NA ----> NA
Intron 1 GTACGCTGTT ... TTGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | 0 | 4 | 0 | 0 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 2 | 0 |
| A6 | 17.42 | 64 | 7 | 20 |
| A7 | 21.74 | 27 | 3 | 12 |
| A8 | 23.81 | 48 | 8 | 22 |
| A9 | 30.77 | 27 | 7 | 17 |
| A10 | 0 | 4 | 0 | 0 |
>TRINITY_DN44068_c0_g1_i17 from sample A9 / Example spliced isoformGCTTTCGGAGCTCTCTACTGCCAAACAGAAGATGGCAAGTGCCGGGATGTCTTTCGTTTGCAAGTTATTCCTGCTTCTCATTGTTGGCTGCATTTCTGCTGCGAATCCGTCAGCTGCTTCATACTATCAATCCCCACCCCCAAAGCCTTACCCCTACAAATCTCCTCCTCCTCCATCTCACGTTCCTTCTCCAATCCATC
ATAAGCCGCCTCCTGCACCCACAGTCGTTCCAAAGCCACCAGTAGTGGAGAAACCTCCTCCTAAGGCGGTGCCAGTTTCTCCTCCATACAAGTACAAATCCCCACCTCCGCCAAAGCCAACTCCTGCACCATACGCTAAGCCTCCGCCAGTTGACAAGCCCCTTCCTCCTCCTTCACCACCAAAATCATGGCCAGCTCCT
CTTCCTCCCCATCACAAACCTTCTCCATTGGCCAAACCACCAAAAGCAACTCCATCCCCACCACAAAAACCAGAAAAACCATACGGGTACAAATCTCCTCCTCCCCCAACCCATGTTGTAAGTCCTACTCCCCCCAAAGCAGTACCTACTTTTCCCCCTTCCCATCCCAAACCACCCGTCTACCCGTCACCACCTATACA
CCACCACTCTTACAAGTCTCCTCCGCCGCCGCCATATTAGATTCTGCAAAGCAAATTACGGATGATAAGGTTATTAAGGTTTTAGGGAGACATCATGGAGAAGATGGATATATATATTAGTCATTTAGCTGTAGACGTTGGTTAGCTGCTTGACTGCAGAGCCATAGCTGCCAGAAGTCTGTTTTGTAATTTTCAATGAA
TGATGCCATTTTGCTATTTCTATAATAAAATCTGAGACGTGCGTACGCGTTTCTCCTTCCAATCATGTTAATTAGTTTGGTCAGGGTGAAATATTGAATTGCTACAAATATTGTGAAGTGGCT
>TRINITY_DN44068_c0_g1_i12 from sample A9 / Example unspliced isoform:GCTTTCGGAGCTCTCTACTGCCAAACAGAAGATGGCAAGTGCCGGGATGTCTTTCGTTTGCAAGTTATTCCTGCTTCTCATTGTTGGCTGCATTTCTGCTGCGAATCCGTCAGCTGCTTCATACTATCAATCCCCACCCCCAAAGCCTTACCCCTACAAATCTCCTCCTCCTCCATCTCACGTTCCTTCTCCAATCCATC
ATAAGCCGCCTCCTGCACCCACAGTCGTTCCAAAGCCACCAGTAGTGGAGAAACCTCCTCCTAAGGCGGTGCCAGTTTCTCCTCCATACAAGTACAAATCCCCACCTCCGCCAAAGCCAACTCCTGCACCATACGCTAAGCCTCCGCCAGTTGACAAGCCCCTTCCTCCTCCTTCACCACCAAAATCATGGCCAGCTCCT
CTTCCTCCCCATCACAAACCTTCTCCATTGGCCAAACCACCAAAAGCAACTCCATCCCCACCACAAAAACCAGAAAAACCATACGGGTACAAATCTCCTCCTCCCCCAACCCATGTTGTAAGTCCTACTCCCCCCAAAGCAGTACCTACTTTTCCCCCTTCCCATCCCAAACCACCCGTCTACCCGTCACCACCTATACA
CCACCACTCTTACAAGTCTCCTCCGCCGCCGCCATATTAGATTCTGCAAAGCAAATTACGGATGATAAGgtacgctgttattctttatatgtgttgtttgttctacgatatttcttatacaatgtatgtttttcatgccattttggagaaaatttatgtagtaagcattgactattagaatcctaaatcctgtatccagt
aatgtagaatttgtatagttttactcctgctactattgattgttattggcgttagagttatacatttattgatgtgtataggtcaatcgcattgcagttttttgccacatctcgagcttacaatattttcatgtttgcttgcagGTTATTAAGGTTTTAGGGAGACATCATGGAGAAGATGGATATATATATTAGTCATT
TAGCTGTAGACGTTGGTTAGCTGCTTGACTGCAGAGCCATAGCTGCCAGAAGTCTGTTTTGTAATTTTCAATGAATGATGCCATTTTGCTATTTCTATAATAAAATCTGAGACGTGCGTACGCGTTTCTCCTTCCAATCATGTTAATTAGTTTGGTCAGGGTGAAATATTGAATTGCTACAAATATTGTGAAGTGGCT
Intron 2 GTATGTTTTT ... TTGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 0 |
| A2 | -1 | 0 | 2 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 0 | 2 | 2 | 0 |
| A6 | 47.62 | 22 | 1 | 20 |
| A7 | 50 | 12 | 0 | 12 |
| A8 | 48.89 | 23 | 1 | 22 |
| A9 | 53.13 | 15 | 6 | 17 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN44068_c0_g1_i4 from sample A9 / Example spliced isoformCCAGAAAAACCATACGGGTACAAATCTCCTCCTCCCCCAACCCATGTTGTAAGTCCTACTCCCCCCAAAGCAGTACCTACTTTTCCCCCTTCCCATCCCAAACCACCCGTCTACCCGTCACCACCTATACACCACCACTCTTACAAGTCTCCTCCGCCGCCGCCATATTAGATTCTGCAAAGCAAATTGATAAGGTACGC
TGTTATTCTTTATATGTGTTGTTTGTTCTACGATATTTCTTATACAATGTTATTAAGGTTTTAGGGAGACATCATGGAGAAGATGGATATATATATTAGTCATTTAGCTGTAGACGTTGGTTAGCTGCTTGACTGCAGAGCCATAGCTGCCAGAAGTCTGTTTTGTAATTTTCAATGAATGATGCCATTTTGCTATTTCT
ATAATAAAATCTGAGACGTGCGTACGCGTTTCTCCTTCCAATCATGTTAATTAGTTTGGTCAGGGTGAAATATTGAATTGCTACAAATATTGTGAAGTGGCT
>TRINITY_DN44068_c0_g1_i12 from sample A9 / Example unspliced isoform:GCTTTCGGAGCTCTCTACTGCCAAACAGAAGATGGCAAGTGCCGGGATGTCTTTCGTTTGCAAGTTATTCCTGCTTCTCATTGTTGGCTGCATTTCTGCTGCGAATCCGTCAGCTGCTTCATACTATCAATCCCCACCCCCAAAGCCTTACCCCTACAAATCTCCTCCTCCTCCATCTCACGTTCCTTCTCCAATCCATC
ATAAGCCGCCTCCTGCACCCACAGTCGTTCCAAAGCCACCAGTAGTGGAGAAACCTCCTCCTAAGGCGGTGCCAGTTTCTCCTCCATACAAGTACAAATCCCCACCTCCGCCAAAGCCAACTCCTGCACCATACGCTAAGCCTCCGCCAGTTGACAAGCCCCTTCCTCCTCCTTCACCACCAAAATCATGGCCAGCTCCT
CTTCCTCCCCATCACAAACCTTCTCCATTGGCCAAACCACCAAAAGCAACTCCATCCCCACCACAAAAACCAGAAAAACCATACGGGTACAAATCTCCTCCTCCCCCAACCCATGTTGTAAGTCCTACTCCCCCCAAAGCAGTACCTACTTTTCCCCCTTCCCATCCCAAACCACCCGTCTACCCGTCACCACCTATACA
CCACCACTCTTACAAGTCTCCTCCGCCGCCGCCATATTAGATTCTGCAAAGCAAATTACGGATGATAAGGTACGCTGTTATTCTTTATATGTGTTGTTTGTTCTACGATATTTCTTATACAATgtatgtttttcatgccattttggagaaaatttatgtagtaagcattgactattagaatcctaaatcctgtatccagt
aatgtagaatttgtatagttttactcctgctactattgattgttattggcgttagagttatacatttattgatgtgtataggtcaatcgcattgcagttttttgccacatctcgagcttacaatattttcatgtttgcttgcagGTTATTAAGGTTTTAGGGAGACATCATGGAGAAGATGGATATATATATTAGTCATT
TAGCTGTAGACGTTGGTTAGCTGCTTGACTGCAGAGCCATAGCTGCCAGAAGTCTGTTTTGTAATTTTCAATGAATGATGCCATTTTGCTATTTCTATAATAAAATCTGAGACGTGCGTACGCGTTTCTCCTTCCAATCATGTTAATTAGTTTGGTCAGGGTGAAATATTGAATTGCTACAAATATTGTGAAGTGGCT