATCAAAGCTTCAAGAAGGATCTTCTACTC
CTGAGAAGCAAAGGGTTAATGATAATGAAAATGCTAATTCACCAGAAGTTCAGAAGGAATGTCAGAAGCCAGATTCAAAACAACTTGAGAAGGCAAGCAGTTTAATATTGAAGGCTGCAAGATCCTTTGATCAGCCAAGCACTCCAAGGCAAAATAGGTCTAACAAATCTAATGAGATGGCAAGCAGTCTGCATCAAAAT
GAGATAGAGAAGTTGCATATTATCTCCGAAAATCAGGAAAAGAATATGGTAGATATATCAGAAGGACTGCATCAAAGGCATGGAAGGCAATCCCATGCTGTTGAAAAGGGTCAAACTGACCAGTCTGAGTACGATGCAAAAGAATTGAAGGATGCTTTGATGGTTGTGAAGAAAATAATGAAAATGGATGCAGCAGAACC
CTTCAACACTCCAGTAAATCCAGTTGCTCTTGGTATCCCAGATTATTTTGATGTCATTGACACACCAATGGACCTCGGCACAGTATGCAGTGCATTGGAAAGAGGTGAAAAGTACATGAATTCTCGGGATGTTTTTAAGGATATTCAGTTTATCTGGGAGAATTGCTATAAATATAACAGTAAAGGTGATCCCATTTTGG
ATCTTATGAAAAGGGTGAAAAAGAATTTTGTGAAGTATTGGACTGCGGCTGGTTTATATTATGAGTCACCGAAGAGGACAACTGAGACAGAGCATGAAGGTGGCGAAAACCCAGATGGAAGTGAAGAACCACAAACAGGGAAAACAAAATTCATAGAATCAGTACAGTCTTGTTTGAGAAGTCCAAAATCAAGGGATGAA
CAAGgtgggatggggttaacatattctgtatacatctctattttcagTTGAACAGGTTATTCCAGTAAGCGAGGCAAGGGAACAAGTGTATGAGAAAAATGTTGAAGCAACACAGGTTCAACACTGTGTCAAAGAATCAGATACTGAGATGGATATTTTGCACCCTCCTCAAACAGATTCCCTGGTCAAAAACAAGGGGA
TGAAGCTTAAGATTAAGAAATCGAAGTCTGAACCTGAAGAACAAGAGAAGACTGTATCAATTGCTGAAAAGACAGATGGCATATCAATTGGAACTGATGAAGATTCTGGACCTAAAGTTGTTGATTCTGCTCAGTCCTTTGAGGAAGATGTTCAACAGAAGGATATAAGCGTAAAATCCAAGACACGACGTCGACATGGG
TAATTTTCTTTATGCTTCCTTTTGAAGAAATCTCAAATCTTTTGTCTGTTTACATGGGACAATTCTTTTGGCAGAGGATAAGTTTCACTGTCAGGTTTTACATGCACAATACCAGAAGAAGAGCAAATGGGAATATAACACTTGCCACGTTCTTGACACTAACAAGAGGTGT