sp|O81062|SIP_ARATH ----> Signal peptide peptidase
Intron 1 GTGAGGAGAG ... TATGTTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 6 | 2 |
| A2 | 38.46 | 4 | 1 | 4 |
| A3 | 60 | 3 | 5 | 4 |
| A4 | 42.86 | 2 | 1 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 33.33 | 3 | 1 | 2 |
| A8 | 40 | 3 | 1 | 3 |
| A9 | 100 | 0 | 1 | 4 |
| A10 | 69.23 | 2 | 5 | 4 |
>TRINITY_DN37449_c0_g2_i4 from sample A9 / Example spliced isoformCTGATGGGAAATGATCTGCTTCTCACTACTGTGTTCCAAAATGGGAAGATTGTTGCTTCCTTTCTCAGTCAATTTAAATTCCCATTAAGGTTGCTTCATTTGTTACACTTCCAATTGAGGTAATCATATTTTTTTGATGAGCAAGTAATCCCAATACACAGACTTGGGATGATGCTGTTATCATAATTATTGTGTTAAAA
TGGTCTATAAAACGTGCCAGTATGTGTACCTTGATTCTTTGTTGCAATATGCTGTTATTGCCTGTACGCATGTTTTTCAATGTTTTCATTAAGATTAAAAAATGATATTTTCTTTGGATTACATTTCTATGCAGGCATTTTTGTGGCTTTAGCTTTACGATTTGACGTCTCAAGAGAAAAAGGAGAACGATACTTTAGGA
GTGCATTCATTGGCTACTCAGTAGGCATAATTGTCACAATCATTGTGATGAATTGGTTTCTGGCAACACAAGGACATGACAATGAGAAATTGAAAGAGGAAATGGCTTCTATATTGGTAGTAGAAGCAATGAAGAAACTAGAAGGTATGGACTTGTCCATGCTTGCCAAATATGTGGAATAACGATCTACTAAAGGTACT
GAAACAGTCCAACCAAAGCAACCCTGTCAAAGGGAATCAATTGATTCCCTGTCAACTTCTAGATCGTCCAAAAGGTCAAGGATAAAATAAATCAAAATAACCTCTAAGAATGTGGAACAGGGAGCAGAGACATCCAGTGTCCCAGCCACTCCTGGGACATATATTTCTTCCCACCAGTACATGTTATGCATCTTGCATTG
GTACATACGAAACTGAGGTAGAATATGATGTTGCCTCCTGGAATATCAAAATGATAGATGCCAGGAAAGTGTTCATGCTTAGGTTGAAGAAATCATGCCTTCAACACTTCAAAGAGTATCTACATATTCCATTCTTGAAGATACCAATGCAGCTTCAAAATGCAGTCATCCATGACATGGAGACTAAATTTGGGACAGGT
TGGTCAGTAAAGCAGATAAAAAAACAAATGACTCAAAATTTCAAGATATTTTGTTGCAACCAAACGAAAAATATAAAAGAAATTCCTCACGAGTTAAGGAACAAAAGAAGGCCAACTGATGTAAGTGTGAAAGTTTGGAAAGAGCTCGTGAAAGCATATGACAGAGCGGATGCATAGAGGAAGTCTGGACAAGGCCTCGA
AGGCCAGGCTTTCCAAATTTCGTGCCACACATCACAGTGACCAAACAAGTTTTGAAGCCTTAATATGCAAGTTTTAGCAACAATATGGCCATTATCCATCACAATTTGAATTTGAGATGATACAAGACAAAAATTGGTCTGATTTTGTTGTCTTGAGGGAGAATAAGGATCTTCTGAAAGATCCGGATGATCCTTATCAA
ATAGATCCAGATCACATTGGGTCCAATGCTGAGATGGCAGATAATGCTCATGATGACACATATACGGGCAGCCAGTGACATTCATGATCATATAGACTGCATCATGGATCATTTTTTATATATTGTTATAATGCCTCTTTTCATGGTTACTATCATCTGTATCATTTTCAAGGCCTCCAGGACCATATTATTGAGTTGTA
TCATTTTGACATGTATCATTTGACTTATATCATTTGGACATGACGTATACTATTGATTTGTATCATTTTGTC
>TRINITY_DN37449_c0_g2_i1 from sample A9 / Example unspliced isoform:CTGATGGGAAATGATCTGCTTCTCACTACTGTGTTCCAAAATGGGAAGATTGTTGCTTCCTTTCTCAGTCAATTTAAATTCCCATTAAGGTTGCTTCATTTGTTACACTTCCAATTGAGGTAATCATATTTTTTTGATGAGCAAGTAATCCCAATACACAGACTTGGGATGATGCTGTTATCATAATTATTGTGTTAAAA
TGGTCTATAAAACGTGCCAGTATGTGTACCTTGATTCTTTGTTGCAATATGCTGTTATTGCCTGTACGCATGTTTTTCAATGTTTTCATTAAGATTAAAAAATGATATTTTCTTTGGATTACATTTCTATGCAGGCATTTTTGTGGCTTTAGCTTTACGATTTGACGTCTCAAGAGAAAAAGGAGAACGATACTTTAGGA
GTGCATTCATTGGCTACTCAGTAGGCATAATTGTCACAATCATTGTGATGAATTGGTTTCTGGCAACACAAGGACATGACAATGAGAAATTGAAAGAGGAAATGGCTTCTATATTGGTAGTAGAAGCAATGAAGAAACTAGAAGGTATGGACTTGTCCATGCTTGCCAAATATGTGGAATAACGATCTACTAAAGGTACT
GAAACAGTCCAACCAAAGCAACCCTGTCAAAGGGAATCAATTGATTCCCTGTCAACTTCTAGATCGTCCAAAAGGTCAAGGATAAAATAAATCAAAATAACCTCTAAGAATGTGGAACAGGGAGCAGAGACATCCAGTGTCCCAGCCACTCCTGGGACATATATTTCTTCCCACCAGTACATGTTATGCATCTTGCATTG
GTACATACGAAACTGAGGTAGAATATGATGTTGCCTCCTGGAATATCAAAATGATAGATGCCAGGAAAGTGTTCATGCTTAGGTTGAAGAAATCATGCCTTCAACACTTCAAAGAGTATCTACATATTCCATTCTTGAAGATACCAATGCAGCTTCAAAATGCAGTCATCCATGACATGGAGACTAAATTTGGGACAGGT
TGGTCAGTAAAGCAGATAAAAAAACAAATGACTCAAAATTTCAAGATATTTTGTTGCAACCAAACGAAAAATATAAAAGAAATTCCTCACGAGTTAAGGAACAAAAGAAGGCCAACTGATGTAAGTGTGAAAGTTTGGAAAGAGCTCGTGAAAGCATATGACAGAGCGGATGCATAGAGGAAGTCTGgtgaggagagcac
ataggtatttgaatttggtcataagattatttcaaattcattaaatgatttttatattttattggtgcataatcaaattgaattagtgtatgtttcagGACAAGGCCTCGAAGGCCAGGCTTTCCAAATTTCGTGCCACACATCACAGTGACCAAACAAGTTTTGAAGCCTTAATATGCAAGTTTTAGCAACAATATGGC
CATTATCCATCACAATTTGAATTTGAGATGATACAAGACAAAAATTGGTCTGATTTTGTTGTCTTGAGGGAGAATAAGGATCTTCTGAAAGATCCGGATGATCCTTATCAAATAGATCCAGATCACATTGGGTCCAATGCTGAGATGGCAGATAATGCTCATGATGACACATATACGGGCAGCCAGTGACATTCATGATC
ATATAGACTGCATCATGGATCATTTTTTATATATTGTTATAATGCCTCTTTTCATGGTTACTATCATCTGTATCATTTTCAAGGCCTCCAGGACCATATTATTGAGTTGTATCATTTTGACATGTATCATTTGACTTATATCATTTGGACATGACGTATACTATTGATTTGTATCATTTTGTC
Intron 2 GTATTTGAAT ... TATGTTTCAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 5 | 2 |
| A2 | 38.46 | 4 | 1 | 4 |
| A3 | 66.67 | 2 | 4 | 4 |
| A4 | 42.86 | 2 | 1 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 0 | 2 | 0 | 0 |
| A7 | 45.45 | 3 | 3 | 2 |
| A8 | 42.86 | 2 | 0 | 3 |
| A9 | 100 | 0 | 2 | 4 |
| A10 | 83.33 | 1 | 6 | 4 |
>TRINITY_DN34303_c0_g1_i3 from sample A7 / Example spliced isoformTTTAGGAGTGCATTCATTGGCTACTCAGTAGGCATAATTGTCACAATCATTGTGATGAATTGGTTTCTGGCAACACAAGGACATGACAATGAGAAATTGAAAGAGGAAATGGCTTCTATATTGGTAGTAGAAGCAATGAAGAAACTAGAAGGTATGGACTTGTCCATGCTTGCCAAATATGTGGAATAACGATCTACTAA
AGGTACTGAAACAGTCCAACCAAAGCAACCCTGTCAAAGGGAATCAATTGATTCCCTGTCAACTTCTAGATCGTCCAAAAGGTCAAGGATAAAATAAATCAAAATAACCTCTAAGAATGTGGAACAGGGAGCAGAGACATCCAGTGTCCCAGCCACTCCTGGGACATATATTTCTTCCCACCAGTACATGTTATGCATCT
TGCATTGGTACATACGAAACTGAGGTAGAATATGATGTTGCCTCCTGGAATATCAAAATGATAGATGCCAGGAAAGTGTTCATGCTTAGGTTGAAGAAATCATGCCTTCAACACTTCAAAGAGTATCTACATATTCCATTCTTGAAGATACCAATGCAGCTTCAAAATGCAGTCATCCATGACATGGAGACTAAATTTGG
GACAGGTTGGTCAGTAAAGCAGATAAAAAAACAAATGACTCAAAATTTCAAGATATTTTGTTGCAACCAAACGAAAAATATAAAAGAAATTCCTCACGAGTTAAGGAACAAAAGAAGGCCAACTGATGTAAGTGTGAAAGTTTGGAAAGAGCTCGTGAAAGCATATGACAGAGCGGATGCATAGAGGAAGTCTGGTGAGG
AGAGCACATAGGACAAGGCCTCGAAGGCCAGGCTTTCCAAATTTCGTGCCACACATCACAGTGACCAAACAAGTTTTGAAGCCTTAATATGCAAGTTTTAGCAACAATATGGCCATTATCCATCACAATTTGAATTTGAGATGATACAAGACAAAAATTGGTCTGATTTTGTTGTCTTGAGGGAGAATAAGGATCTTCTG
AAAGATCCGGATGATCCTTATCAAATAGATCCAGATCACATTGGGTCCAATGCTGAGATGGCAGATAATGCTCATGATGACACATATACGGGCAGCCAGTGACATTCATGATCATATAGACTGCATCATGGATCATTTTTTATATATTGTTATAATGCCTCTTTTCATGGTTACTATCATCTGTATCATTTTCAAGGCCT
CCAGGACCATATTATTGAGTTGTATCATTTTGACATGTATCATTTGACTTATATCATTTGGACATGACGTATACTATTGATTTGTATCATTTTGTC
>TRINITY_DN34303_c0_g1_i1 from sample A7 / Example unspliced isoform:TTTAGGAGTGCATTCATTGGCTACTCAGTAGGCATAATTGTCACAATCATTGTGATGAATTGGTTTCTGGCAACACAAGGACATGACAATGAGAAATTGAAAGAGGAAATGGCTTCTATATTGGTAGTAGAAGCAATGAAGAAACTAGAAGGTATGGACTTGTCCATGCTTGCCAAATATGTGGAATAACGATCTACTAA
AGGTACTGAAACAGTCCAACCAAAGCAACCCTGTCAAAGGGAATCAATTGATTCCCTGTCAACTTCTAGATCGTCCAAAAGGTCAAGGATAAAATAAATCAAAATAACCTCTAAGAATGTGGAACAGGGAGCAGAGACATCCAGTGTCCCAGCCACTCCTGGGACATATATTTCTTCCCACCAGTACATGTTATGCATCT
TGCATTGGTACATACGAAACTGAGGTAGAATATGATGTTGCCTCCTGGAATATCAAAATGATAGATGCCAGGAAAGTGTTCATGCTTAGGTTGAAGAAATCATGCCTTCAACACTTCAAAGAGTATCTACATATTCCATTCTTGAAGATACCAATGCAGCTTCAAAATGCAGTCATCCATGACATGGAGACTAAATTTGG
GACAGGTTGGTCAGTAAAGCAGATAAAAAAACAAATGACTCAAAATTTCAAGATATTTTGTTGCAACCAAACGAAAAATATAAAAGAAATTCCTCACGAGTTAAGGAACAAAAGAAGGCCAACTGATGTAAGTGTGAAAGTTTGGAAAGAGCTCGTGAAAGCATATGACAGAGCGGATGCATAGAGGAAGTCTGGTGAGG
AGAGCACATAGgtatttgaatttggtcataagattatttcaaattcattaaatgatttttatattttattggtgcataatcaaattgaattagtgtatgtttcagGACAAGGCCTCGAAGGCCAGGCTTTCCAAATTTCGTGCCACACATCACAGTGACCAAACAAGTTTTGAAGCCTTAATATGCAAGTTTTAGCAACA
ATATGGCCATTATCCATCACAATTTGAATTTGAGATGATACAAGACAAAAATTGGTCTGATTTTGTTGTCTTGAGGGAGAATAAGGATCTTCTGAAAGATCCGGATGATCCTTATCAAATAGATCCAGATCACATTGGGTCCAATGCTGAGATGGCAGATAATGCTCATGATGACACATATACGGGCAGCCAGTGACATT
CATGATCATATAGACTGCATCATGGATCATTTTTTATATATTGTTATAATGCCTCTTTTCATGGTTACTATCATCTGTATCATTTTCAAGGCCTCCAGGACCATATTATTGAGTTGTATCATTTTGACATGTATCATTTGACTTATATCATTTGGACATGACGTATACTATTGATTTGTATCATTTTGTC