NA ----> NA

Intron 1 GTAAAACTTG ... TTTCTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	8.33	55	5	5
A2	1.19	83	0	2
A3	1.79	55	0	2
A4	2.1	70	0	3
A5	0.69	72	0	1
A6	0	15	0	0
A7	0	7	0	0
A8	30	7	2	4
A9	0	14	0	0
A10	0	1	0	0

>TRINITY_DN104951_c0_g1_i3 from sample A3 / Example spliced isoform

GTTGTCGGCGAGCTCTGTATGAAGAGGCTCTGCGTCGAAAATGGTGTCCTGCAAAACTTGGGGAAACTATGTTGTAAATGATGATAGCGTTTCGTTGTTGGTTGTTGGTTGTTTCTCGAGGTAAAAAAAAAGAAGGAAAGTTGGAAGCTGCCAGCATATCTCTTCCAGGTTGCTGCGACTGGAGCACACTCTTATGGATG
CCTCGAGCCGCCATTATCAAGGTGGCTTGGAGTGATAAGGGCGCCAGGAGGAGCCGACCCCTGGCCATAATCGCCCACTGAACAGTGGAGGGCGCTGGCGAGGTTGGCGACAGGGTCACCTCCTCCGAGGCCCGCGTCTTAAGACGCCAAGGTAACCTTCGACAGGTTTGAAGTGCGAAGAAGGAATTCGGTACTAGCTT
TCATAAGATAAGTTAAC

>TRINITY_DN104951_c0_g1_i2 from sample A3 / Example unspliced isoform:

CCTCGAGCCGCCATTATCAAGgtaaaacttgaactctcgtcagcaatttttatagcaagctctttcttctcattcattcggagtttaatgcatacgtttttcttgcagGTGGCTTGGAGTGATAAGGGCGCCAGGAGGAGCCGACCCCTGGCCATAATCGCCCACTGAACAGGTAAGGTATTCCAATCCTGTCGACTTCA
TTCCTAGTTAATAGTTTGTTAAAGTTTTGACTTCGGTTGTTTTTGGCAGGTGGAGGGCGCTGGCGAGGTTGGCGACAGGGTCACCTCCTCCGAGGCCCGCGTCTTAAGACGCCAAGGTAAAGAGTTGAGCCTGCTAGCTATTATTTAAAGTTTTTTTAAAAGGAAA

Intron 2 GTAAGGTATT ... TTTTTGGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	0	37	0	0
A2	0	61	0	0
A3	2.56	38	1	1
A4	12	44	7	5
A5	9.73	51	6	5
A6	0	10	0	0
A7	0	6	0	0
A8	0	4	0	0
A9	0	8	0	0
A10	0	1	0	0

>TRINITY_DN100895_c4_g7_i2 from sample A4 / Example spliced isoform

TGAAGAGTCTCTGCGTCGAAAATGGTGTCCTGCAAAACTTGGGGAAACTATGTTGTAAATGATGATAGCGTTTCGTTGTTGGTTGTTGGTTGTTTCTCGAGGTAAAAAAAAAAAAGGAAAGTTGGAAGCTGCCACCATATCTCTTCCAGGTTGCTGCGACTGGAGCACACTGTATGGTTGCCTCGAGCCGCCATTATCAA
GGTGGCTTGGAGTGATAAGGGCGCCAGGAGGAGCCGACCCCTGGCCATAATCGCCCACTGAACAGGTGGAGGGCGCTGGCTAGGTTGGCGACAGGGTTACCTCCTCCGAGGCCCGCGTCTTAAGACGCCAAGGTAACCTTCGACAGGTTTGAATTGCGCGAAGAAGGGATTTGGTACCCGC

>TRINITY_DN100895_c4_g7_i1 from sample A4 / Example unspliced isoform:

CTTATGGATGCCTCGAGCCGCCATTATCAAGGTGGCTTGGAGTGATAAGGGCGCCAGGAGGAGCCGACCCCTGGCCATAATCGCCCACTGAACAGgtaaggtattccaatcctgtcgacttcattcctagttaatagtttgttaaagttttgacttcggttgtttttggcagGTGGAGGGCGCTGGCTAGGTTGGCGACA
GGGTTACCTCCTCCGAGGCCCGCGTCTTAAGACGCCAAGGTAACCTTCGACAGGTTTGAATTGCGCGAAGAAGGGATTTGGTACCCGC