sp|Q8L6J3|RPO2B_TOBAC ----> DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial


Intron 1 GTTTGGGTTT ... CCCTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A144282211
A251.7228309
A358.33253513
A441.46241710
A55010101
A679.12197217
A759.49649414
A864.23447925
A968.75255527
A1062.92335627



>TRINITY_DN108550_c0_g5_i1 from sample A2 / Example spliced isoform
AGATCTTTATACTAAGTACTTTATCGCTGAAAATCGATAAACCCTGCCGATAAGAAGTAGAGATAGAAAAAAACCACGGGGGGGTTTAGCGAGGGTTTTCGGAAAGGGAAAAACAACCCAAAGTAATCATTTTAATGCTAGACATAGCGGGGTTTAACAGCAGAGGCAGCAGGGTTTTCGCAGGAGGAATGAATCCCTTG
TACAGATATCCACTCCGAATATCGATCAACAGCATCGAACGAGGTTAGTTTTCCCAGTTCTCACCCAAACTTTTACTCGAAATCCCGATCTCGAGAAGCCAGAGTTCGAACACTGGAGCTTTAGCGTGAATTTATCATCTGTTACCTTGCCTCATTCCTCCTGGCGGCCACACGAATCCCCCATTCAGTACCGCTAGGAC
AGGGTCCAGATATGTGGAGAGCGGTGCGGCAGATATACCCTCGGAAGCTGACTAATAATAATATCAGGGAACCATCTTGTTTGCGTTGTCATGTCTGTTGTTCGAGCCACAGAAACTCTATGTACGTCAACGAGAAGCGAGAAGCAGCGGAATATTGCAGATTCAGTGGGCTGACCTTTGTTCACGAAAGTGACCGTCAA
GGTTTCTGTGTAGAGGACTCTGTGTGTACTAGTTTAGATGCAACAAGGATTCTCCATAGCACGGTGCATTTGCCGAGGACATTGAGGTTTGGCTTTATAGGTGGCGTTACTGTAGATCCTCCGTGGCCGCCACCGGGAGCCAAGGCCTTTGCCAGCACGGCGTTAGAGGCCGTGGTCAGCAGTGATGTGGACGAGGAGGG
CTCTACGAGCAGCGAGGAAGGTCGTCGCCAATTGAGTAGAGTCAAATCAAATAACATCCGGGAAGTAAATCGAAACCGAAAGGATGAGGAGGATGAGAGGAGGATGGATAAAGCTAAAGATCAGGCACTTAGGAAAAGGCAGATGCAGATGGAGTCAGAGGCTTGGGAGAATGCTGCTAGGGAATACAGGGAACTCATGG
AGGATATGTGTGCGCAGAAATTGGCTCCTAATTTGCCATATGTGAAGTCCCTCTTCCTCGGGTGGTTTGAGCCGCTGCGTGACGCTATCGCTGCGGAGCAGGCTGCACAGGAGACCCGGAAATTCAAGACAACGTATGGGGACTACCTCTCGCAGCTGCCGGCTGATATGTTGGCTGTCATCACAATGCACAAGCTGATG
GGACTTCTGTTGATATCCCAGGATGATAGCTGTACGCGAGTTATTCAAGCAGCGGTGCAGATTGGCGAGGCTGTTGAGCAGGAGGTTAGGGTTCATAACTTCATGGAAAAGACAAAGAAAAAACCCAAAAAAAGGACTAAGAATGAAGGAAAGGAAGAACAAACCGTAAGTAAGGAACATGAAGTTATTCATAAGCGTAT
AAAAGATTTGATGCAAAAGCAACAAGGACGACTAGTGAGGAAGATTGTCAGAGAAAGGGATGATTCAGAACCTTGGGGTCATGCTCTGCATGCCAAGGTGGGAAGTCGTTTAATAGAACTCCTACTACAAGCAACCTTCATACAACCTCCTGTTGATCAGTCAGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAGC
ATACATTCAGGACAGTAATGATGGGACAGAAGGTTGTGAAAAGATACGGGGTTATAGAATGTGATCCGATGGTGAAGAGGGGACTTGAAAGATCGGCAAGGCACATGGTGATACCTTACATGCCAATGTTGGTTGAACCTATTCAGTGGACAGGGTATGACAAGGGAGGTTATTTAATCTTGCCTTCTTATGTAATGCGC
ATACATGGGGCAAAACAGCAACGAGAAGCTATGAAGAGAGTTCAAAGGAACCAGATACAGAGAGTATATCAGGCATTGGATACACTTGGCTCTACAAAATGGAGAATCAATAAAAGAGTTCTTGATGTGGTAGATAGGCTTTGGGCAGGAGGAGGTCGCCTTGCAGACTTGGTTGATCGGGAGGATGTTTCCATCCCTGA
GAGACCAGATACAGAAGATGAAACTGAGATTAGACGTTGGAAATGGTGTGTAAAAAAAGCAAAGAAGACAAATAGTGAGAGGCATTCTCAGCGTTGCGATACAGAATTAAAACTTACTGTTGCGAGAAAGTTGAAGGATGAGGAATGTTTTTACTATCCACATAACTTGGATTTTCGAGGGCGTGCTTACCCAATGCATC
CGTATTTACATCATCTAGGTTCAGACATGTGTCGAGGAATTTTAGAGTTTGCTGAGGGTCGACCATTAGGCAAGACAGGGCTTTATTGGCTTAAGATACATTTGGCCAACTTATATGGTGGTGGTGTAGACAAATATTCTTTTGAGGGCCGTCTAACATTTGTTGAGGACAACATAGACAATATTATTGACTCAGCAGAG
AGGCCACTTGAAGGGAATAGATGGTGGTTAGAAGCTGAAGATCCCTTCCAGTGTCTATCAGTTTGTATGGATCTAACAGATGCGTTGAAGAGCTCTTCCCCAGAGAGTGCCATCTCTCATATGCCAGTTCATCAGGATGGCTCATGCAATGGTTTGCAACACTATGCAGCCTTGGGAAGAGATAAGGTGAGGAATGACAA
ATTGATTTTTTTTCTCATCTTTGGTGTTTATATGTCTTGCTTGCATGGTTGGATAGAATGTTTTGTATGAATAAATGATTTCCACTTACA


>TRINITY_DN108550_c0_g5_i2 from sample A2 / Example unspliced isoform:
AGATCTTTATACTAAGTACTTTATCGCTGAAAATCGATAAACCCTGCCGATAAGAAGTAGAGATAGAAAAAAACCACGGGGGGGTTTAGCGAGGGTTTTCGGAAAGGGAAAAACAACCCAAAGTAATCATTTTAATGCTAGACATAGCGGGGTTTAACAGCAGAGGCAGCAGGGTTTTCGCAGGAGGAATGAATCCCTTG
TACAGATATCCACTCCGAATATCGATCAACAGCATCGAACGAGGTTAGTTTTCCCAGTTCTCACCCAAACTTTTACTCGAAATCCCGATCTCGAGAAGCCAGAGTTCGAACACTGGAGCTTTAGCGTGAATTTATCATCTGTTACCTTGCCTCATTCCTCCTGGCGGCCACACGAATCCCCCATTCAGTACCGCTAGGAC
AGGGTCCAGATATGTGGAGAGCGGTGCGGCAGATATACCCTCGGAAGCTGACTAATAATAATATCAGGGAACCATCTTGTTTGCGTTGTCATGTCTGTTGTTCGAGCCACAGAAACTCTATGTACGTCAACGAGAAGCGAGAAGCAGCGGAATATTGCAGATTCAGTGGGCTGACCTTTGTTCACGAAAGTGACCGTCAA
GGTTTCTGTGTAGAGGACTCTGTGTGTACTAGTTTAGATGCAACAAGGATTCTCCATAGCACGGTGCATTTGCCGAGGACATTGAGGTTTGGCTTTATAGGTGGCGTTACTGTAGATCCTCCGTGGCCGCCACCGGGAGCCAAGGCCTTTGCCAGCACGGCGTTAGAGGCCGTGGTCAGCAGTGATGTGGACGAGGAGGG
CTCTACGAGCAGCGAGGAAGGTCGTCGCCAATTGAGTAGAGTCAAATCAAATAACATCCGGGAAGTAAATCGAAACCGAAAGGATGAGGAGGATGAGAGGAGGATGGATAAAGCTAAAGATCAGGCACTTAGGAAAAGGCAGATGCAGATGGAGTCAGAGGCTTGGGAGAATGCTGCTAGGGAATACAGGGAACTCATGG
AGGATATGTGTGCGCAGAAATTGGCTCCTAATTTGCCATATGTGAAGTCCCTCTTCCTCGGGTGGTTTGAGCCGCTGCGTGACGCTATCGCTGCGGAGCAGGCTGCACAGGAGACCCGGAAATTCAAGACAACGTATGGGGACTACCTCTCGCAGCTGCCGGCTGATATGTTGGCTGTCATCACAATGCACAAGCTGATG
GGACTTCTGTTGATATCCCAGGATGATAGCTGTACGCGAGTTATTCAAGCAGCGGTGCAGATTGGCGAGGCTGTTGAGCAGGAGGTTAGGGTTCATAACTTCATGGAAAAGACAAAGAAAAAACCCAAAAAAAGGACTAAGAATGAAGGAAAGGAAGAACAAACCGTAAGTAAGGAACATGAAGTTATTCATAAGCGTAT
AAAAGATTTGATGCAAAAGCAACAAGGACGACTAGTGAGGAAGATTGTCAGAGAAAGGGATGATTCAGAACCTTGGGGTCATGCTCTGCATGCCAAGGTGGGAAGTCGTTTAATAGAACTCCTACTACAAGCAACCTTCATACAACCTCCTGTTGATCAGTCAGCAGAAGGACCTCCAGAAATTAGACCTGCATTTAAGC
ATACATTCAGGACAGTAATGATGGGACAGAAGGTTGTGAAAAGATACGGGGTTATAGAATGTGATCCGATGGTGAAGAGGGGACTTGAAAGATCGGCAAGGCACATGGTGATACCTTACATGCCAATGTTGGTTGAACCTATTCAGTGGACAGGGTATGACAAGGGAGGTTATTTAATCTTGCCTTCTTATGTAATGCGC
ATACATGGGGCAAAACAGCAACGAGAAGCTATGAAGAGAGTTCAAAGGAACCAGATACAGAGAGTATATCAGgtttgggttttgtgtactattgttgcataactgaatccttatacacatagcttgaatgcaaggtgaagcatggttgacccactggtttgtggaggcacttcaatgtgtgttagctgttcattttcctt
taggatttaatttgtacctatttcacacaacatactaaatcgtgattagctaaagattctatcattgatggtgctcaacttttggttgttctattttttatgtatatcaagtcattctaatttgaatatatatttgagtttttattttaccctttgcagGCATTGGATACACTTGGCTCTACAAAATGGAGAATCAATAA
AAGAGTTCTTGATGTGGTAGATAGGCTTTGGGCAGGAGGAGGTCGCCTTGCAGACTTGGTTGATCGGGAGGATGTTTCCATCCCTGAGAGACCAGATACAGAAGATGAAACTGAGATTAGACGTTGGAAATGGTGTGTAAAAAAAGCAAAGAAGACAAATAGTGAGAGGCATTCTCAGCGTTGCGATACAGAATTAAAAC
TTACTGTTGCGAGAAAGTTGAAGGATGAGGAATGTTTTTACTATCCACATAACTTGGATTTTCGAGGGCGTGCTTACCCAATGCATCCGTATTTACATCATCTAGGTTCAGACATGTGTCGAGGAATTTTAGAGTTTGCTGAGGGTCGACCATTAGGCAAGACAGGGCTTTATTGGCTTAAGATACATTTGGCCAACTTA
TATGGTGGTGGTGTAGACAAATATTCTTTTGAGGGCCGTCTAACATTTGTTGAGGACAACATAGACAATATTATTGACTCAGCAGAGAGGCCACTTGAAGGGAATAGATGGTGGTTAGAAGCTGAAGATCCCTTCCAGTGTCTATCAGTTTGTATGGATCTAACAGATGCGTTGAAGAGCTCTTCCCCAGAGAGTGCCAT
CTCTCATATGCCAGTTCATCAGGATGGCTCATGCAATGGTTTGCAACACTATGCAGCCTTGGGAAGAGATAAGTTAGGAGCAGTAGCAGTTAACCTGGTTGGTGGTGAGAAACCTGCTGATGTCTACTCGGGTATTGCTGCTAGGGTTGATGAAATCATGCAAAGAGATGCACTGAATGATCCTGCAACAGACAAAACTG
CAGAATATGCAAGAGTATTACTTGGGCAGGTGGACAGGAAATTAGTGAAGCAAACTGTGATGACTTCAGTTTATGGAGTGACCTTTATTGGTGCTCGCGATCAAATAATGAAAAGGTTGAAAGAAAGGGGTTGCATTGCAGATGATCGAGTCCTTTATATTGCATCTTGCTATGCTGCCAAAACAACTCTTACCGCATTG
GGTGAAATGTTTAATGCTGCAAGGAGTATCATGACTTGGTTAGGCGACTGTGCTAAG