sp|Q9LDD1|BRG3_ARATH ----> Probable BOI-related E3 ubiquitin-protein ligase 3
Intron 1 GTGCTCTTAT ... GACCTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.92 | 16 | 109 | 58 |
| A2 | 76.74 | 15 | 66 | 33 |
| A3 | 80.21 | 19 | 88 | 66 |
| A4 | 85.45 | 8 | 62 | 32 |
| A5 | 86.67 | 4 | 22 | 30 |
| A6 | 74.42 | 11 | 39 | 25 |
| A7 | 89.15 | 14 | 151 | 79 |
| A8 | 89.9 | 5 | 59 | 30 |
| A9 | 87.99 | 17 | 162 | 87 |
| A10 | 83.71 | 25 | 165 | 92 |
>TRINITY_DN42770_c2_g5_i1 from sample A7 / Example spliced isoformGATTCCGCCAGTCTTTTTACAGTTTTTCTTTGAACAAGACCATGGCCGTTCAAGCACAATATCCTTCAAACGTCCTGCTGCCTGATTTCCGAAACAGGAGTGGGCAGGATCATCGGAATGTGATGCTAGTTGGTTTTGGATCAGATAATCAAATGCATTCTCAGCCCAATCAGCCTCCTCGCATCTTCAACACAGTGCCC
AATTCTGTGCATGGTCAGCAGAATGGAGCAATATTCCATTTGCCAGAGGAGCCTACATCACGAAAGAGACCAAGGGAAGCTGTGGATCTTATTGCTTTGCAACATCAAAGGCCCATGTTAATAAATTTGTGCGACCTTCATCAGCAAACCCCAGCCACAGGAACAGGAATTGTACCAAACTCAGTGGGGACCGTGTCGAC
CGGTCTGCGTTTGGCATTTGAGGATGAACAAATAAATTCTTCAAGATCATCTGTAACCAGAGGCGATGCAGCTTCTACCTTTCATTTTCTAACAGATGATATAACATCACAGTTGCAAAAACAGAAAGAAGAGATTGATCAATTTGTGAGGGCACAGGCAGATCAGTTGAGGCAATCTCTTGAAGAGAAGAGGCAGAGAC
ATTCACAATCTATCCTTTCTACGATTGAGGAAAGTGTCTTAAGGCAAATGAAGGAAAAAGACTTGGAAATGGAGAGGATCAATCTTAGAAACAGGGAACTAGAGGAGCAGGTGAAACAGCTGAAACTGGAAGCTTGCATATGGCAGAGCAAAGCCAAGCATCAGGAGGCCATGGTGAAATCCTTGAGAAAAAGCCTTCAA
CAGGCTGTGGTACAGGGCAGGGAACAAAGCAAGGAAGGATGTGGTGATAGTGAAGCAGATGATGCAGAATCAGCACACATAGATCCAAATGCAGAGGCCCATCGTGCAAGATCCTTGAGAGGTAGTAAGAACCCAAGGGACCAGAGAACTTGCAAGGTCTGTCAGAAGAACAGTGTTTCCATTCTCCTCCTCCCTTGTCG
ACACCTCTGCCTCTGCAGAGATTGTGATATTGCAGTGGATTCTTGCCCTCTGTGCTATTCTATGAAGAACGCAAGTGTGGAAGTCTACATGGCATAAACTATGCTGCAGATGTGGCGTTTGTTTGTGGAAGCTATGGATATCTGCATTACATAGCTTTGCTGTCCCTGAAGTGCTAAACGTTCTACTTATGCCTTTGGAA
AAATGCAGATTATTATTCATCCATTGCTTACTGACGTAGCTTCAGAACCTGAAGTAGCAGCAAGTCTACATTGGTTGTAAACTTCAGTTAAGAAGATGAAGCAGATGGCAAGGTGTTCCTGTAGGATGCCAGGATGCTGCAAGGGAAGAGAGCATTGCCATTCAGCAACAGCTCTTGAAGAGTATATGTATGCCTTTTTA
TCAGGGTAGCTTGTATCCACATTGATAGATAATCATATTTGGCAGCTGAAAGTAAAAAATCAGATACCATATAAACTCAGGAAAATAGAAGGGTGAAAAACAAAGGAGAAAGAGCTGCATTTCCCACCCTACTAATTCTTTCTTTATTTTTTGATTCTTTGGATGAAAAGATCATTGCTCTCATCTCCCAACTGCTTTTG
TGGTTCCTCAAGACCAATTGAAGGCATCCTTAGATGGTGAAGTATGAATAGGATATATGAGTGCATGGGCAGGTTTCTGCATGTAGAACTATGGCCCAGTCATTCCTAGTAACAGGCTCTAATCATTCTATAAAATGACTTGATTCTTTTGTCTAGTTTGTAAAAATTTTCTCTAATCATGTTCATTTGTATGTATTACA
TTTCTAATATGAATGCTTAATTTGGGTTGGATACAGATCTTCATTGATTGGCATTTGTGATATGATCTAATTGGTTGGATTCTGTATAAATGTTGAGAGTTAG
>TRINITY_DN42770_c2_g5_i2 from sample A7 / Example unspliced isoform:TCGGACATTACATGATTAAAGGGTTCCATGTGAAGATTAGGTGGAAGAGGACGATTTCCGTCCTGTGACGGGGAATGCGATGTGAGAGTAACGTGGGGGGCAGGCATAGGAATAGGAATAGGGATGGCGGGAGACGAGATGGGCATTGGGTAGGATTCTTCGCGGGGTGCGCTGCGCAGCGCCGCCCTCGTGCAGTGAAT
CAGGTGATGATGATGAGGATTGATGGTGGGTGGGTATGGGGATGGCCGGCCTGCCTGCCTGCCCGTTTCACGGCTTCTGACGCGCTGGGTTTGGGTTTTACCATCGCTGTCCGCTTCCGCCGGGCGTCAGCTGGGCGGTTAGCATTACAGCCAGACTCAGCCTCAGAATCAGCCTTCCACTTTGTATTTTTTGCATTGAA
GATTCACTCCAATCCTTCACTCATTCATTCCATTGGGGATTGGAGATGACCCCGCGTTAATGGGTAAAGATTCCGCCAGTCTTTTTACAGgtgctcttatcctgtgccactctgcccacccttctctttaagaaacttctcgtcttcttcttttcccacaccacgctcacatcggctttctatctattgcctgcttgacc
tcatagTTTTTCTTTGAACAAGACCATGGCCGTTCAAGCACAATATCCTTCAAACGTCCTGCTGCCTGATTTCCGAAACAGGAGTGGGCAGGATCATCGGAATGTGATGCTAGTTGGTTTTGGATCAGATAATCAAATGCATTCTCAGCCCAATCAGCCTCCTCGCATCTTCAACACAGTGCCCAATTCTGTGCATGGTC
AGCAGAATGGAGCAATATTCCATTTGCCAGAGGAGCCTACATCACGAAAGAGACCAAGGGAAGCTGTGGATCTTATTGCTTTGCAACATCAAAGGCCCATGTTAATAAATTTGTGCGACCTTCATCAGCAAACCCCAGCCACAGGAACAGGAATTGTACCAAACTCAGTGGGGACCGTGTCGACCGGTCTGCGTTTGGCA
TTTGAGGATGAACAAATAAATTCTTCAAGATCATCTGTAACCAGAGGCGATGCAGCTTCTACCTTTCATTTTCTAACAGATGATATAACATCACAGTTGCAAAAACAGAAAGAAGAGATTGATCAATTTGTGAGGGCACAGGCAGATCAGTTGAGGCAATCTCTTGAAGAGAAGAGGCAGAGACATTCACAATCTATCCT
TTCTACGATTGAGGAAAGTGTCTTAAGGCAAATGAAGGAAAAAGACTTGGAAATGGAGAGGATCAATCTTAGAAACAGGGAACTAGAGGAGCAGGTGAAACAGCTGAAACTGGAAGCTTGCATATGGCAGAGCAAAGCCAAGCATCAGGAGGCCATGGTGAAATCCTTGAGAAAAAGCCTTCAACAGGCTGTGGTACAGG
GCAGGGAACAAAGCAAGGAAGGATGTGGTGATAGTGAAGCAGATGATGCAGAATCAGCACACATAGATCCAAATGCAGAGGCCCATCGTGCAAGATCCTTGAGAGGTAGTAAGAACCCAAGGGACCAGAGAACTTGCAAGGTCTGTCAGAAGAACAGTGTTTCCATTCTCCTCCTCCCTTGTCGACACCTCTGCCTCTGC
AGAGATTGTGATATTGCAGTGGATTCTTGCCCTCTGTGCTATTCTATGAAGAACGCAAGTGTGGAAGTCTACATGGCATAAACTATGCTGCAGATGTGGCGTTTGTTTGTGGAAGCTATGGATATCTGCATTACATAGCTTTGCTGTCCCTGAAGTGCTAAACGTTCTACTTATGCCTTTGGAAAAATGCAGATTATTAT
TCATCCATTGCTTACTGACGTAGCTTCAGAACCTGAAGTAGCAGCAAGTCTACATTGGTTGTAAACTTCAGTTAAGAAGATGAAGCAGATGGCAAGGTGTTCCTGTAGGATGCCAGGATGCTGCAAGGGAAGAGAGCATTGCCATTCAGCAACAGCTCTTGAAGAGTATATGTATGCCTTTTTATCAGGGTAGCTTGTAT
CCACATTGATAGATAATCATATTTGGCAGCTGAAAGTAAAAAATCAGATACCATATAAACTCAGGAAAATAGAAGGGTGAAAAACAAAGGAGAAAGAGCTGCATTTCCCACCCTACTAATTCTTTCTTTATTTTTTGATTCTTTGGATGAAAAGATCATTGCTCTCATCTCCCAACTGCTTTTGTGGTTCCTCAAGACCA
ATTGAAGGCATCCTTAGATGGTGAAGTATGAATAGGATATATGAGTGCATGGGCAGGTTTCTGCATGTAGAACTATGGCCCAGTCATTCCTAGTAACAGGCTCTAATCATTCTATAAAATGACTTGATTCTTTTGTCTAGTTTGTAAAAATTTTCTCTAATCATGTTCATTTGTATGTATTACATTTCTAATATGAATGC
TTAATTTGGGTTGGATACAGATCTTCATTGATTGGCATTTGTGATATGATCTAATTGGTTGGATTCTGTATAAATGTTGAGAGTTAG
Intron 2 GTGCACATAT ... TGATTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.83 | 89 | 1 | 31 |
| A2 | 27.72 | 73 | 0 | 28 |
| A3 | 23.53 | 104 | 0 | 32 |
| A4 | 28.36 | 48 | 1 | 19 |
| A5 | 20.41 | 39 | 0 | 10 |
| A6 | 19.78 | 73 | 0 | 18 |
| A7 | 21.29 | 244 | 0 | 66 |
| A8 | 24.04 | 158 | 0 | 50 |
| A9 | 23 | 298 | 0 | 89 |
| A10 | 22.67 | 249 | 0 | 73 |
>TRINITY_DN42598_c0_g2_i1 from sample A9 / Example spliced isoformGATAAATGGGAAGTTTGACTAAATGTATCATCGAATTCAGACAAGTCGGACATTACATGATTAAAGGGTTCCATGTGAAGATTAGGTGGAAGAGGACGATTTCCGTCCTGTGACGGGGAATGCGATGTGAGAGTAACGTGGGGGGCAGGCATAGGAATAGGAATAGGGATGGCGGGAGACGAGATGGGCATTGGGTAGGA
TTCTTCGCGGGGTGCGCTGCGCAGCGCCGCCCTCGTGCAGTGAATCAGGTGATGATGATGAGGATTGATGGTGGGTGGGTATGGGGATGGCCGGCCTGCCTGCCTGCCCGTTTCACGGCTTCTGACGCGCTGGGTTTGGGTTTTACCATCGCTGTCCGCTTCCGCCGGGCGTCAGCTGGGCGGTTAGCATTACAGCCAGA
CTCAGCCTCAGAATCAGCCTTCCACTTTGTATTTTTTGCATTGAAGATTCACTCCAATCCTTCACTCTTTCATTCCATTGGGGATTGGAGATGACCCCGCGTTAATGGGTAAAGATTCCGCCAGTCTTTTTACAGGTGCTCTTATCCTGTGCCACTCTGCCCACCCTTCTCTTTAAGAAACTTCTCGTCTTCTTCTTTTC
CCACACCACGCTCACATCGGCTTTCTATCTATTGCCTGCTTGACCTCATAGTTTTTCTTTGAACAAGACCATGGCCGTTCAAGCACAATATCCTTCAAACGTCCTGCTGCCTGATTTCCGAAACAGGAGTGGGCAGGATCATCGGAATGTGATGCTAGTTGGTTTTGGATCAGATAATCAAATGCATTCTCAGCCCAATC
AGCCTCCTCGCATCTTCAACACAGTGCCCAATTCTGTGCATGGTCAGCAGAATGGAGCAATATTCCATTTGCCAGAGGAGCCTACATCACGAAAGAGACCAAGGGAAGCTGTGGATCTTATTGCTTTGCAACATCAAAGGCCCATGTTAATAAATTTGTGCGACCTTCATCAGCAAACCCCAGCCACAGGAACAGGAATT
GTACCAAACTCAGTGGGGACCGTGTCGACCGGTCTGCGTTTGGCATTTGAGGATGAACAAATAAATTCTTCAAGATCATCTGTAACCAGAGGCGATGCAGCTTCTACCTTTCATTTTCTAACAGATGATATAACATCACAGTTGCAAAAACAGAAAGAAGAGATTGATCAATTTGTGAGGGCACAGGCAGATCAGTTGAG
GCAATCTCTTGAAGAGAAGAGGCAGAGACATTCACAATCTATCCTTTCTACGATTGAGGAAAGTGTCTTAAGGCAAATGAAGGAAAAAGACTTGGAAATGGAGAGGATCAATCTTAGAAACAGGGAACTAGAGGAGCAGGTGAAACAGCTGAAACTGGAAGCTTGCATATGGCAGAGCAAAGCCAAGCATCAGGAGGCCA
TGGTGAAATCCTTGAGAAAAAGCCTTCAACAGGCTGTGGTACAGGGCAGGGAACAAAGCAAGGAAGGATGTGGTGATAGTGAAGCAGATGATGCAGAATCAGCACACATAGATCCAAATGCAGAGGCCCATCGTGCAAGATCCTTGAGAGGTAGTAAGAACCCAAGGGATCAGAGAACTTGCAAGGTCTGTCAGAAGAAC
AGTGTTTCCATTCTCCTCCTCCCTTGTCGACACCTCTGCCTCTGCAGAGATTGTGATATTGCAGTGGATTCTTGCCCTCTGTGCTATTCTATGAAGAACGCAAGTGTGGAAGTCTACATGGCATAAACTATGCTGCAGATGTGGCGTTTGTTTGTGGAAGCTATGGATATCTGCATTACATAGCTTTGCTGTCCCTGAAG
TGCTAAACGTTCTACTTATGCCTTTGGAAAAATGCAGATTATTATTCATCCATTGCTTACTGACGTAGCTTCAGAACCTGAAGTAGCAGCAAGTCTACATTGGTTGTAAACTTCAGTTAAGAAGATGAAGCAGATGGCAAGGTGTTCCTGTAGGATGCCAGGATGCTGCAAGGGAAGAGAGCATTGCCATTCAGCAACAG
CTCTTGAAGAGTATATGTATGCCTTTTTATCAGGGTAGCTTGTATCCACATTGATAGATAATCATATTTGGCAGCTGAAAGTAAAAAATCAGATACCATATAAACTCAGGAAAATAGAAGGGTGAAAAACAAAGGAGAAAGAGCTGCATTTCCCACCCTACTAATTCTTTCTTTATTTTTTGATTCTTTGGATGAAAAGA
TCATTGCTCTCATCTCCCAACTGCTTTTGTGGTTCCTCAAGACCAATTGAAGGCATCCTTAGATGGTGAAGTATGAATAGGATATATGAGTGCATGGGCAGGTTTCTGCATGTAGAACTATGGCCCAGTCATTCCTAGTAACAGGCTCTAATCATTCTATAAAATGACTTGATTCTTTTGTCTAGTTTGTAAAAATTTTC
TCTAATCATGTTCATTTGTATGTATTACATTTCTAATATGAATGCTTAATTTGGGTTGGATACAGATCTTCATTGA
>TRINITY_DN42598_c0_g2_i2 from sample A9 / Example unspliced isoform:TGATCAATTTGTGAGGGCACAGgtgcacatattattcattttccatgattctggatttgtagtaataaaacggttcatcactttcaactctaggagatgcctataaaactgcaaaaatattttttcttgcaacatagacttcataaacacagttcaaaactgtaggacttgtttgttcaatccctgtgagccttactaaa
tttttttgcatgtattgatttatagGCAGATCAGTTGAGGCAATCTCTTGAAGAGAAGAGGCAGAGACATTCACAATCTATCCTTTCTACGATTGAGGAAAGTGTCTTAAGGCAAATGAAGGAAAAAGACTTGGAAATGGAGAGGATCAATCTTAGAAACAGGGAACTAGAGGAGCAGGTGAAACAGCTGAAACTGGAAG
CTTGCATATGGCAGAGCAAAGCCAAGCATCAGGAGGCCATGGTGAAATCCTTGAGAAAAAGCCTTCAACAGGCTGTGGTACAGGGCAGGGAACAAAGCAAGGAAGGATGTGGTGATAGTGAAGCAGATGATGCAGAATCAGCACACATAGATCCAAATGCAGAGGCCCATCGTGCAAGATCCTTGAGAGGTAGTAAGAAC
CCAAGGGATCAGAGAACTTGCAAGGTCTGTCAGAAGAACAGTGTTTCCATTCTCCTCCTCCCTTGTCGACACCTCTGCCTCTGCAGAGATTGTGATATTGCAGTGGATTCTTGCCCTCTGTGCTATTCTATGAAGAACGCAAGTGTGGAAGTCTACATGGCATAAACTATGCTGCAGATGTGGCGTTTGTTTGTGGAAGC
TATGGATATCTGCATTACATAGCTTTGCTGTCCCTGAAGTGCTAAACGTTCTACTTATGCCTTTGGAAAAATGCAGATTATTATTCATCCATTGCTTACTGACGTAGCTTCAGAACCTGAAGTAGCAGCAAGTCTACATTGGTTGTAAACTTCAGTTAAGAAGATGAAGCAGATGGCAAGGTGTTCCTGTAGGATGCCAG
GATGCTGCAAGGGAAGAGAGCATTGCCATTCAGCAACAGCTCTTGAAGAGTATATGTATGCCTTTTTATCAGGGTAGCTTGTATCCACATTGATAGATAATCATATTTGGCAGCTGAAAGTAAAAAATCAGATACCATATAAACTCAGGAAAATAGAAGGGTGAAAAACAAAGGAGAAAGAGCTGCATTTCCCACCCTAC
TAATTCTTTCTTTATTTTTTGATTCTTTGGATGAAAAGATCATTGCTCTCATCTCCCAACTGCTTTTGTGGTTCCTCAAGACCAATTGAAGGCATCCTTAGATGGTGAAGTATGAATAGGATATATGAGTGCATGGGCAGGTTTCTGCATGTAGAACTATGGCCCAGTCATTCCTAGTAACAGGCTCTAATCATTCTATA
AAATGACTTGATTCTTTTGTCTAGTTTGTAAAAATTTTCTCTAATCATGTTCATTTGTATGTATTACATTTCTAATATGAATGCTTAATTTGGGTTGGATACAGATCTTCATTGA