NA ----> NA
Intron 1 GTATCTGAGA ... CTTTTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 1 | 3 | 4 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 2 | 3 |
| A4 | 40 | 3 | 2 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 79.63 | 33 | 160 | 98 |
| A7 | 83.88 | 16.5 | 108 | 63 |
| A8 | 86.03 | 13 | 104 | 56 |
| A9 | 85.37 | 9 | 72 | 33 |
| A10 | 95.79 | 2 | 60 | 31 |
>TRINITY_DN35145_c0_g2_i1 from sample A6 / Example spliced isoformTAGTTGGTTTGAAGGGAAGTTGGAGGCGCAAATCTACAATATAGCCTTCGAAGTTCCAACTACCAGTTTCCTTACTGAACAAAAATTCCAATGCTTTGCCGTGTGGGCTGGGAATTATTCGTCACGCTCCTCGTTCTCCGCAAAATCATTCCCTTCCGGAAATTTCCTTTCCTTGGCTCCTCGGTTTGATTGATATAAAT
ACCCATTAAGGTGAGATCCAGTTGATGTATATCTCCCAACAATTTATACCCTCACAAACATACATCTAGATCAGGCTCGTCATCATGTTTCCCCGGCCCGGTTTCGATCCCTACGGACCTCCTCCTCCACCATCGCCAGGCCCTCCCTTTGATCCATACGCTCCTCCTCCACCAGGGCCACCAGGGCCTCAATTCGATCC
ATTCGCACCTCCGCCACCGCGAGGGCCTCCATTTGATCCATTCGCTCCTCCGCCAGGGCCTCCATTTGATCCATACGCTCCTCCGCCAGGGCCTCCACCGCCAGGCCCTCCATTCGCTCCTCCGCCAGGTCCTATGGGTTACCCACCGCCACCTGGTCCTATGTTCGGTGGCCCTCCCCCTCCTGGCCCTGGTCCTTACG
GTCCTCCATTTCCTTGAAGAGTCCGGGGATTATCAGCACAGCTACAGCTCTGTGAGGGATATATCTTAGGTTATGTATTAGTCTGCTTAATTCAGGGTTTGCAGTTTCCAAGTTACAGCTCCTCTTCTCCTTCTCGATTATTGTTAAATGCAGACTGTCTCAAATTTATACCTAATTTTGATTATTTCTTGAAATCAAGG
GTTTGCAGTTTCCAAGTTACAGCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGT
>TRINITY_DN35145_c0_g2_i3 from sample A6 / Example unspliced isoform:TAGTTGGTTTGAAGGGAAGTTGGAGGCGCAAATCTACAATATAGCCTTCGAAGTTCCAACTACCAGTTTCCTTACTGAACAAAAATTCCAATGCTTTGCCGTGTGGGCTGGGAATTATTCGTCACGCTCCTCGTTCTCCGCAAAATCATTCCCTTCCGGAAATTTCCTTTCCTTGGCTCCTCGGTTTGATTGATATAAAT
ACCCATTAAGGTGAGATCCAGTTGATGTATATCTCCCAACAATTTATACCCTCACAAACATACATCTAGATCAGGCTCGTCATCATGTTTCCCCGGCCCGGTTTCGATCCCTACGGACCTCCTCCTCCACCATCGCCAGGCCCTCCCTTTGATCCATACGCTCCTCCTCCACCAGGGCCACCAGGGCCTCAATTCGATCC
ATTCGCACCTCCGCCACCGCGAGGGCCTCCATTTGATCCATTCGCTCCTCCGCCAGGGCCTCCATTTGATCCATACGCTCCTCCGCCAGGGCCTCCACCGCCAGGCCCTCCATTCGCTCCTCCGCCAGGTCCTATGGGTTACCCACCGCCACCTGGTCCTATGTTCGGTGGCCCTCCCCCTCCTGGCCCTGGTCCTTACG
GTCCTCCATTTCCTTGAAGAGTCCGGGGATTATCAGCACAGCTACAGCTCTGTGAGGGATATATCTTAGGTTATGTATTAGTCTGCTTAATTCAGgtatctgagatacctcatgtattatcttgattactgcaaatgtatgtaaaacgtttatgcgtttagagctctacttttttaagGGTTTGCAGTTTCCAAGTTACA
GCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGTCTCAAATTTATACCTAATTTTGATTATTTCTTGAAATCAAGGGTTTGCAGTTTCCAAGTTACAGCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGT
Intron 2 GTATCTGAGA ... CTTTTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 1 | 3 | 4 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 100 | 0 | 2 | 3 |
| A4 | 40 | 3 | 2 | 2 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 80.47 | 33 | 180 | 92 |
| A7 | 84.25 | 16.5 | 114 | 62 |
| A8 | 86.11 | 13 | 106 | 55 |
| A9 | 85.83 | 9 | 74 | 35 |
| A10 | 95.65 | 2 | 62 | 26 |
>TRINITY_DN35145_c0_g2_i1 from sample A6 / Example spliced isoformTAGTTGGTTTGAAGGGAAGTTGGAGGCGCAAATCTACAATATAGCCTTCGAAGTTCCAACTACCAGTTTCCTTACTGAACAAAAATTCCAATGCTTTGCCGTGTGGGCTGGGAATTATTCGTCACGCTCCTCGTTCTCCGCAAAATCATTCCCTTCCGGAAATTTCCTTTCCTTGGCTCCTCGGTTTGATTGATATAAAT
ACCCATTAAGGTGAGATCCAGTTGATGTATATCTCCCAACAATTTATACCCTCACAAACATACATCTAGATCAGGCTCGTCATCATGTTTCCCCGGCCCGGTTTCGATCCCTACGGACCTCCTCCTCCACCATCGCCAGGCCCTCCCTTTGATCCATACGCTCCTCCTCCACCAGGGCCACCAGGGCCTCAATTCGATCC
ATTCGCACCTCCGCCACCGCGAGGGCCTCCATTTGATCCATTCGCTCCTCCGCCAGGGCCTCCATTTGATCCATACGCTCCTCCGCCAGGGCCTCCACCGCCAGGCCCTCCATTCGCTCCTCCGCCAGGTCCTATGGGTTACCCACCGCCACCTGGTCCTATGTTCGGTGGCCCTCCCCCTCCTGGCCCTGGTCCTTACG
GTCCTCCATTTCCTTGAAGAGTCCGGGGATTATCAGCACAGCTACAGCTCTGTGAGGGATATATCTTAGGTTATGTATTAGTCTGCTTAATTCAGGGTTTGCAGTTTCCAAGTTACAGCTCCTCTTCTCCTTCTCGATTATTGTTAAATGCAGACTGTCTCAAATTTATACCTAATTTTGATTATTTCTTGAAATCAAGG
GTTTGCAGTTTCCAAGTTACAGCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGT
>TRINITY_DN35145_c0_g2_i2 from sample A6 / Example unspliced isoform:TAGTTGGTTTGAAGGGAAGTTGGAGGCGCAAATCTACAATATAGCCTTCGAAGTTCCAACTACCAGTTTCCTTACTGAACAAAAATTCCAATGCTTTGCCGTGTGGGCTGGGAATTATTCGTCACGCTCCTCGTTCTCCGCAAAATCATTCCCTTCCGGAAATTTCCTTTCCTTGGCTCCTCGGTTTGATTGATATAAAT
ACCCATTAAGGTGAGATCCAGTTGATGTATATCTCCCAACAATTTATACCCTCACAAACATACATCTAGATCAGGCTCGTCATCATGTTTCCCCGGCCCGGTTTCGATCCCTACGGACCTCCTCCTCCACCATCGCCAGGCCCTCCCTTTGATCCATACGCTCCTCCTCCACCAGGGCCACCAGGGCCTCAATTCGATCC
ATTCGCACCTCCGCCACCGCGAGGGCCTCCATTTGATCCATTCGCTCCTCCGCCAGGGCCTCCATTTGATCCATACGCTCCTCCGCCAGGGCCTCCACCGCCAGGCCCTCCATTCGCTCCTCCGCCAGGTCCTATGGGTTACCCACCGCCACCTGGTCCTATGTTCGGTGGCCCTCCCCCTCCTGGCCCTGGTCCTTACG
GTCCTCCATTTCCTTGAAGAGTCCGGGGATTATCAGCACAGCTACAGCTCTGTGAGGGATATATCTTAGGTTATGTATTAGTCTGCTTAATTCAGgtatctgagatacctcatgtattatcttgattactgcaaatgtatgtaaaacgtttatagtttacttggaataaaactttatgcgtttagagctctactttttta
agGGTTTGCAGTTTCCAAGTTACAGCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGTCTCAAATTTATACCTAATTTTGATTATTTCTTGAAATCAAGGGTTTGCAGTTTCCAAGTTACAGCTTCTCTTCTCCTTCTTGATTATTGTTAAATGCAGACTGT