sp|A9LNK9|CPSF_ARATH ----> 30-kDa cleavage and polyadenylation specificity factor 30
Intron 1 GCACATTAAA ... TTCATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.48 | 88 | 33 | 21 |
| A2 | 25 | 63 | 28 | 14 |
| A3 | 26.15 | 72 | 34 | 17 |
| A4 | 23.14 | 88 | 32 | 21 |
| A5 | 21.9 | 41 | 15 | 8 |
| A6 | 10 | 45 | 8 | 2 |
| A7 | 20.45 | 107 | 36 | 19 |
| A8 | 19.61 | 41 | 11 | 9 |
| A9 | 20.35 | 90 | 22 | 24 |
| A10 | 24.89 | 83 | 34 | 21 |
>TRINITY_DN120584_c0_g2_i4 from sample A1 / Example spliced isoformGAGGCACTCCAGTGTTATGGGATTTAGTGCCCACAGAAAAACATAAGACTTGCACAAAATAAATCCTTCACAGAAGAGGGTTACTCTACTTCGGTTCAACCCCCTTCCAGAAGAGACATCAGAACTCAGAGCTCCCATCGTCCGGACCTCTTCATGACTTCTCGAAAGAGCTCAAAATCGTCACAAATGGTCAAATATTG
AATCTCCTCAAACTTTTGCAATTCCTGCAAACTTTACTTCGATTTCCATCATTCACAGAGTGTTCAACAACTGCCAAGATAACTTCTTGATTCAATGGAAGGAGGCTTCTCACTACAAACCAGGGTGTTGAGATTTTAGGGCTTCTTTTTCTTTTCTGTTTCATTCCTTGCAGCACAGTGTAGCAATGGAGGACGTAGAG
GGCGCCCTAAGCTTTGATTTCGAGGGCGGGCTGGAAACGGGAGCCGCTGCGGGCGGCCCTTCGGCTCTAGGTCCCGACGGGACGTCGAGTGTTCAAACCCCCGCGGGGCCTCTACCCGCGGTTCCAAACTCAAATGTCGGACAAAAGGTTTCTAAGAGGAATTTCAGGCAGACGGTGTGCAGGCACTGGCTGAGGGGTTT
GTGCATGAAGGGGGATTATTGCGGGTATCTTCATCAGTTTGACAAGGTTAGGATGCCCATCTGTAGGTTTTTTGCTAGGTTTGGAGAGTGCCGCGAGCCCGACTGCATCTACAAGCACACTAATGACGATACCAGGGAGTGCAACATGTATAAACTTGGTTTCTGTCCAAATGGACCTGACTGTCGCTATAGGCATTTAA
AGCTTTCTGGCCCACCTCCCCCTATAGAGGAAATTTATGAAAAGATTCAACAAACGAATCCTTCTGTGAATGGAACATCCTCAAACAGATTTTCCCAGCAAAGGCATCACACTCATAATAGAGAGGAAGGGCCACAGCGGAAGCCATCTGTGACTGGTGTTTCTCAGAGACCACATGGCACTTCTTCTTTGGGGGAGGAT
TCTTCAAGTCAGCAGCTGCGACAGACACAGCATCTTCCTCAAGAATATGCTAGCCATAACCAAGAGCAGTCATTGTTGCAGAACCCTGTTGGAAATGGATTGACAGGTCAGCCAAACAGAGTGTCTGTTGCTTCACCTCTACCAGCGGGCCATTCCAGGTATTTTATTGTGAAGTGTAGCAATCTAGAGAACTTGGAACT
CTCTGTGCAAAGAGGAATATGGGCAACTCATAGAAATAATGAGGCGAAACTGAATGAAGCTTTTGACTCATGTGATAATGTTATTCTTGTGTTCTCTGTGAATGGAACACGCCACTTTCAGGGATGTGCAAGAATGACATCTAAAATTGGTGGAGTAGTTGGTGGAGCAGGATGGAAATATGCAAATGGGACTTCACATT
ATGGCCGGAACTTCCGTCTTAAATGGTTAAAGCTCTGCGAGTTGTCTTTCCACAAGAGTTACCATTTGAGGAACCCATTCAATGAAAACCTGCCTGTGAAGATCAGCCGTGACTGTCAGGAATTGGAGGTTTCCATTGGGCAACAGCTTGTTTCGCTTCTTTATCTTGAGCCTGATAGTGAACTCATGGCTGTAGCATGT
GCTGCTGAATCAAAACGTGAGGATGAAAAAGCACAGGGTGCGGGTTCAGCCCATGAGATCGAAGATCCTAATATTGTTCCCTTTGAAGACAATGATGATGATCAGGATGATGAAGAGAGTGATGAACAAGAAAGCTCAAGCCAGACTTGGAGTGCAAGCCAAGGTAGAGGCAAGGGAAGAGGAATGATGTGGCGTGGGAC
AATGGCAAGGGGTAGCAGGGCAATGACAGGATCAAAGGCTATGGGATTTCATCCAGGTATGATTCCTGGTGATAGTTACAGCTTTGACAGGTTTGGGATGGGCCCTGCAGATGGGTTTGCAATGCCAGATATGTTTACTGCTCCAGCAGGTCAGGGTCGAGGATTTCCTCCTTATGGCCAACCAGGTCCCAGATTCGGTC
CAGCTTCAGGAATGATGTTTGCACCAATGGATGGTTCAGGATCTACACCTGGAATGGTTTTCCAGGGAAGATCCCACCCACCTAATGGAATATTTTCTCATGGTGGACCAGCGATGATGCCTTCCAGTGCTACTCATGCACCACTCTTGGCTGGAAACAGTCAATATGTTTCAATGGGAGCTGGAAGGTCCAATTTCATG
GGTGGATCAGGACCAATTGGGCGTCCTAGTAGGGGAAAAGGCATGCCATATCGACCTCCTCAAGGGGGAAACAGTGGGAGGGGAAGGAAAGATCAGAGACGCCGCAAGTTTGAGAATAATCCTTGCAGTGATAGGGTGACTTCAGGGATGGATCAAAGGGCATCTGGTAAGGCTTGGCAGAGACAAACTTCAGTGGAAGT
TGATAGGGAACCAGACTATCGAGGGCCCTCAAGAGTTCACCATCATGATGGATATGACTATGGGAATAATAGTTACACTGCAAATAATGATGAAAGTGAAAGCGAAGATGAAGCTCCTCGAAGATCCAGGCATGGTGAGAGCAAGAAGAGAAGGCGTGATTGGGATGGAGAAGAGGCAGACCAAGGTGATAATTGTGACT
TGCCTGCGGCAGTAGGAAATCCTGAGGATTCTGGATACTAGGCACCTCATTATTTCTCCGGTTCTTCATTGCAGTTACTTGAGATGTAAGGTTGGTCTTGTCAGAAATTCACCCAATACTGTAATTGATAATTTGACATACCATCCTGCCACTGTGGAAGTGAGATTTAAAGCTCATATTCTGACATTTCTATATTCCAC
CATTTATAGCAGGTTATAATCAAGTGGATTTTCTTAATGTAATTCTGCACGATGGAAGAAAAATGTTGCTAATTCATTGAGAATATATTCTCGTTTCCTGTGATCTACTGCACAGCCATGTAATCTTCTTCTGAGAATTGCAAATTTGCAACATGGAAAAGTAGGTCATGGCCAAAGTTGGCAAATTGGGAAGTCAGATT
TAAAGGTCGTATATTTACATTTTTATATTTTGCTATTTATAGCAGGTTACGATCAGGTGGATTTTCTAATTGCAATTCTCCATGATGGAAGGAAAATGTTTCTTATTAATTGAGAACTTGTTCTCGTTTCCTTTGATCTGTTGTACAGTCTTGTAATCTTATTTTAAGAATTGCAAATATGAAATGTGTAACAATGAAAA
GTAGGTGATGGACAAAATTGCCAAATTGGGACATATTCTTATCCAGTGCATCATTAGAGTTTGCTGTCTGTATGGATAAATGGATGGGGAGCACAACCACAAACATATTGGGCATCCACTGTCCTATGGATCCAATTATTGTACTTACAGAAATTGAAGAAAGTTCTTCTCTTGGTTTGAAGAAAGTTATGTCAGTTGTC
TCTGACCCATTGTTTTACTTTGGCTGGACAAGGAGTACAGTTGGTAAAGGACGCCATAGCTATCTTATGCTAATCAGGTAGTTCTACTCTATATTTTTTTTATTCAGTTGCAG
>TRINITY_DN120584_c0_g2_i9 from sample A1 / Example unspliced isoform:GAGGCACTCCAGTGTTATGGGATTTAGTGCCCACAGAAAAACATAAGACTTGCACAAAATAAATCCTTCACAGAAGAGGGTTACTCTACTTCGGTTCAACCCCCTTCCAGAAGAGACATCAGAACTCAGAGCTCCCATCGTCCGGACCTCTTCATGACTTCTCGAAAGAGCTCAAAATCGTCACAAATGGTCAAATATTG
AATCTCCTCAAACTTTTGCAATTCCTGCAAACTTTACTTCGATTTCCATCATTCACAGAGTGTTCAACAACTGCCAAGATAACTTCTTGATTCAATGGAAGGAGGCTTCTCACTACAAACCAGGGTGTTGAGATTTTAGGGCTTCTTTTTCTTTTCTGTTTCATTCCTTGCAGCACAGTGTAGCAATGGAGGACGTAGAG
GGCGCCCTAAGCTTTGATTTCGAGGGCGGGCTGGAAACGGGAGCCGCTGCGGGCGGCCCTTCGGCTCTAGGTCCCGACGGGACGTCGAGTGTTCAAACCCCCGCGGGGCCTCTACCCGCGGTTCCAAACTCAAATGTCGGACAAAAGGTTTCTAAGAGGAATTTCAGGCAGACGGTGTGCAGGCACTGGCTGAGGGGTTT
GTGCATGAAGGGGGATTATTGCGGGTATCTTCATCAGTTTGACAAGGTTAGGATGCCCATCTGTAGGTTTTTTGCTAGGTTTGGAGAGTGCCGCGAGCCCGACTGCATCTACAAGCACACTAATGACGATACCAGGGAGTGCAACATGTATAAACTTGGTTTCTGTCCAAATGGACCTGACTGTCGCTATAGGCATTTAA
AGCTTTCTGGCCCACCTCCCCCTATAGAGGAAATTTATGAAAAGATTCAACAAACGAATCCTTCTGTGAATGGAACATCCTCAAACAGATTTTCCCAGCAAAGGCATCACACTCATAATAGAGAGGAAGGGCCACAGCGGAAGCCATCTGTGACTGGTGTTTCTCAGAGACCACATGGCACTTCTTCTTTGGGGGAGGAT
TCTTCAAGTCAGCAGCTGCGACAGACACAGCATCTTCCTCAAGAATATGCTAGCCATAACCAAGAGCAGTCATTGTTGCAGAACCCTGTTGGAAATGGATTGACAGGTCAGCCAAACAGAGTGTCTGTTGCTTCACCTCTACCAGCGGGCCATTCCAGGTATTTTATTGTGAAGTGTAGCAATCTAGAGAACTTGGAACT
CTCTGTGCAAAGAGGAATATGGGCAACTCATAGAAATAATGAGGCGAAACTGAATGAAGCTTTTGACTCATGTGATAATGTTATTCTTGTGTTCTCTGTGAATGGAACACGCCACTTTCAGGGATGTGCAAGAATGACATCTAAAATTGGTGGAGTAGTTGGTGGAGCAGGATGGAAATATGCAAATGGGACTTCACATT
ATGGCCGGAACTTCCGTCTTAAATGGTTAAAGCTCTGCGAGTTGTCTTTCCACAAGAGTTACCATTTGAGGAACCCATTCAATGAAAACCTGCCTGTGAAGgcacattaaaggattgttctgcacttctaggcatgctgtcccttcatgcaagATCAGCCGTGACTGTCAGGAATTGGAGGTTTCCATTGGGCAACAGCT
TGTTTCGCTTCTTTATCTTGAGCCTGATAGTGAACTCATGGCTGTAGCATGTGCTGCTGAATCAAAACGTGAGGATGAAAAAGCACAGGGTGCGGGTTCAGCCCATGAGATCGAAGATCCTAATATTGTTCCCTTTGAAGACAATGATGATGATCAGGATGATGAAGAGAGTGATGAACAAGAAAGCTCAAGCCAGACTT
GGAGTGCAAGCCAAGGTAGAGGCAAGGGAAGAGGAATGATGTGGCGTGGGACAATGGCAAGGGGTAGCAGGGCAATGACAGGATCAAAGGCTATGGGATTTCATCCAGGTATGATTCCTGGTGATAGTTACAGCTTTGACAGGTTTGGGATGGGCCCTGCAGATGGGTTTGCAATGCCAGATATGTTTACTGCTCCAGCA
GGTCAGGGTCGAGGATTTCCTCCTTATGGCCAACCAGGTCCCAGATTCGGTCCAGCTTCAGGAATGATGTTTGCACCAATGGATGGTTCAGGATCTACACCTGGAATGGTTTTCCAGGGAAGATCCCACCCACCTAATGGAATATTTTCTCATGGTGGACCAGCGATGATGCCTTCCAGTGCTACTCATGCACCACTCTT
GGCTGGAAACAGTCAATATGTTTCAATGGGAGCTGGAAGGTCCAATTTCATGGGTGGATCAGGACCAATTGGGCGTCCTAGTAGGGGAAAAGGCATGCCATATCGACCTCCTCAAGGGGGAAACAGTGGGAGGGGAAGGAAAGATCAGAGACGCCGCAAGTTTGAGAATAATCCTTGCAGTGATAGGGTGACTTCAGGGA
TGGATCAAAGGGCATCTGGTAAGGCTTGGCAGAGACAAACTTCAGTGGAAGTTGATAGGGAACCAGACTATCGAGGGCCCTCAAGAGTTCACCATCATGATGGATATGACTATGGGAATAATAGTTACACTGCAAATAATGATGAAAGTGAAAGCGAAGATGAAGCTCCTCGAAGATCCAGGCATGGTGAGAGCAAGAAG
AGAAGGCGTGATTGGGATGGAGAAGAGGCAGACCAAGGTGATAATTGTGACTTGCCTGCGGCAGTAGGAAATCCTGAGGATTCTGGATACTAGGCACCTCATTATTTCTCCGGTTCTTCATTGCAGTTACTTGAGATGTAAGGTTGGTCTTGTCAGAAATTCACCCAATACTGTAATTGATAATTTGACATACCATCCTG
CCACTGTGGAAGTGAGATTTAAAGCTCATATTCTGACATTTCTATATTCCACCATTTATAGCAGGTTATAATCAAGTGGATTTTCTTAATGTAATTCTGCACGATGGAAGAAAAATGTTGCTAATTCATTGAGAATATATTCTCGTTTCCTGTGATCTACTGCACAGCCATGTAATCTTCTTCTGAGAATTGCAAATTTG
CAACATGGAAAAGTAGGTCATGGCCAAAGTTGGCAAATTGGGAAGTCAGATTTAAAGGTCGTATATTTACATTTTTATATTTTGCTATTTATAGCAGGTTACGATCAGGTGGATTTTCTAATTGCAATTCTCCATGATGGAAGGAAAATGTTTCTTATTAATTGAGAACTTGTTCTCGTTTCCTTTGATCTGTTGTACAG
TCTTGTAATCTTATTTTAAGAATTGCAAATATGAAATGTGTAACAATGAAAAGTAGGTGATGGACAAAATTGCCAAATTGGGACATATTCTTATCCAGTGCATCATTAGAGTTTGCTGTCTGTATGGATAAATGGATGGGGAGCACAACCACAAACATATTGGGCATCCACTGTCCTATGGATCCAATTATTGTACTTAC
AGAAATTGAAGAAAGTTCTTCTCTTGGTTTGAAGAAAGTTATGTCAGTTGTCTCTGACCCATTGTTTTACTTTGGCTGGACAAGGAGTACAGTTGGTAAAGGACGCCATAGCTATCTTATGCTAATCAGGTAGTTCTACTCTATATTTTTTTTATTCAGTTGCAG